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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdChEST265h24
 NCBIEnsembl
Gene NameTCF21TCF21
AliasesTCF21, transcription factor 21, Official 
Gene Descriptiontranscription factor 21Transcription factor 21 (Podocyte-expressed 1) (Pod-1) (Epicardin) (Capsulin). [Source:Uniprot/SWISSPROT;Acc:O43680]
Gene Ontologyshow
GO:0001658 ureteric bud branching IEA
GO:0005515 protein binding IEA
GO:0007548 sex differentiation IEA
GO:0009887 organ morphogenesis IEA
NCBI Nucleotide HitXM_419734 show details
scoreevaluealignment lengthdescription
11550.01163PREDICTED: Gallus gallus transcription factor 21 (TCF21), mRNA
Ensembl Genome Map
contig view
CommentsNo specific expression detected at stage 3.
5' Sequenceshow
CGGGGTCCTCTCTGGATCTATATCACGCCTTAGTGCCGGAGGGGGGAGAGAAGGGGAGGAAAGTGCTGCGCCCCTTCTC
TCCTCCACCGCCACCACGTAGGTTTGGGGAGCTCCCCGTCCTCCCCTCCTCCCCCTTTCCCGCCAGCCCTTTGGCATCT
TCCAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCAAGAGGTGGAAATGCTGGAGTGCGATGGCCTGAA
AATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAGGAGGGATCCAATGGCGAGAATGGCTCCCCTCAG
AAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGAAGAGCCCTTTAAATGGTGTGAGCCAGGAAGGAA
AGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGATGAGGGTCCTTAGCAAAGCCTTCTCCAGGCTTAA
GACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTGGACACCTTGAGGCTGGCCTCCAGCTACATCGCA
CACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACATCCATCCAGTCAACCTGACCTGGCCTTTTATGG
TAGCCGGCAAACCCGAGAGTGACCTGAAAGAAGTGGTGAACACAAACCGCTTGTGCGGCCCGACGGCATCCTGAGCCCC
GCGGCCCCGCCAGCACCGACCCCGTGCGGCCGGGGAGGGGGCACGGGCGCGGGCAGGGCCCCGCTTTGCCCCGCTGCTG
CCCCGGGCCCGGGCAGGGCGACGGGAGAGCGCTCCGCCGGCACGGCACGGCGGAGACCGAAGGCAGAGACTCCACCCCG
GGAGAGCCCGACTCTATTTAACTTTATTGAGTGCGTGTGCAGTCGAGTGTCCTGCAACAGCAGCCTTGCTGGTTCAAGC
GCTACTAGAGGAAAGGCAGAGATCAAACAAAACCTACCACGCGTGTATCTTTTGTCTGAGACCTGTGGAATATGTAGAT
GCCTAGAAAAAAAAAAAAAAACTGACTTTGACAGTCATCTCTATGAACTCATTCGCCCTAAAGATATATAGATATATTT
TCTTCAAGCAGGTTTTTGCTCTATTTCTGTGAATAAACCTTCCTTTCCATTGAACACG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 6

Early Mesoderm

Lateral Plate Mesoderm

Splanchnic Mesoderm

heart field

7-12
stage 11

Intermediate Mesoderm

 
13-18
stage 14
stage 15
stage 15
stage 16

Intermediate Mesoderm

Proepicardium

 
19-23
stage 19
stage 20
stage 21
stage 21
stage 23
stage 23

Allantois

Amnion

Epicardium

Gonad

Gut

Head Mesenchyme

Outflow Tract

Proepicardium

Renal

Sinus Venosus

Splanchnic Mesoderm

hand transected

Probe 2

GEISHA IdCapsulin.Dastjerdi.2007
 NCBIEnsembl
Gene NameTCF21TCF21
AliasesTCF21, transcription factor 21, Official 
Gene Descriptiontranscription factor 21Transcription factor 21 (Podocyte-expressed 1) (Pod-1) (Epicardin) (Capsulin). [Source:Uniprot/SWISSPROT;Acc:O43680]
Gene Ontologyshow
GO:0001658 ureteric bud branching IEA
GO:0005515 protein binding IEA
GO:0007548 sex differentiation IEA
GO:0009887 organ morphogenesis IEA
NCBI Nucleotide HitXM_419734 show details
scoreevaluealignment lengthdescription
4900.0490PREDICTED: Gallus gallus transcription factor 21 (TCF21), mRNA
Ensembl Genome Map
contig view
CitationDastjerdi A, Robson L, Walker R, Hadley J, Zhang Z, Rodriguez-Niedenführ M, Ataliotis P, Baldini A, Scambler P, Francis-West P. Tbx1 regulation of myogenic differentiation in the limb and cranial mesoderm. Dev Dyn. 2007 Feb;236(2):353-63.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsAccording to the authors, "A 550-bp capsulin fragment was PCRed using 5CGA TGC CCT GAA AAT GGA TAC TAA 3', and 5' CCG CGG GGC TCA GGA TGC 3' primers."
Complete Sequenceshow
CGATGGCCTGAAAATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAGGAGGGATCCAATGGCGAGAAT
GGCTCCCCTCAGAAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGAAGAGCCCTTTAAATGGTGTGA
GCCAGGAAGGAAAGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGATGAGGGTCCTTAGCAAAGCCTT
CTCCAGGCTTAAGACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTGGACACCTTGAGGCTGGCCTCC
AGCTACATCGCACACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACATCCATCCAGTCAACCTGACCT
GGCCTTTTATGGTAGCCGGCAAACCCGAGAGTGACCTGAAAGAAGTGGTGAACACAAACCGCTTGTGCGGCCCGACGGC
ATCCTGAGCCCCGCGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 11
stage 11
stage 12

Intermediate Mesoderm

Pharyngeal Arches and Clefts

 

Probe 3

GEISHA IdCapsulin.Ishii.2007
 NCBIEnsembl
Gene NameTCF21TCF21
AliasesTCF21, transcription factor 21, Official 
Gene Descriptiontranscription factor 21Transcription factor 21 (Podocyte-expressed 1) (Pod-1) (Epicardin) (Capsulin). [Source:Uniprot/SWISSPROT;Acc:O43680]
Gene Ontologyshow
GO:0001658 ureteric bud branching IEA
GO:0005515 protein binding IEA
GO:0007548 sex differentiation IEA
GO:0009887 organ morphogenesis IEA
NCBI Nucleotide HitXM_419734 show details
scoreevaluealignment lengthdescription
3051e-172305PREDICTED: Gallus gallus transcription factor 21 (TCF21), mRNA
Ensembl Genome Map
contig view
CitationIshii Y, Langberg JD, Hurtado R, Lee S, Mikawa T. Induction of proepicardial marker gene expression by the liver bud. Development. 2007 Oct;134(20):3627-37. Epub 2007 Sep 12.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by T. Mikawa.
CommentsSequence below was obtained from NCBI (BX932800) using the primers given in the publication: chick/quail capsulin (c/qcapsulin) forward primer, 5'-GGGTCCTCTCTGGATCTATATCAC-3' and reverse primer, 5'-GCCATTCTCGCCATTGGAT-3'.
Complete Sequenceshow
GGGTCCTCTCTGGATCTATATCACGCCTTAGTGCCGGAGGGGGGAGAGAAGGGGAGGAAAGTGCTGCGCCCCTTCTCTC
CTCCACCGCCACCACGTAGGTTTGGGGAGCTCCCCGTCCTCCCCTCCTCCCCCTTTCCCGCCAGCCCTTTGGCATCTTC
CAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCAAGAGGTGGAAATGCTGGAGTGCGATGGCCTGAAAA
TGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAGGAGGGATCCAATGGCGAGAATGGC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 14
stage 16
stage 16
stage 16

Intermediate Mesoderm

Proepicardium

 

Probe 4

GEISHA IdCapsulin.vonScheven.2006
 NCBIEnsembl
Gene NameTCF21TCF21
AliasesTCF21, transcription factor 21, Official 
Gene Descriptiontranscription factor 21Transcription factor 21 (Podocyte-expressed 1) (Pod-1) (Epicardin) (Capsulin). [Source:Uniprot/SWISSPROT;Acc:O43680]
Gene Ontologyshow
GO:0001658 ureteric bud branching IEA
GO:0005515 protein binding IEA
GO:0007548 sex differentiation IEA
GO:0009887 organ morphogenesis IEA
NCBI Nucleotide HitXM_419734 show details
scoreevaluealignment lengthdescription
5980.0598PREDICTED: Gallus gallus transcription factor 21 (TCF21), mRNA
Ensembl Genome Map
contig view
Citationvon Scheven G, Bothe I, Ahmed MU, Alvares LE, Dietrich S (2006). Protein and genomic organisation of vertebrate MyoR and Capsulin genes and their expression during avian development. Gene Expr Patterns. Apr;6(4):383-93. Epub 2006 Jan 18.
CopyrightCopyright © 2005 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_419734).
Complete Sequenceshow
AGAGAAGGGGAGGAAAGTGCTGCGCCCCTTCTCTCCTCCACCGCCACCACGTAGGTTTGGGGAGCTCCCCGTCCTCCCC
TCCTCCCCCTTTCCCGCCAGCCCTTTGGCATCTTCCAGACCATGTCCACTGGGTCCCTCAGTGATGTGGAAGATCTGCA
AGAGGTGGAAATGCTGGAGTGCGATGGCCTGAAAATGGATACTAACAAAGAGTTCGGGGCGTCCAACGAGAGCAACGAG
GAGGGATCCAATGGCGAGAATGGCTCCCCTCAGAAAGGGAGAGGGGCCTCGGGAAAGAGGAAAAAGGCTCCCCCCAAGA
AGAGCCCTTTAAATGGTGTGAGCCAGGAAGGAAAGCAGGTCCAGAGAAACGCTGCCAACGCAAGGGAGAGGGCAAGGAT
GAGGGTCCTTAGCAAAGCCTTCTCCAGGCTTAAGACCACCCTGCCCTGGGTGCCCCCAGACACCAAGCTTTCCAAACTG
GACACCTTGAGGCTGGCCTCCAGCTACATCGCACACCTGAGGCAAATCCTGGCCAACGACAAGTACGAAAATGGCTACA
TCCATCCAGTCAACCTGACCTGGCCTTTTATGGTAGCCGGCAAAC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 12
stage 12
stage 12
stage 12

Allantois

Anterior Intestinal Portal

Aorta

Foregut

Heart

Intermediate Mesoderm

Lateral Plate Mesoderm

Pharyngeal Arches and Clefts

Somatic Mesoderm

Somatopleure

Splanchnic Mesoderm

Coelom

13-18
stage 16
stage 16
stage 16
stage 16
stage 18
stage 18

Allantois

Anterior Intestinal Portal

Epicardium

Esophagus

Heart

Lateral Plate Mesoderm

Lung

Nephric Tubules

Pharyngeal Arches and Clefts

Proepicardium

Splanchnic Mesoderm

Tracheae

19-22
stage 20
stage 20
stage 20
stage 21
stage 22
stage 22

Allantois

Epicardium

Gut

Lung

Myocardium

Nephric Tubules

Pharyngeal Arches and Clefts

Proepicardium

Sinus Venosus

Splanchnic Mesoderm

Tail

 
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