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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CYP26B1
cytochrome P450 family 26 subfamily B member 1

Gene

Official Symbol	CYP26B1
Official Full Name	cytochrome P450 family 26 subfamily B member 1
CGNC ID	12034
also known as	cytochrome P450 26B1\|cytochrome P450, family 26, subfamily B, polypeptide 1, Cytochrome P450 26B1 , P450 26A2, P450 retinoic acid- inactivating 2, P450RAI-2, Retinoic acid-metabolizing cytochrome
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_426366
Polypeptide	XP_426366
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.37562

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	56603	ENSG00000003137		MIM:605207
Mouse	232174	ENSMUSG00000063415	All phenotypic alleles (5):Targeted, knock-out(2) Targeted, other(3)	MGI:2176159
Xenopus	780112, 100170648			991499
Zebrafish	324188	ENSDARG00000077121	ZDB-GENE-030131-2908	ZFIN:ZDB-GENE-030131-2908

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428809
Ensembl Gene	ENSGALG00000016102
KEGG	gga:428809

Entry 1

GEISHA Id	Cyp26B1.Maden.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGCTCCTAATGGAGCAAAGCGAGCAAGAGGAGCCCAAAGGCGCGGGTGTGCGGCCTCATGGGGACACTGCTGGGGGTT GGGATTCTCCTTGCTATGAGGGGCCCAAAGCCTTTGAGGTTTTCTCCAAAATCTTCAGCCACGAGGCTCTGGAGAGCTA TCTCCCCAAGATCCAGTTGGTGATCAAAGACACCCTGCGGGCTTGGAGCAGCAACCCCGATCCCATCAACGTCTACCAT GAGGCCCAGAAGCTCACCTTCCGCATGGCCATCCGCGTCCTGCTGGGCTTCCACATCCCCGACGAGGAGCTCAGCCGTC TCTTCGAGGTCTACCAGCAGTTTGTGGAGAATGTCTTCTCCTTGCCTGTGGATCTGCCCTTCAGTGGCTACAGGAGGGG CATCCGGGCACGTGAGACACTGCAGAGGGGGCTGGAGAAAGCCATCCAGGAGAAACTTCAGAACACACAGGGTAAGGAC TACGCCGATGCACTGGACATCCTGATAGAGAGCGGCAAAGAACACGGCAAGGAGCTCACCATGCAGGAGCTGAAGGACG GCACCCTGGAGCTCATCTTCGCCGCCTACGCCACCACGGCCAGCGCCAGCACCTCTCTCATCATGCAGCTGCTCAAACA CCCGCGGGTGCTGGAGAAGCTGCGGGAGGAGCTGCGCAGCAAAGGCATCCTGCACAATGGCTGCATCTGCGAGGGCTCC CTGCGCCTCGACAACATCAGTGGCCTTCACTACCTGGACTGTGTCATCAAGGAGGTGCTTCGCCTCTTCACCCCCATCT CCGGCGGGTACCGGACGGTGCTGCAGACCTTTGAGCTGGATGGTTTCCAGATCCCAAAAGGCTGGAGTGTGATGTACAG CATCCGGGACACCCATGACACTGCCCCTGTCTTTAAGGATGTGGACGTCTTTGACCCCGACCGCTTCGGGCAGGGCCGC AGCGAGGACAAGGAGGGCAGGTTCCACTACCTCCCCTTTGGAGGGGGTGTACGGACCTGTCTGGGCAAACACTTGGCCA AGCTCTTCCTCAAGGCCCTGGCCATCGAGCTGGCCAGCAGCAGCCGCTTCGAGCTGGCCACCAGGACTTTCCCCAAAAT CACCTTGGTGCCCGTGGTCCACCCGGTCGACGGACTCAAGGTTAAATTCTTCGGACTGGATTCCAACCAGAACGAGATC CTGACGGGGACGGACGTCATGTTGGGGGCCACTGTGTAG
Citation	Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A. (2007). Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo. Int J Dev Biol. 2007;51(3):191-200.
Copyright	"Reprinted from Int. J. Dev. Biol., 51, Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A, Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo, 191-200, Copyright (2007), with permission from Copyright © 2007 UBC Press". All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #XM_426366). Images are quail, but sequence and map shown are chick.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 20

Retina

Quail

31-44

stage 44

Eye

Fig. 2. All images for comparison.
Quail

Entry 2

GEISHA Id	CYP26B1.Wilson.2007	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATGTCAGGCAGCACCCTGTGGGCGGGGACCACCCCCAGCTCCCTTTGCTATAAAGCACTGCGGGTTCCCCCGTTGCGGG GAGCGCAGCGGGACGGGGCGGCGGGCAGCACCCCGAATCGGGCCGGGCTTCCAGGTGCGAAGTGGACTGTTAGAGAAAG CAAAGAGGAGGATGTTGGGGCTCCATGGAATCCTCTGCTCACTCTTCTGTAGGTTTTCTCCAAAATCTTCAGCCACGAG GCTCTGGAGAGCTATCTCCCCAAGATCCAGTTGGTGATCAAAGACACCCTGCGGGCTTGGAGCAGCAACCCCGATCCCA TCAACGTCTACCATGAGGCCCAGAAGCTCACCTTCCGCATGGCCATCCGCGTCCTGCTGGGCTTCCACATCCCCGACGA GGAGCTCAGCCGTCTCTTCGAGGTCTACCAGCAGTTTGTGGAGAATGTCTTCTCCTTGCCTGTGGATCTGCCCTTCAGT GGCTACAGGAGGGGCATCCGGGCACGTGAGACACTGCAGAGGGGGCTGGAGAAAGCCATCCAGGAGAAACTTCAGAACA CACAGGGTAAGGACTACGCCGATGCACTGGACATCCTGATAGAGAGCGGCAAAGAACACGGCAAGGAGCTCACCATGCA GGAGCTGAAGGACGGCACCCTGGAGCTCATCTTCGCCGCCTACGCCACCACGGCCAGCGCCAGCACCTCTCTCATCATG CAGCTGCTCAAACACCCGCGGGTGCTGGAGAAGCTGCGGGAGGAGCTGCGCAGCAAAGGCATCCTGCACAATGGCTGCA TCTGCGAGGGCTCCCTGCGCCTCGACAACATCAGTGGCCTTCACTACCTGGACTGTGTCATCAAGGAGGTGCTTCGCCT CTTCACCCCCATCTCCGGCGGGTACCGGACGGTGCTGCAGACCTTTGAGCTGGATGGTTTCCAGATCCCAAAAGGCTGG AGTGTGATGTACAGCATCCGGGACACCCATGACACTGCCCCTGTCTTTAAGGATGTGGACGTCTTTGACCCCGACCGCT TCGGGCAGGGCCGCAGCGAGGACAAGGAGGGCAGGTTCCACTACCTCCCCTTTGGAGGGGGTGTACGGACCTGTCTGGG CAAACACTTGGCCAAGCTCTTCCTCAAGGCCCTGGCCATCGAGCTGGCCAGCAGCAGCCGCTTCGAGCTGGCCACCAGG ACTTTCCCCAAAATCACCTTGGTGCCCGTGGTCCACCCGGTCGACGGACTCAAGGTTAAATTCTTCGGACTGGATTCCA ACCAGAACGAGATCCTGACGGGGACGGACGTCATGTTGGGGGCCACTGTGTAGAGCCCACCAGGGATGGGAGGCTGGGG ATGGAGGGGTGGGGTGGGGACAGGGGGATGAACAGGAGGGGAGAGGAACGAGGAGCTTCTCCACGACGCTCACTTGGCA GAGCCTCCAGGTTGGGACTGTTTCCTCCACCGGCAAAGCTGCCAAAATCCTTCTGCTCCGGGCATGGAGGAGCTTGGGG TGGCATCGTGCCTCTCGCTTCCTCCAGAAAGAGGAAGAGTTGTGAATCCCGAGTAGAACTGGGACTGTCTGACCATACA CAGTATCTAAATATTATAAATATATATATATAAATATCTATAAAACACTTCTGCTGCCAGGAGGAGCGCTGCGAAGCCC CGACGGTGGGAAAGGCTTTGGGAACCAGCTGGCAGCCAGTGGTCTGGTGGCCCGGCGTGGCCCGCCAAGCTTGTTTTTA ACAGTGTTAAATTAGCTGGTGATAACAGTGTTTTATTTTTGTTGTTGTTGTTGTTCGTTTGTTTGGTTGTGTTTTTTTT TTTATTATTTCGGGGCTCTGGGGGCTGCCCTGGGTGAAGGGGAGATGAGTGATGCCCATTCACATCCCATGCCCTTGGG CAGGTTTGGGGGAGTGTTGCCATTTCACCTCTGCCGCGGGACCAAAAAACCCTGTGGTGCCTTGTCTGGGGCTGAGCCT TCCCTCCAAAGCCTTGGATGAGCGTGGTTTGGGGTAGGGGGGGAGCTCCATTTTTTTTTTTCTCCTTGAGTTTCCTGCT GCTGCTACACATCCTGTGTGCACCGCTCCCCCCTCCCCACGCAGAGGCATCCGTTTGGGAGCATTTCGGTGCCTTTGCT CTCCCTCAGGGTGCGGGCACCTCCGCGATCTGCCGCAGCTCTGTGAGCACCGAGCTGCTCCGCTTGGGTGCACCCTCTT CCACGGGAGGCATTTTTTGCATTAAAGGTGATGTCTATAAATAAGCCACCGTCCACATCGTTTGTCTCGTGTCTGGGTT TTGGTTGGCGATGGGAGAGCTCTGCAGGAAGGAGAGCCGTGCCCAACGCATTGCGGCTCAGGCTATCATGAGATTCGTA TGATAGGTGGGTTTATTTGGTTTGATTCGATTTTTTTTATTGGCATGAGAAAGGCTTCCATGTGTTGCGTGAGACAGAT GGGTTGTGTTGAAAGCAGACATGGCCTCGCATGCAGGTGCAGAGCAAAGCCTGGTGTTTGGTTCAACCTGAGCATCAGG TTGGGAGATCCCATTGGGATTGGAGGCCCTTCATCTCGGGGAAGATCCATGCAGCCTTGCTCTCTCCCATCTCCTACCC TGGAGGATGAGGTAAGGATGAGGACCATGGGGTGGTGGGGAAAGATCTCATGTTGGGGTGGGCAGCTTGGCTTTTGGCT TTAAAGGTGTCCAGATAAGTCGAAGGGGCTGAAATGGGAAGGATGAGGGGGCAGACGTTGCTTACCAGGTTGCTTTGCA GGTTGTGCTCTTGATGAGTGGGTGCCTCGTTGGAAGGTCAAAGGATGTGTGGGTGAGTGATGGTGATGGCTGCCTCTGC CATCGTCGTCTGGTGGAGTGAGGAGCGGGGAGGCAGAGTTTTAGCTGGGGGAAGCACTTAAGGTTGGGTCAGCCAAGCT GCCAGAAACCCCCAAGAGCACCCCAACGGATGGTCTCCACTCACACCAGGGAGCACGACTTGATTTTCAGGTGGATTTC ACCCCAAATAAAGCTCCCAGTCCTCTATAAAGGATGCCACTGAAGTCTGGGTCTTGCCTTCTGGTCGGTAAGCAATGTG CCAAACCCAAGAGGGAGGTCTGAGTGCTACGTGCTACCTGGGCACTGTGTCCCTGCAGTGGAGGATCAGCCAGTTTGCC AACCTGGGAACTCCAAGGGAAATGTTAGGCACTAGTGAGACTTCAGGCATTGTCCTTGTCCCTGATGGAGAGAAAACAT TTCCAGAGATAAAAGGGGCTTAATTGCAATGAGAATCCCAACAGGAAGCAAAGGAGAACATAACCCGAAAGCAGTGGGA ATGCGTGAGTCTCCTGCGGGCAAGTGTGTGGAGAAAGGTTTGCGGCATGCAAGAGTCATTGTCCATGGTGTTGGCTGAT GATGAACACGTGTAGGGCACAGAGATGAGGCAGGAGGTGGAGGATGCAGGATGAAAACACGCCAGGAACC
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_426366.4

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Hindbrain
Rhombomeres

25-30

stage 26

Hindbrain
Rhombomeres

31-32

stage 32

Hindbrain
Rhombomeres

Entry 3

GEISHA Id	CYP26B1.Reijntjes.2010	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show `TCGGCACTGGCTACCCTCGCGGCGTGCTTGGTGTCACTGACTTTGCTGCTGGCCGTGTCCCAACAGCTGTGGCAGCTCC GCTGGGCTGCCACCCGCGACAAAACCTGCAAGCTACCAATCCCTAAAGGCTCTATGGGATTCCCTTTAATCGGAGAAAC CTTCCACTGGCTCCTGCAGGGTTCGTGCTTCCAGTCTTCGCGACGGGAGAAGTACGGCAACGTGTTCAAGACGCACCTT TTGGGGCGGCCGCTGGTGAGGGTGACGGGAGCGGAGAACGTGCGGAAGATTCTGATGGGGGAACACCACCTGGTGAGCA CCGAATGGCCGCGCAGCACCCGCATGCTGCTGGGACCCAACACCGTGGCCAACTCCATCGGGGACATCCA`
Citation	Reijntjes S, Francis-West P, Mankoo BS. Retinoic acid is both necessary for and inhibits myogenic commitment and differentiation in the chick limb. Int J Dev Biol. 2010;54(1):125-34
Copyright	© 2009 UBC Press
Comments	The sequence was obtained from NCBI (acc # BU433178.1) using the information provided in the publication as described in Reijntjes et al., 2010.