GEISHA - A Chicken Embryo Gene Expression Database
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TNNI3
troponin I type 3 (cardiac)

Gene
Official SymbolTNNI3
Official Full Nametroponin I type 3 (cardiac)
CGNC ID49798
also known astroponin I, cardiac muscle|cardiac troponin I
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_213570
PolypeptideNP_998735
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.820
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Functionactin binding, metal ion binding
Biological Process
Cellular Componenttroponin complex
Links to other databases
Entrez Gene396428
Ensembl Gene
KEGGgga:396428

Entry 1

GEISHA IdCTNI.vandenBerg.2011Data SourcePublication
Complete cDNA Template Probeshow
CAGCACCGATGCACGATGGCTGAGGAAGAGGAGCCGAAGCCCCCCCCTCTGCGGCGCAAATCATCCGCCAACTACCGGG
GTTACGCTGTGGAGCCCCACGCCAAGAGACAATCCAAGATCTCGGCTTCCCGCAAGCTGCAGCTCAAGACGTTGCTGCT
GCAGAGAGCAAAGCGGGAGTTGGAGCGCGAGGAGCAGGAGAGGGCAGGAGAGAAACAGCGGCACCTGGGGGAGCTGTGC
CCCCCCCCGGAGCTGGAGGGCTTGGGGGTGGCCCAGCTGCAGGAGCTGTGCCGGGAGCTGCACGCCCGCATAGGGCGCG
TGGATGAGGAGCGCTACGACATGGGGACGCGCGTCAGCAAGAACATGGCCGAGATGGAGGAGCTGCGGCGCCGCGTGGC
CGGGGGTCGCTTTGTTCGCCCCGCGCTGCGCCGCGTGCGGCTGTCGGCCGACGCCATGATGGCGGCGCTGCTGGGCTCC
AAGCACCGCGTGGGCACCGACCTGAGGGCCGGGCTGCGGCAGGTGCGGAAGGACGACGCCGAGAAGGAGAGCCGCGAGG
TCGGCGATTGGCGGAAGAACGTGGACGCGCTGAGCGGCATGGAGGGGCGCAAGAAGAAGTTCGAGGCGCCGGGGGGGGG
GCAGGGCTGAGGACC
Citationvan den Berg G, Moorman AF. Development of the pulmonary vein and the systemic venous sinus: an interactive 3D overview. PLoS One. 2011;6(7):e22055. Epub 2011 Jul 11.
CopyrightThe work is protected by copyright held by the authors under the terms of the creative commons public license, attribution 2.5.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc AY463242.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Aorta
Atria
Outflow Tract
Sinus Venosus
Ventricles
 

Entry 2

GEISHA IdcTNI.Houweling.2002Data SourcePublication
Complete cDNA Template Probeshow
AAGCTGCAGCTCAAGACGTTGCTGCTGCAGAGAGCAAAGCGGGAGTTGGAGCGCGAGGAGCAGGAGAGGGCAGGAGAGA
AACAGCGGCACCTGGGGGGACTGTGCCCCCCCCCGGAGCTGGAGGGCTTGGGGGTGGCCCAGCTGCAGGAGCTGTGCCG
GGAGCTGCACGCCCGCATAGCGGTGGATGAGGAGCGCTACGACATGGGGACGCGCGTCAGCAAGAACATGGCCGAGATG
GAGGAGCTGCGGCGCCGCGTGGCCGGGGGTCGCTTTGTTCGCCCCGCGCTGCGCCGCGTGCGGCTGTCGGCCGACGCCA
TGATGGCGGCGCTGCTGGGCTCCAAGCACCGCGTGGGGACCGACCTGAGGGCCGGGCTGCGGCAGGTGCGGAAGGACGA
CGCCGAGAAGGAGAGCCGCGAGGTCGGCGATTGGCGGAAAAACGTGGACGCGCTGAGCGGCATGGAGGGGCGCAAGAAG
AAGTTCGAGGCGCCGGGGGGGGGGCAGGGCTGAGGGTGAGGACCCCCCCCGGAGCCCCCCCACCCCTCTCCACAAACCC
CCTCCACGGATCCCCCCACCAGGACCCTCACCATTCAGACCTTCACCTTTAAGGGCAGCGTTGTGGCATGCAGCACCTT
TAATCTCCACTCCCCCCCCCCCAATAATTTACTCCCCTCAATAAATTACCCCTCCCCCCAAC
CitationHouweling AC, Somi S, Van Den Hoff MJ, Moorman AF, Christoffels VM. Developmental pattern of ANF gene expression reveals a strict localization of cardiac chamber formation in chicken. Anat Rec. 2002 Feb 1;266(2):93-102.
CopyrightCopyright © 1999–2012 John Wiley & Sons, Inc. All Rights Reserved.
Comments“Authors indicated the probe sequence is associated with GenBank # M73703 “....
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 9
stage 9
stage 9
Heart
Myocardium
Splanchnic Mesoderm
cardiac mesoderm ( CM) , anterior intestional portal show as "aip" in photo
early tubular heart / cardiac mesoderm
19-24
stage 21
stage 24
stage 24
Myocardium
Outflow Tract
Ventricles
atrioventricular canal, inner curvature
outflowtract ( oft) and inflow tract ( ift)
25-30
stage 28
stage 30
stage 30
Atria
Heart
Myocardium
Ventricles
atrioventricular bundle indicated by arrow
epicardium designated by abbreviation " ec" in photo , " me" referes to mesenchyme
epicardium is designated with by "ep" in photo

Entry 3

GEISHA IdCTNI.vandenBerg.2007Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CAGCACCGATGCACGATGGCTGAGGAAGAGGAGCCGAAGCCCCCCCCTCTGCGGCGCAAATCATCCGCCAACTACCGGG
GTTACGCTGTGGAGCCCCACGCCAAGAGACAATCCAAGATCTCGGCTTCCCGCAAGCTGCAGCTCAAGACGTTGCTGCT
GCAGAGAGCAAAGCGGGAGTTGGAGCGCGAGGAGCAGGAGAGGGCAGGAGAGAAACAGCGGCACCTGGGGGAGCTGTGC
CCCCCCCCGGAGCTGGAGGGCTTGGGGGTGGCCCAGCTGCAGGAGCTGTGCCGGGAGCTGCACGCCCGCATAGGGCGCG
TGGATGAGGAGCGCTACGACATGGGGACGCGCGTCAGCAAGAACATGGCCGAGATGGAGGAGCTGCGGCGCCGCGTGGC
CGGGGGTCGCTTTGTTCGCCCCGCGCTGCGCCGCGTGCGGCTGTCGGCCGACGCCATGATGGCGGCGCTGCTGGGCTCC
AAGCACCGCGTGGGCACCGACCTGAGGGCCGGGCTGCGGCAGGTGCGGAAGGACGACGCCGAGAAGGAGAGCCGCGAGG
TCGGCGATTGGCGGAAGAACGTGGACGCGCTGAGCGGCATGGAGGGGCGCAAGAAGAAGTTCGAGGCGCCGGGGGGGGG
GCAGGGCTGAGGACC
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI Acc# NM_213570.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 25
Heart
 
31-36
stage 32
stage 32
stage 36
stage 36
stage 36
Heart
Valves
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.820

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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