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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PTPRS
protein tyrosine phosphatase, receptor type S

Gene

Official Symbol	PTPRS
Official Full Name	protein tyrosine phosphatase, receptor type S
CGNC ID	2972
also known as	CRYPALPHA, R-PTP-S, receptor-type tyrosine-protein phosphatase S\|CRYP alpha\|chick receptor tyrosine phosphatase alpha\|phosphoprotein phosphatase\|protein-tyrosine phosphatase CRYPalpha\|receptor-type tyrosine-protein phosphatase delta
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205407
Polypeptide	NP_990738
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.42907

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse	19266	ENSMUSG00000028399	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:97812
Xenopus	100145434, 399155			478373
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	396375
Ensembl Gene	ENSGALG00000004048
KEGG	gga:396375

Entry 1

GEISHA Id	CRYPALPHA.Chilton.2000	Data Source	Publication
Complete cDNA Template Probe	show CCGGCCGGCATGGCAGCGGGCGGCCGCGCCGCCAGGTGCTGACGCCGCTGGGCGGGCGCTGTGAGTGCTGTGAGCGGAG CTGTGGGCGGGGGCTGAAGGCCAACACAGAGGATGAGGATCCTTCCCAGCCCTGGGATGCCTGCGCTGCTCTCCCTCGT GAGCCTTCTCTCCGTGCTGCTGATGGGTTGCGTAGCTGAAAGTCCCCCTGTGTTCATTAAAAAGCCTGTGGACCAAATT GGTGTGTCGGGAGGGGTGGCATCTTTTGTATGCCAAGCAACTGGAGACCCGAAGCCACGAGTCACCTGGAACAAGAAAG GGAAGAAAGTGAACTCTCAGAGGTTTGAGACAATTGAATTTGATGAAAGTGCAGGTGCTGTTTTGAGGATCCAGCCGCT CCGGACTCCCCGGGATGAGAACATTTATGAGTGTGTTGCTCAAAACCCTCATGGGGAAGTCACCGTCCATGCCAAGCTG ACCGTCCTCCGAGAGGACCAGTTACCTCCTGGCTTCCCAAACATTGACATGGGGCCCCAGCTGAAAGTGGTGGAGCGGA CACGAACGGCCACGATGCTCTGTGCAGCCAGTGGGAACCCAGACCCAGAGATCACCTGGTTTAAAGATTTCCTGCCTGT CGACCCAAGCACGAGCAATGGGAGAATAAAGCAGCTGAGATCAGGTGGCCTGCAGATCGAAAGCAGTGAGGAGACGGAC CAGGGGAAGTACGAATGCGTCGCCAGCAACAGCGCGGGAGTGCGCTACTCCTCACCTGCAAACCTTTACGTGAGAGTTC GGCGCGTGGCCCCTCGCTTCTCCATCCTCCCTGTCAGCCACGAAATCATGCCCGGGGGCAACGTCAACATCACCTGTGT GGCAGTGGGCTCACCCATGCCCTACGTCAAGTGGATGCAGGGAGCAGAGGACCTGACGCCCGAAGATGACATGCCTGTG GGCCGCAATGTCCTGGAGCTCACGGATGTCAAGGACTCCGCCAACTACACGTGTGTGGCCATGTCCAGTCTGGGAGTCA TAGAAGCTGTTGCTCAGATCACGGTGAAATCACTGCCCAAGGCTCCTGGGACACCAGTGGTGACAGAGACGACAGCAAC GAGTATCACCATCACCTGGGACTCTGGAAATCCAGACCCTGTGTCCTACTATGTCATTGAATACAAGTCTAAAAGCCAG GATGGACCATATCAGATCAAAGAGGACATCACCACCACACGCTACAGCATTGGGGGGCTCAGCCCCAACTCTGAGTATG AGATCTGGGTCTCTGCAGTCAACAGCATTGGGCAGGGGCCTCCCAGTGAGTCAGTGGTCACTCGCACTGGGGAACAAGC TCCTGCCAGTGCCCCCCGTAACGTGCAGGGACGAATGCTGAGCAGCACCACTATGATTATCCAGTGGGAGGAACCAGTG GAGCCCAATGGGCAGATCCGTGGCTACCGTGTGTATTACACTATGGAGCCTGACCAACCTGTCAGCAACTGGCAGAAGC ACAATGTGGATGACAGCCTCCTCACCACAGTGGGCAGCCTCCTTGAGGATGAAACCTACACGGTTCGGGTCCTGGCCTT CACCTCCGTGGGAGACGGGCCTCTTTCTGACCCCATCCAGGTTAAGACGCAGCAGGGAGTTCCTGGGCAGCCGATGAAC TTCCGAGCAGAAGCCAAGACAGAGACAAGCATCGTGTTGTCATGGAGCCCTCCTCGACAGGAGATCATAGTGAAGTATG AGCTCCTCTTTAAGGAAGGAGACCACGGCAGAGAGGTGCCAAGGAACTTCGAGCCAACGACTTCCTTCACCGTGGAAGG CCTGAAGCCCAACACTGAGTATGTCTTCCGACTGGCTGCCCGCTCGGCTCTGGGCCTGGGGGCCTTCACCCCGGAGGTC AGAGAGCGCACCTTGCAGTCTATTTTACCCAAAAACTTCAAGGTGAAGATGGTGACAAAGACATCTGTCCTTCTGAGCT GGGAGTTTCCTGAGAATTACAACTCTCCCACTCCATACAAGATCCAGTACAATGGTCTGAATGTTGATGTGGATGGCCG CACCACCAAGAAACTCATCACCAACTTGAAGCCCCACACATTCTACAACTTTGTTCTCATGAATCGGGGCAATAGCATG GGTGGCCTGCAGCAGAATGTCGCTGCCTGGACCGCTGCTAACATGTTATCTAGGAAGCCAGAGGTGACCCACAAGCCTG ATGCTGATGGCAACGTGGTGGTGATTCTCCCTGATGTGAAGAGCTCTGTGGCTGTCCAAGCTTACTACATTGTGGTGGT GCCTCTAAGGAAGTCCCGTGGAGGACAGTTCCTGAACCCCTTGGGCAGTCCTGAAGAGATGGACCTGGAGGAGCTCATT CAGGACATTGCCAGGCTCCGACGCCGAAGTTTGCGTCACTCCCGTCAGCTGGACTTCCCCAAGCCCTACATTGCTGCCC GTTTTCGTTCCCTCCCCAACCACTTCGTCCTGGGCGATATGAAACACTACGACAACTTTGAGAACAGAGCCCTGGAGCC AGGGCAGAGATACGTCATCTTCATCCTGGCAGTGCTCCAGGAACCTGAGGCAACTTTTGCTGCTAGTCCATTCTCCGAC CCTATCCAGCTGGACAACCCTGACCCACAGCCAATCATTGATGGAGAGGAAGGGCTGATCTGGGTCATTGGGCCCGTCC TGGCCGTGGTGTTCATCATCTGCATCGTTATTGCCATTCTGCTCTACAAAAACAAACCAGACAGCAAACGGAAAGATTC AGAGCCACGGACAAAATGCCTCCTGAACAATGCTGAAATCACCCCTCACCACCCCAAGGACCCTGTGGAAATGAGGCGC ATCAACTTCCAGACTCCAGGTATGCTCAGCCACCCACCAATCCCTGTTTCCGAGCTGGCTGAACACACAGAGCATCTCA AAGCTAATGATAACCTGAAATTATCCCAAGAGTATGAGTCCATTGACCCCGGCCAGCAGTTCACCTGGGAGCACTCCAA CCTGGAAGTGAACAAACCCAAAAACCGCTACGCCAACGTGATTGCCTACGATCACTCACGTGTCATCCTGCTGCCGATC GAAGGAATTGTGGGCAGTGATTACATCAATGCCAACTATATCGATGGCTACCGGAAGCAGAATGCCTACATTGCCACCC AGGGACCTCTGCCAGAGACATTTGGGGACTTTTGGAGGATGGTGTGGGAGCAACGTTCAGCTACTATTGTTATGATGAC TAAGCTGGAGGAGAAATCACGGATAAAGTGTGACCAGTACTGGCCAGGTCGAGGAACAGACACCTACGGGATGATTCAA GTGACATTACTTGATACCATTGAATTGGCCACATTCTGCGTTCGAACATTCTCCCTTCATAAGAACGGCTCCAGTGAGA AGCGGGAGGTTCGCCAGTTCCAGTTCACAGCATGGCCAGACCACGGTGTACCTGAGTACCCCACCCCATTCCTGGCTTT TCTGAGACGAGTGAAAACCTGCAACCCCCCTGATGCTGGTCCAATTGTGGTGCACTGCAGCGCGGGGGTTGGACGGACC GGCTGCTTCATTGTGATTGATGCCATGCTAGAGAGGATAAAACATGAGAAGACGGTGGACATTTATGGGCACGTCACCC TCATGCGGTCACAGCGGAACTACATGGTACAGACAGAAGACCAGTACAGCTTTATACACGATGCCTTGCTTGAGGCCGT TGCGTGCGGCAACACAGAAGTCCCAGCTAGGAATCTCTATACGTACATCCAGAAGCTGGCACAGATTGAAGTTGGAGAG CACGTGACAGGCATGGAGCTGGAGTTTAAGCGCCTCGCCAACTCCAAAGCCCACACCTCCAGGTTCATCAGTGCCAATC TCCCATGCAACAAATTCAAGAATCGTCTTGTCAACATCATGCCATATGAGACAACGCGGGTCTGCCTTCAGCCCATCCG AGGAGTGGAGGGGTCAGACTACATCAATGCCAGCTTTATCGATGGCTACAGACAACAGAAGGCATATATTGCTACTCAA GGGCCCCTGGCAGAGACCACTGAAGATTTCTGGCGGATGCTATGGGAGAACAACTCCACCATTGTCGTGATGTTGACTA AGCTTCGCGAGATGGGGCGGGAAAAGTGCCATCAGTACTGGCCAGCAGAGCGTTCTGCTCGGTACCAGTACTTTGTAGT AGATCCCATGGCTGAATATAACATGCCTCAGTACATCCTACGAGAATTCAAGGTCACTGATGCCAGGGATGGTCAGTCA CGAACTGTTCGTCAGTTCCAGTTCACTGACTGGCCAGAACAAGGAGTGCCAAAATCAGGAGAAGGTTTTATCGATTTCA TTGGACAGGTACATAAGACCAAGGAACAGTTTGGCCAGGATGGCCCCATCTCTGTGCACTGCAGTGCTGGGGTGGGCAG GACTGGAGTGTTTATCACACTGAGTATCGTCCTGGAAAGAATGCGTTATGAGGGTGTTGTAGATATTTTCCAAACAGTG AAGATGCTGCGAACACAACCTGCTATGGTGCAAACAGAGGATGAATACCAGTTCTGTTACCAGGCAGCTTTGGAATATC TGGGAAGTTTTGATCACTATGCAACATAAAA
Citation	Chilton JK, Stoker AW. Expression of receptor protein tyrosine phosphatases in embryonic chick spinal cord. Mol Cell Neuros. 2000 Oct;16(4):470-80
Copyright	Copyright © 2000 by Academic Press 470 All rights of reproduction in any form reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_205407.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Spinal Cord

ventricular zone, ventral horns, intermediate zone (arrow)

25-30

stage 28

Spinal Cord

LMC: lateral motor column (arrow)
MMC: medial motor column (arrow)
ventricular zone

31-36

stage 34

stage 36

Spinal Cord

LMC: lateral motor column
MMC: medial motor column
Ventricular Zone
ventricular zone

Entry 2

GEISHA Id	CRYPALPHA2.Chilton.2000	Data Source	Publication
Complete cDNA Template Probe	show TCGGCTCTGGGCCTGGGGGCCTTCACCCCGGAGGTCAGAGAGCGCACCTTGCAGTCTAAACCGTCTGCCCCCCCTCAAG ACATAAAGTGCGTCAGCACCAGATCCACCGCCATTCTGGTAAGTTGGCGGCCGCCTCCGGCCGAAAGCCAAAATGGCGT CCTGGCCGGCTACAGCGTCTACTATCGAGCGCTGGACTCTGAGGACACGGAGCTTAAGGAGGTGAATGATATCCCCCCA ACCACCAGTCAGATCCTGCTGGAGTCCCTGGAGAAGTGGACAGAGTATCGCATCACTGTCGTGGCTCATACGGAGGTGG GGCCGGGCCCGGAGAGCTCGCCAGTTATCGTCCGGACGGATGAAGACGTGCCCAGTGCGCCGCCTCGGAAAGTGGAGGT GGAGGTCCTGAACTCAACTGCAATCCAGGTGTTCTGGCGCTCTCCAGTCCAGAACCGCCAGCATGGCCAGATTCGCGGC TACCAGGTCCACTATGTGCGCATGGAGAATGGAGAGGCCCGGGGGCTGCCCCAAATCAAGGACATCATGCTGGCTGATG CCCAGGAGATGGTCATTGCTGGGCTCCAGCCTGAGACTGCATATTCCATTACCGTAGCCGCCTACACCATGAAGGGAGA TGGTGCTCGCAGCAAACCAAAAGTGGTCACCACTAAGGGTGCAGTCCCAGGGAAGCCCATCCTGTCTGTGCACCAGACA GAGGAGAATACTCTTCTGGTGAAATGGGAGCCTCCATTGGATGCAGAAGGCCAGGTGATAGGCTACCGGCTCCAGTTTG GCCGCAAGGATGTCGACCCCCTGGCTACTTTGGAGTTCACTGCCCTGGAGGATAAGTACACTGCTCCCAGCATCCACAA AGGCGCCACATATGTTTTCAAGCTGGCCGTGAAAAGCCGGGCTGGCTTTGGGGAGGAAGCTGTGCAGGAACTCACCACC CCTGAAGATATCCCCAAGGGTTACCCCCAAATCCTCGAGGCGAGCAACATCACTTCCATGTCGGTCCAGTTTGGCTGGC TCCCCCCCGTGCTGGCCGAGAGGAATGGAGCCATCGTCAAATACACCGTGGCCTACCGGGAAGCCGGTTCTCCCGGCAA CCCACTGGAAAAAGACCTGCCCCCCTCCCCAGAGAACTCGTACACCCTCAACGGCCTCAAACCCAACACTGCCTATGAT GTTAAAATCCGTGCTCACACCAGTAAAGGCCCCGGGCCGTACAGCCCGACCGTCCAGTATCGAACGTTCCAGCTGGATC AAGTTTTACCCAAAAACTTCAAGGTGAAGATGGTGACAAAGACATCTGTCCTTCTG
Citation	Chilton JK, Stoker AW. Expression of receptor protein tyrosine phosphatases in embryonic chick spinal cord. Mol Cell Neuros. 2000 Oct;16(4):470-80
Copyright	Copyright © 2000 by Academic Press 470 All rights of reproduction in any form reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # L32781.1).