GEISHA - A Chicken Embryo Gene Expression Database
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CDX1
caudal type homeobox 1

Gene
Official SymbolCDX1
Official Full Namecaudal type homeobox 1
CGNC ID4232
also known asCDX-A, CDXA, CHOX-CAD1, CHox-cad, homeobox protein CDX-1|caudal type homeo box transcription factor 1|caudal type homeobox transcription factor 1|caudal-type homeodomain protein A|caudal-type homeodomain protein, CdxA|homeobox protein CHOX-CAD, Homeobox protein CHOX-CAD, CHOX-CAD, CdxA
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204676
PolypeptideNP_990007
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.210
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1044ENSG00000113722MIM:600746
Mouse12590ENSMUSG00000024619All phenotypic alleles (6):Targeted, knock-out(3) Targeted, other(3) MGI:88360
Xenopus395055, 397695485395
Zebrafish100004956, 405762ZDB-GENE-070615-29, ZDB-GENE-050510-1ZFIN:ZDB-GENE-070615-29, ZFIN:ZDB-GENE-050510-1
Gene Ontology
Molecular FunctionRNA polymerase II distal enhancer sequence-specific DNA binding, more...RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription, sequence-specific DNA binding transcription factor activity, transcription regulatory region sequence-specific DNA binding
Biological Processanterior/posterior pattern specification, bone morphogenesis, multicellular organismal development
Cellular Componentnucleus
Links to other databases
Entrez Gene395397
Ensembl GeneENSGALG00000005679
KEGGgga:395397

Entry 1

GEISHA IdChEST637p4Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AGAATGAGCCGGTGGGATGCTTCCTGCACGGTCTTCCTGGTGATCCAGCTGCCTGCTGCTTTGGAGCAGCTTTAGTGAG
GCTGAACTAGGGGAAAGGCTTGGCTGGACTCGAAGCAGAATAAATCTCAGCTGAGATTGTCTGCAGGATCTGCCATACC
TGGAGCGAGTTGGACAACAGGAGCTGGGTAGGACCCTCAGCAGTGGGGCTGGAGGGGGAATGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Epiblast
Primitive Streak
 
4-6
stage 4
stage 5
stage 6
Early Mesoderm
Epiblast
Primitive Streak
 
7-12
stage 7
stage 8
stage 9
stage 10
stage 12
stage 12
Early Mesoderm
Extraembryonic
Forebrain
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Primitive Streak
 
13-18
stage 13
stage 17
stage 17
stage 18
stage 18
Extraembryonic
Gut
Head Mesenchyme
Heart
Lateral Plate Mesoderm
Spinal Cord
 
19-24
stage 20
stage 21
Gut
 
25
stage 25
stage 25
Gut
 

Entry 2

GEISHA IdCdxA.Matsushita.2002Data SourcePublication
Complete cDNA Template Probeshow
CCCCCTCCACCAGCCATAGACACTGAGAGATAAGCACTACACGGCAGAGCTTGTTGCTGAGCGCCCAAAGACACCACGT
CCCCTGGGGCATGGTGGCTCTGTTGCCTTCCCAAGAGGCTGATGAGCTCTGTCCTACACAAAGCCCATACGTTAGGTAG
TGCTGTTCTCCTGTAGGAAACGTGCGCTGGTCTTCGGTATTGGTAGCCCAAAACCAGTGGGATGAGTCTTTAAGTGGTG
CTGGAGGACCCTTTCTGTGGCACATCAGAATGAGCCGGTGGGATGCTTCCTGCACGGTCTTCCTGGTGATCCAGCTGCC
TGCTGCTTTGGAGCAGCTTTAGTGAGGCTGAACTAGGGGAAAGGCTTGGCTGGACTCGAAGCAGAATAAATCTCAGCTG
AGATTGTCTGCAGGATCTGCCATACCTGGAGCGAGTTGGACAACAGGAGCTGGGTAGGACCCTCAGCAGTGGGGCTGGA
GGGGGAATGGGGGCTCCTTAAACTGAGACAATGACAGTGAGTGTCCCCCATGTCCCCCAGCCACCATCCCCAGCTCCAT
CCCTGCAGCAACTCAGGGCCATCGCGAGACCTGCAGACATCTGTCTCACAGATGGACCATCTGCGGAGGTTTTGAGACC
ACCTTCCAGCATGGAGGAACAAGAACAAGGTTTGCAGTTAGGACACTGGACAGCTCTAGGTTGCCCAGAGGGGCCACTC
ATCTACCGATGGCATTGCAGAACCTGCACAGCTCCATGCTGCACCAAGGCACTGCCAGCTGCCAGGACCATCATGGTGA
TGGGACATGTCCTGGCACAAGATGATGGATAGCTGGCTTCCATAGAGAGGGATGGGTGGATTTGTGCTGTTTTCTCTGA
AACACAAAAGGCTCTGGGTTTTGCCCACTTTGTACTCCTCCATGTGCTGCACATTGGTAACCAATGGCTTTTTTTTCCT
GCTGGAAATCCACAGTTAAAATTCCCCTTAATCCTGCTGACTCCTGGGATCTCTACTGGCCCAGCTACCTTACAGCCCA
GTTTTGGATGCCCCAAAGGGCGTGCTGGGACACAGGAGGGTTTGAGGCTCCTGCTTGGTTCTGTGGCTTCCCAAGACCA
AGGTGAGGGTGCAGAGGCTCTGATGGTTCTCTCCTAGCACCATCATGCTGAGCCCCAGCAGGAACAAGAAGTGGAGGTG
TCCCTGTTGCCTGCAGAGCCCCTCACCCATTCCCAGCCCATTCTGGCCCAGAACTCACAGTGTTAGGGGTTTTAAATAC
TGGGATTTAAGCTCCTTGACACCCACTGCACCTACAGCCCCTTAATAGGGTCTGCATCCCCCACCATGGCGACCAGTGA
CACCTCCCTGGGGCCACCACTGCTACTTTGCAGCAAAGGCAGACACCGGTGTTGGCTTGGGACTTCAGCTCAGGGCTTG
TGTACAGAAGGCAGAACGTTTTATTTTCTAGGCTTTGGTCAAAATAAAAGCGAGCAGGAGCCCTGT
CitationMatsushita S, Ishii Y, Scotting PJ, Kuroiwa A, Yasugi S. Pre-gut endoderm of chick embryos is regionalized by 1.5 days of development. Dev Dyn. 2002 Jan;223(1):33-47.
CopyrightCopyright © 2002 Wiley-Liss., Inc.
CommentsInsufficient information provided to identify probe sequence. Matsushita et al indicate that probe was generated using a 711 nt fragment of the 3' UTR. Entire UTR is mapped above.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
Endoderm
Endoderm, early
Extraembryonic
extraembryonic junctional endoderm

Entry 3

GEISHA IdCdxA.Hiramatsu.2004Data SourcePublication
Complete cDNA Template Probeshow
GCTGCGTGACACCCGGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGG
AGAAGATGTATGTAGGCTATCTTTTGGATAAGGACACCAACATGTATCCCAGTCCCGTCCGGCATCCCAGCCTCAACCT
CAACCCCCAGAACTACGTGCCGGGGCCACCCCAGTACTCGGACTTCGCCAGCTACCACCATGTGCCAGGGATTAACAAC
GACCCGCACCATGGGCAGCCCGCAGCTGCCTGGGGCTCACCCTACACCCCTGCCAAGGAGGACTGGCACTCATACGGCA
CCGCTGCCGCCTCCGCCGCCACCAACCCGGGGCAGTTTGGATTTAGCCCCCCGGATTTTAACCCCATGCAGCCCCATGC
GGGCTCTGGACTCCTGCCTCCAGCCATCAGCAGCTCGGTGCCACAGCTGTCCCCTAATGCACAGAGGCGCACCCCGTAC
GAATGGATGAGGCGCAGTATTCCCAGCACCAGCAGCAGCGGCAAGACGAGGACAAAGGACAAGTACCGGGTGGTGTACA
CGGACCACCAACGCCTGGAGCTGGAGAAGGAATTTCACTACAGCCGCTACATCACCATCCGCCGTAAGGCCGAGCTGGC
TGCTGCCCTGGGGCTCACTGAACGGCAGGTGAAAATCTGGTTTCAGAACCGGAGGGCGAAAGAGAGGAAGGTGAATAAA
AAGAAGCTGCAGCAGCAGAGCCAGCCCACCAGCACCACCACGCCAACCCCCCCAGCCGTGGGCACGCCAGGGCCCATGG
GGACCCTCTGCAGTGGCAGTGCCCCAAGCCTTGTCTCCTCATCTCCGCTCACCATCAAGGAGGAGTTCATGCCTTAGCC
CCCTCCACCAGCCATAGACACTGAGAGATAAGCACTACACGGCAGAGCTTGTTGCTGAGCGCCCAAAGACACCACGTCC
CCTGGGGCATGGTGGCTCTGTTGCCTTCCCAAGAGGCTGATGAGCTCTGTCCTACACAAAGCCCATACGTTAGGTAGTG
CTGTTCTCCTGTAGGAAACGTGCGCTGGTCTTCGGTATTGGTAGCCCAAAACCAGTGGGATGAGTCTTTAAGTGGTGCT
GGAGGACCCTTTCTGTGGCACATCAGAATGAGCCGGTGGGATGCTTCCTGCACGGTCTTCCTGGTGATCCAGCTGCCTG
CTGCTTTGGAGCAGCTTTAGTGAGGCTGAACTAGGGGAAAGGCTTGGCTGGACTCGAAGCAGAATAAATCTCAGCTGAG
ATTGTCTGCAGGATCTGCCATACCTGGAGCGAGTTGGACAACAGGAGCTGGGTAGGACCCTCAGCAGTGGGGCTGGAGG
GGGAATGGGGGCTCCTTAAACTGAGACAATGACAGTGAGTGTCCCCCATGTCCCCCAGCCACCATCCCCAGCTCCATCC
CTGCAGCAACTCAGGGCCATCGCGAGACCTGCAGACATCTGTCTCACAGATGGACCATCTGCGGAGGTTTTGAGACCAC
CTTCCAGCATGGAGGAACAAGAACAAGGTTTGCAGTTAGGACACTGGACAGCTCTAGGTTGCCCAGAGGGGCCACTCAT
CTACCGATGGCATTGCAGAACCTGCACAGCTCCATGCTGCACCAAGGCACTGCCAGCTGCCAGGACCATCATGGTGATG
GGACATGTCCTGGCACAAGATGATGGATAGCTGGCTTCCATAGAGAGGGATGGGTGGATTTGTGCTGTTTTCTCTGAAA
CACAAAAGGCTCTGGGTTTTGCCCACTTTGTACTCCTCCATGTGCTGCACATTGGTAACCAATGGCTTTTTTTTCCTGC
TGGAAATCCACAGTTAAAATTCCCCTTAATCCTGCTGACTCCTGGGATCTCTACTGGCCCAGCTACCTTACAGCCCAGT
TTTGGATGCCCCAAAGGGCGTGCTGGGACACAGGAGGGTTTGAGGCTCCTGCTTGGTTCTGTGGCTTCCCAAGACCAAG
GTGAGGGTGCAGAGGCTCTGATGGTTCTCTCCTAGCACCATCATGCTGAGCCCCAGCAGGAACAAGAAGTGGAGGTGTC
CCTGTTGCCTGCAGAGCCCCTCACCCATTCCCAGCCCATTCTGGCCCAGAACTCACAGTGTTAGGGGTTTTAAATACTG
GGATTTAAGCTCCTTGACACCCACTGCACCTACAGCCCCTTAATAGGGTCTGCATCCCCCACCATGGCGACCAGTGACA
CCTCCCTGGGGCCACCACTGCTACTTTGCAGCAAAGGCAGACACCGGTGTTGGCTTGGGACTTCAGCTCAGGGCTTGTG
TACAGAAGGCAGAACGTTTTATTTTCTAGGCTTTGGTCAAAATAAAAGCGAGCAGGAGCCCTGTGAAAAAAAAAAAAAA
AAAAAAA
CitationHiramatsu H, Yasugi S. Molecular analysis of the determination of developmental fate in the small intestinal epithelium in the chicken embryo. Int J Dev Biol. 2004 Dec;48(10):1141-8.
Copyright"Reprinted from Int. J. Dev. Biol., 48,Hiramatsu H, Yasugi S , Molecular analysis of the determination of developmental fate in the small intestinal epithelium in the chicken embryo, 1141-8, Copyright (2004), with permission from Copyright © 2004 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AB046532 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Midgut
Small intestine
7-12
stage 9
stage 12
Midgut
Small intestine
31-44
stage 44
Midgut
Comparison with other molecules
Small intestine

Entry 4

GEISHA IdCdxA.Chapman.2008Data SourceDirect Submission
Complete cDNA Template Probeshow
AAGCTTTTCCAGCCACAGGCCCCTCTGGCAATACATAGGCCAAAGAGGAGGAAAAGAAGGAAGTTATCACTGGTGGATC
TTTATGGCCCAATTATCGTCCCCTGTCCACCCTGGAGCTGGTGGCACGCTGCTAGAAGGCACCTGGCCGTGCTGCTCCG
TGCTGAGCCCTTCACCTGCTGCAGGAGGGTGCAGGTAGGGTGCTCATGGACCCATGGAGCCCTGCACCCCCAGCCCAGA
CATGGCTGGGACATGCCCAGTAGCAGCAGGGAAGCTCTTGTGTGTTGCATGCGCTGAGCTCCTACAACACAGCAGCTTT
GCTGGCTTTGTTACCATTTTCCTTTTAACCCCATGAATCTGAAAAGCAATCCCACCTTCAAACCTCTTCACGGATTCAT
AGCTACAATTGCAAAAAATGGTGAAAGTCTGCTGTTTTATCCTCTTCTCTCAATTGCATCTTAAACCCTTCCCTTCCCT
TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCACACACTGTGACTG
CAGAAGGGACCAGCGATGTGCTGCAATGGCACAGAGGTGATCTCAGTCCCTCATCCCCTCCAGAGCACAGGTGTGCCTG
GCCTTCCTGGTGATGAGTGGATGGCCTCTGCTTGGGGACAGACGTGATTTTGGGGCATGCATCCACAAAATCATAGAAT
ATCCCAATGGATTGGACCCATAAGGATAATTGTGTCCAGCTCTGTCTGTGCATCCTGTTCTCTGTGGCTGGGCTGAACT
TGGCTATGGGGCTCGAGGGATGAGTTTGCCCCCAGATGCTATAAATGGAGGGGGACCCAGAGTGACCTCTTCCCACCAA
TCCCATTTCCAAAACTGGCAGATGCATTGCTGGGGTTCGGTGTCCCCATCAAAAGTGCTGGGGCAATTCCATTGGGCAG
TTCATGGGTGATTCAGTCCTTCAGCCAGGATTTGATGTGAGCTCTCACCCCAAGCTGCCCTTCTCCTGGCGCACAAATG
GCTTTAGGGACAGGGTGACCTCCTTTGGGGCATCTTCAAACACAAAGCCAGCTGTGCCACACTGTCCCCAAAACCAGCT
GCCACAAAGGGACCGTGGCCGGTGGCATGGGGACAGCCCGTGCTGGTGACCACAGAGGGAACGCGGGGCGGTGGGAGGT
TCGGATTGCCCCGCACGGCTGGGGTTCCTGCACTTTGAAATGCAACCCTGCCTTTCAATGCAAATGCTGCGAGAGGTTG
GGCCCAATAAAAGCCTGTGGGCAGGGAGGTGCCTGGCCCCGGGACACAGCTCCCCAAGGCGCCCAGGTGAGCGCGGTGA
AGGAGGGGCGGCCGCTGCGTGACACCCGGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCA
CAGAGCCAGGTGGAGAGGATGTATGTAGGCTATCTTTTGGATAAGGACACCAACATGTATCCCAGTCCCGTCCGGCATC
CCAGCCTCAACCTCAACCCCCAGAACTACGTGCCGGGGCCACCCCAGTACTCGGACTTCGCCAGCTACCACCATGTGCC
AGGGATTAACAACGACCCGCACCATGGGCAGCCCGCAGCCGCCTGGGGCTCACCCTACACCCCTGCCAAGGAGGACTGG
CACTCATACGGCACCGCTGCCGCCTCCGCCGCCACCAACCCGGGGCAGTTTGGATTTAGCCCCCCGGATTTTAACCCCA
TGCAGCCCCATGCGGGCTCTGGACTCCTGCCTCCAGCCATCAGCAGCTCGGTGCCACAGCTGTCCCCTAATGCACAGAG
GCGCACCCCGTACGAATGGATGAGGCGCAGTATTCCCAGCACCAGCAGCAGCGGTAAGGAAACCCCCAGCCCTACACCT
GGGCTCCTTCCTCCACCTGGGAGCCCTCAGCTTGGAGTCCTGCAGGGCCGGATCCTGCTCTGGGACCTACCCCAATGGG
GAGAGCTGTGGGGCTGGCGAGGTGGCATGGATTGAGGATGGGCATGGAGAGCATTGGTGTGCGGGTGACCCCGTTCTGC
TGGCAGTCAGAATGAGAGCTCTGCTCTGCGTATGGGAAGTCCTTGTCATGGCCAGTCCAGGGTAGTTCATGCTCATCGT
CATGGTGGTGGGGTGCTCCTGTTGGCGCAGTGCTGTGCTGTGTGTGCAGGGTGCTGCAAGCACTGCATGTGCACGGCAC
TCACTGCACAGAATCGGCGAGCACATACAGGCAATACTGAGTGCTCAAAGTGCATGCAAGGTGCAATGTGTTGGGGACC
GTGCCACATGCAATGTGTGTGTGGGTGCTCTGGGTGTTGCACGGCACACAAACGTATGCACAGCTCCTGTGTCTGGCAC
TGGGCAGCCATACTGTTCCCGTGCCCTATCTCCTGTCCCCATGTCCCATCCCCTGTTCCTCTGCCTTATCCCCCGTCCC
TTGTCCCTGTATCCTGTCCCCGACCCCGGGGTCTTGTCCTGCTGAACTCCTGACCCCGGCGGGGTGGGTGGGTGAAAGT
GTCCGTGCCCTGCAGCCCTCCGCCCGTGGACGCCCCACTGCCCACTTCAAAGGCGGTGGGCAGTCCCCCCTTGGGGCCA
GCCCAAATTGACACGGGCTTCTCTTTGTCATGGAGATGCCGCCGGCTCCTTTGGCATTGAGGCGAGGTTGGGGAGGGCC
TTTGCCCTTTCATGTTCCCCTCCAGGGTTTCCAGCCCGACCGCCGTCCTCTCCGTCTCCCCCTTGTGCGGGGGCTCCCT
GTTTGAAAATGGTGTAAAATGCCTCATTTGTTGGCTTGCTTCTGGTTTCCTGGCATCGCTGCGTTGGGTTTTCCCCATG
CATGGCGCTGGGGATGTGACAGCCAAGAGCTGCACGGAGACTGAGTGGTGCTGAAGGGTCTGGGCACGGCGATGCGCTG
CGGTGCCCACATCCTCACTGTCCTACCCCCTGCTCCTCTGCCCCATCCCCAGGCCCCATGCTCTGGAAATTGCATGGAA
ATTGCTGTGAGACTGTGCTGGATGCTGGGGTTGGGGTCATCCCGGTGGGAGCGGGGGTTGCGGTGGGGCTGAGCATCCC
AGGAGGTGGAAAGCAGCGAGCTCTGCTCTGCAAGAAGGAGGGAGAGGCAGGATGGTATTTCCTGGTCCATTTTAAGCAC
TGAATATAACTCTTTAGGAAAATTGCCCCCCTCTCCTCATACGTGTTGAATGGGAGCCCACAGCTTCTGTGGGATTTGT
AGGTCCAAACAGTTCGGTGTCTTCTGGGAAAGGTGGGAGGGAAAATGAAGGAGGGGGGGGAAACCATAAGAACACCTCT
GGATGAAGGGAGTGAGACATAGCGAGGGCAGGAAGGTTCCCCTGCCTGAGTCACACAGCAATGGAGTGATTGAATTCTG
GAAAAATCAGCCGTTGCGCAGTTTGTATCTCTTAGATTGGACGCACACAAAGGGACAAATGAGCCAGCTGTTGTCCCCT
GCACGTGAAGCAGAGAGGGTGGCAGGAGCAAAACCCCCTTGGTTATATGGGACGCCTCTCTACAAACCCCCCCAGCCTT
GAGGTTTCTGTCCATGGGACCGTGCAGTTGAATTCAAACCCACGGCGCCTGCCCAGGCTGCCTTTACATAAACCAGGAG
GTGGGTTTGACACAGATAAGGGTGAAATGTTTTATTGGAATCAATAAACTGTACATTAATCAGGCTGGATGGGTTATAC
CCCTCTCCACGCTGTGGGAGTAGGAAATGAATGCGCGGGCTATAAATACGGAGAGCTCCATTGCGAGCGCTGTAAATCA
TCCGAGGGCTGTAAATTAAGGTTCCCTCTGTCTTCCCTTGTATAAACAGCCATCGGCCGCGGCGTGAAGGCGCTCGGAA
GGAGCCTTGCCATGCTCAGAGGCAATGCAAGGCAGGGACGGAGCGTGCCGGGGGGTTCTGCCGGCGTGATGGAGAGCTG
GGAGAAATCGATGAGAAATCTCCCAGTGACTCAGTGCGGAGTCAGACCTCATGGGGCGATGAGCTGATATAGCTGCTGC
TAAGAACGTGCGTGCCTCACCCAGCAGAGCCAGCCACGGCACAGGGCAAAGCTCAGCCCAGGTAACGGATGCTCAAGTG
CCCTAAATTGGGAAACAGGAGGAACAAGATGTCCCCGTGCCTCCTTTCTTCCCGAGCATCAGCCCTTTTTCTGCTCATA
AAATCTTCACGAGCACAGTGTCAGACCCTCACGCTTCTCCTTACTCGTAATTATTTGCAAACTTCCTTGTGAATGGCAC
CCCTGCTCTATAAAAAGCTCAAGAAGGCGCTGGAAACGGCAGCGCGCTGAACTTTGAAGTTCACCCCCCTTCC
CommentsProbe apparently genomic fragment overlapping with coding exons. Images Provided by Susan Chapman.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
Primitive Streak
 

Entry 5

GEISHA IdCdxA.Kumar.2003Data SourcePublication
Complete cDNA Template Probeshow
GCTGCGTGACACCCAGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGG
AGAAGATGTATGTAGGCTATCTTTTGGATAAGGACACCAACATGTATCCCAGTCCCGTCCGGCATCCCAGCCTCAACCT
CAACCCCCAGAACTACGTGCCGGGGCCACCCCAGTACTCGGACTTCGCCAGCTACCACCATGTGCCAGGGATTAACAAC
GACCCTCACCATGGGCAGCCCGCAGCCGCCTGGGGCTCACCCTACACCCCTGCCAAGGAGGACTGGCACTCATATGGCA
CCGCTGCCGCCTCCGCCGCCACCAACCCAGGGCAGTTTGGATTTAGCCCCCCGGATTTTAACCCCATGCAGCCCCATGC
GGGCTCTGGACTCCTGCCTCCAGCCATCAGCAGCTCGGTGCCACAGCTGTCCCCTAATGCACAGAGGCGCACCCCGTAC
GAATGGATGAGGCGCAGTATTCCCAGCACCAGCAGCAGCGGCAAGACGAGGACAAAGGACAAGTACCGGGTGGTGTACA
CGGACCACCAACGCCTGGAGCTGGAGAAGGAATTTCACTACAGCCGCTACATCACCATCCGCCGTAAGGCCGAGCTGGC
TGCTGCCCTGGGGCTCACTGAACGGCAGGTGAAAATCTGGTTTCAGAACCGGAGGGCGAAAGAGAGGAAGGTGAATAAA
AAGAAGCTGCAGCAGCAGAGCCAGCCCACCAGCACCACCACGCCAACCCCCCCAGCCGTGGGCACGCCAGGGCCCATGG
GGACCCTCTGCAGTGGCAGTGCCCCAAGCCTTGTCTCCTCATCTCCGCTCACCATCAAGGAGGAGTTCATGCCTTAGCC
CCCTCCACCAGCCATAGACACTGAGAGATAAGCACTACACGGCAGAGCTTGTTGCTGAGCGCCCAAAGACACCACGTCC
TCTGGGGCATGGTGGCTCTGTTGCCTTCCCAAGAGGCTGATGAGCTCTGTCCTACACAAAGCCCATACGTTAGGTAGTG
CTGTTCTCCTGTAGGAAACGTGCGCTGGTCTCCGGTATTGGTAGCCCAAAACCAGTGGGATGAGTCTTTAAGTGGTGCT
GGAGGACCCTTTCTGTGGCACATCAGAATGAGCCGGTGGGATGCTTCCTGCACGGTCTTCCTGGTGATCCAGCTGCCTG
CTGCTTTGGAGCAGCTTTAGTGAGGCTGGACTAGGGGAAAGGCTTGGCTGGACTCGAGGCAGAATAAATCTCAGCTGAG
ATTGTCTGCAGGATCTGCCACACCTGGAGCGAGTTGGACAACAGGAGCTGGGTAGGACCCTCAGCAGTGGGGCTGGAGG
GGGAATGGGGGCTCCTTAAACTGAGACAATGACAGTGAGTGTCCCCCATGTCCCCCAGCCACCATCCCCAGCTCCATCC
CTGCAGCAACTCAGGGCCATCGCGAGACCTGCAGACATCTGTCCCACAGGTGGACCACCCTGCGGAGGTTTTGAGACCA
CCTTCCAGCATGGAGGAACAAGAACAAGGTTTGCAGTTAGGACACTGGACAGCTCTAGGTTGCCCAGAGGGGCCGCTCA
CCTACCCATGGCACTGCAGAACCTGCACAGCTCCATGCTGCACCAGGGCACTGCCAGCTGCCGGGACCATCATGGTGAT
GGGACATGTCCTGGCACAAGATGATGGATAGCTGGCTTCCATAGAGAGGGATGGGTGGATTTGTGCTGTTTTCTCTGAA
ACACAAAAGGCTCTGGGTTTTGCCCACTTTGTACTCCTCCATGTGCTGCACCATTGGTAACCAATGGCTTTTTTTTCCT
GCTGGAAATCCACAGTTAAAATTCCCCTTAATCCTGCTGACTCCTGGGATCTCTACTGGCCCAGCTACCTTACAGCCCA
GTTTTGGATGCCCCAAAGGGCGTGCTGGGACACAGGAGGGTTTGAGGCTCCTGCTTGGGTCTGTGGCTTCCCAAGACCA
AGGTGAGGGTGTAGAGGCTCTGATGGTTCTCTCCTAGCACCATCATGCTGAGCCCCAGCAGGAACAAGAAGTGGAGGTG
TCCCTGTTGCCTGCAGAGCCCCTCACCCATTCCCAGCCCATTCTGGCCCAGAACTCACAGTGTTAGGGGTTTAATACTG
GGATTTAAGCTCCTTGACACCCACTGCACCTACAGCCCCTTAATAGGGTCTGCATCCCCCACCATGGGGACCAGTGACA
CCTCCCTGGGGCCACCACTGCTACTTTGCAGCAAAGGCAGACACCGGTGTTGGCTTGGGACTTCAGCTCAGGGCTTGTG
TACAGAAGGCAGAACGTTTTATTTTCTAGGCTTTGGTCAAAATAAAAGCGAGCAGGAGCCCTGTGA
CitationKumar M, Jordan N, Melton D, Grapin-Botton A. Signals from lateral plate mesoderm instruct endoderm toward a pancreatic fate. Dev Biol. 2003 Jul 1;259(1):109-22.
CopyrightCopyright © 2003 Elsevier Science (USA). All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204676).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-23
stage 23
stage 23
Gut
Small Intestine

Entry 6

GEISHA IdCDX1.Alev.2010Data SourcePublication
Complete cDNA Template Probeshow
ATGTGCTGCACCATTGGTAACCAATGGCTTTTTTTTCCTGCTGGAAATCCACAGTTAAAATTCCCCTTAATCCTGCTGA
CTCCTGGGATCTCTACTGGCCCAGCTACCTTACAGCCCAGTTTTGGATGCCCCAAAGGGCGTGCTGGGACACAGGAGGG
TTTGAGGCTCCTGCTTGGGTCTGTGGCTTCCCAAGACCAAGGTGAGGGTGTAGAGGCTCTGATGGTTCTCTCCTAGCAC
CATCATGCTGAGCCCCAGCAGGAACAAGAAGTGGAGGTGTCCCTGTTGCCTGCAGAGCCCCTCACCCATTCCCAGCCCA
TTCTGGCCCAGAACTCACAGTGTTAGGGGTTTAATACTGGGATTTAAGCTCCTTGACACCCACTGCACCTACAGCCCCT
TAATAGGGTCTGCATCCCCCACCATGGGGACCAGTGACACCTCCCTGGGGCCACCACTGCTACTTTGCAGCAAAGGCAG
ACACCGGTGTTGGCTTGGGACTTCAGCTCAGGGCTTGTGTACA
CitationAlev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
CopyrightPublished by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
CommentsThe probe for CDX1 was amplified by PCR using the following primers: forward (5' to 3'): ATGTGCTGCACCATTGGTAA reverse (3' to 5'): TGTACACAAGCCCTGAGCTG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
Early Mesoderm
Primitive Streak
 

Entry 7

GEISHA IdcdxA.Bel-Vialar.2002Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCTGCGTGACACCCAGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGG
AGAAGATGTATGTAGGCTATCTTTTGGATAAGGACACCAACATGTATCCCAGTCCCGTCCGGCATCCCAGCCTCAACCT
CAACCCCCAGAACTACGTGCCGGGGCCACCCCAGTACTCGGACTTCGCCAGCTACCACCATGTGCCAGGGATTAACAAC
GACCCTCACCATGGGCAGCCCGCAGCCGCCTGGGGCTCACCCTACACCCCTGCCAAGGAGGACTGGCACTCATATGGCA
CCGCTGCCGCCTCCGCCGCCACCAACCCAGGGCAGTTTGGATTTAGCCCCCCGGATTTTAACCCCATGCAGCCCCATGC
GGGCTCTGGACTCCTGCCTCCAGCCATCAGCAGCTCGGTGCCACAGCTGTCCCCTAATGCACAGAGGCGCACCCCGTAC
GAATGGATGAGGCGCAGTATTCCCAGCACCAGCAGCAGCGGCAAGACGAGGACAAAGGACAAGTACCGGGTGGTGTACA
CGGACCACCAACGCCTGGAGCTGGAGAAGGAATTTCACTACAGCCGCTACATCACCATCCGCCGTAAGGCCGAGCTGGC
TGCTGCCCTGGGGCTCACTGAACGGCAGGTGAAAATCTGGTTTCAGAACCGGAGGGCGAAAGAGAGGAAGGTGAATAAA
AAGAAGCTGCAGCAGCAGAGCCAGCCCACCAGCACCACCACGCCAACCCCCCCAGCCGTGGGCACGCCAGGGCCCATGG
GGACCCTCTGCAGTGGCAGTGCCCCAAGCCTTGTCTCCTCATCTCCGCTCACCATCAAGGAGGAGTTCATGCCTTAGCC
CCCTCCACCAGCCATAGACACTGAGAGATAAGCACTACACGGCAGAGCTTGTTGCTGAGCGCCCAAAGACACCACGTCC
TCTGGGGCATGGTGGCTCTGTTGCCTTCCCAAGAGGCTGATGAGCTCTGTCCTACACAAAGCCCATACGTTAGGTAGTG
CTGTTCTCCTGTAGGAAACGTGCGCTGGTCTCCGGTATTGGTAGCCCAAAACCAGTGGGATGAGTCTTTAAGTGGTGCT
GGAGGACCCTTTCTGTGGCACATCAGAATGAGCCGGTGGGATGCTTCCTGCACGGTCTTCCTGGTGATCCAGCTGCCTG
CTGCTTTGGAGCAGCTTTAGTGAGGCTGGACTAGGGGAAAGGCTTGGCTGGACTCGAGGCAGAATAAATCTCAGCTGAG
ATTGTCTGCAGGATCTGCCACACCTGGAGCGAGTTGGACAACAGGAGCTGGGTAGGACCCTCAGCAGTGGGGCTGGAGG
GGGAATGGGGGCTCCTTAAACTGAGACAATGACAGTGAGTGTCCCCCATGTCCCCCAGCCACCATCCCCAGCTCCATCC
CTGCAGCAACTCAGGGCCATCGCGAGACCTGCAGACATCTGTCCCACAGGTGGACCACCCTGCGGAGGTTTTGAGACCA
CCTTCCAGCATGGAGGAACAAGAACAAGGTTTGCAGTTAGGACACTGGACAGCTCTAGGTTGCCCAGAGGGGCCGCTCA
CCTACCCATGGCACTGCAGAACCTGCACAGCTCCATGCTGCACCAGGGCACTGCCAGCTGCCGGGACCATCATGGTGAT
GGGACATGTCCTGGCACAAGATGATGGATAGCTGGCTTCCATAGAGAGGGATGGGTGGATTTGTGCTGTTTTCTCTGAA
ACACAAAAGGCTCTGGGTTTTGCCCACTTTGTACTCCTCCATGTGCTGCACCATTGGTAACCAATGGCTTTTTTTTCCT
GCTGGAAATCCACAGTTAAAATTCCCCTTAATCCTGCTGACTCCTGGGATCTCTACTGGCCCAGCTACCTTACAGCCCA
GTTTTGGATGCCCCAAAGGGCGTGCTGGGACACAGGAGGGTTTGAGGCTCCTGCTTGGGTCTGTGGCTTCCCAAGACCA
AGGTGAGGGTGTAGAGGCTCTGATGGTTCTCTCCTAGCACCATCATGCTGAGCCCCAGCAGGAACAAGAAGTGGAGGTG
TCCCTGTTGCCTGCAGAGCCCCTCACCCATTCCCAGCCCATTCTGGCCCAGAACTCACAGTGTTAGGGGTTTAATACTG
GGATTTAAGCTCCTTGACACCCACTGCACCTACAGCCCCTTAATAGGGTCTGCATCCCCCACCATGGGGACCAGTGACA
CCTCCCTGGGGCCACCACTGCTACTTTGCAGCAAAGGCAGACACCGGTGTTGGCTTGGGACTTCAGCTCAGGGCTTGTG
TACAGAAGGCAGAACGTTTTATTTTCTAGGCTTTGGTCAAAATAAAAGCGAGCAGGAGCCCTGTGA
CitationSophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15.
CopyrightCopyright © The Company of Biologists Limited 2002.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204676.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-9
stage 9
Neural Plate/Tube
Primitive Streak
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.210

Mouse

EmageMGI:88360
EurexpressMGI:88360
MGI GXDMGI:88360

Frog

Xenbase485395

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070615-29, ZDB-GENE-050510-1
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