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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXA4
homeobox A4

Gene

Official Symbol	HOXA4
Official Full Name	homeobox A4
CGNC ID	49256
also known as	HOX1.4, chox-1.4, homeobox protein Hox-A4\|homeobox protein Hox-1.4, Hox-A4, Homeobox protein Hox-A4, Chox-1.4
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001030346
Polypeptide	NP_001025517
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4243

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3201	ENSG00000197576		MIM:142953
Mouse	15401	ENSMUSG00000000942	All phenotypic alleles (3):Targeted, knock-out(3)	MGI:96176
Xenopus				486675
Zebrafish	58050	ENSDARG00000036231	ZDB-GENE-000823-4	ZFIN:ZDB-GENE-000823-4

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	395307
Ensembl Gene
KEGG	gga:395307

Entry 1

GEISHA Id	ChEST427P4	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TGGAGAAGGAGTTCCACTTCAACCGCTACCTGACCAGGAGGCGACGCATCGAGATCGCGCACACCCTGTGCCTCTCCGA GCGCCAGGTCAAGATCTGGTTCCAGAACCGGCGCATGAAGTGGAAGAAGGACCACAAGCTGCCCAACACCAAGATGCGC TCCTCCAACCAGCCCTCGCTCGGCCAGCAGCAGGCCAAGGCACAGACACAGGGCCACCCCCGCCCGCTCGACGGGGCTG CGCCCAACGCGGCCGCGCTATAAGGGGCTCGTTGTTCTTGTTTTTTTTTTTAATATATAGATCTCTATTTACCTATCTA TGGGGGTTGTGCGGCCGCCCGCGCTGGCGGTTGGCCCTTGGGACCACGCAACTGTGTAAGACAAAGCAGGAGCAGGGGA AGGAAGGACGAGACGTGCCCAGGGATGGGCACACGTTGAAACCAAAACCCGGACGATTGCCTACATTGTATATAGATAA TGGTTCCATGCCCGTCATTTTTACTATTTATGGAAACCCTCTCTTGCCCTCGCTGTAAGAGTGCTGGATGCTGTCACGG

Stage

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Comments (click to highlight)

7-12

stage 10

Primitive Streak
Tail

caudal

13-18

stage 15

stage 18

Spinal Cord
Trunk Mesenchyme

19-21

stage 21

Somatopleure
Somites
Spinal Cord

Entry 2

GEISHA Id	HOXA4.Barak.2012	Data Source	Publication
Complete cDNA Template Probe	show GGCCTCGCCGAGCCCAGAAAAACGACAACGCGAGAAAAATTAGTATTTTTGCACTTCACAAATTAATGACCATGAGTTC GTTTTTGATAAACTCCAACTACATCGAGCCCAAATTCCCTCCCTGCGAGGAGTACACGCAGCACAGCGGCAGCGCCGGC AGCTCCGCCAGCTACCACCCGCACCACCCGCACCCGCACGCCCCACCACCGCCGCCGCCGCCGCCGCCGCCGCACCTGC ACGCCGCGCACCCGGGCCCCGCTCTGCCCGAGTACTTCCCGCGGCCCCGCCGGGAACCCGGCTACCAGGCTCCCGCCGC GCCGCCGGGGCCGCCGGGGCCGCCTCCCGAGGCGCTGTACCCGGCGCAGGCACCCTCCTACCCCCAGGCTCCCTACAGC TACAGCAGCGCCGGCAGCGCCGCCCCGGGCCCCGAGCAGCCGCCCCCGGGCGCCTCTCCGCCGCCGCCGCCGCCGGCCA AGGGCCACCCCGGGCCGGCCCAGCCCCTGCTCCCCGGCCATGCCCTGCAGCGCCGCTGCGAAGCGGCCCCCGCCGCCGG GGCCGGCACCGGGCCGGGCTGCGCGTTGCTGCCCGACAAGAGCCTGCCCGGGCTGAAGGGGAAGGAGCCGGTGGTGTAC CCCTGGATGAAGAAGATCCACGTGAGCACGGTCAACCCCAACTACAGCGGCGGGGAGCCCAAGCGGTCCCGCACCGCCT ACACCCGACAGCAGGTCCTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGACCAGGAGGCGACGCATCGAGAT CGCGCACACCCTGTGCCTCTCCGAGCGCCAGGTCAAGATCTGGTTCCAGAACCGGCGCATGAAGTGGAAGAAGGACCAC AAGCTGCCCAACACCAAGATGCGCTCCTCCAACCAGCCCTCGCTCGGCCAGCAGCAGGCCAAGGCACAGACACAGGGCC ACCCCCGCCCGCTCGACGGGGCTGCGCCCAACGCGGCCGCGCTATAAGGGGCTCGTTGTTCTTGTTTGTTTTTTTTTAA TATATAGATCTCTATTTACCTATCTATTGGGGTTGTGCGGCCGCCCGCGCTGGCGGCTGCGCCCCTTGGCACCACGCAA CTGTGTAAGACAAAGCAGGAGCAGGGAAGGAAGGACGAGAGCTGCCCAGGGAGCGGGCACACGTTGAAACCAAAACCCG GACGATTGCCTACATTGTATATAGATAATGGTTCCATGCCCGTCATTTTTTTTCTATTTATGGAAACCCTCTCTTGCCC TCGCTGTAAGAGTGCTGGATGCTGTCACGGACGAATTCTCCGTACCTATGACGGACCCTTTTTTTTTGTTGTTGTTGTT GTCGTTGTTTTTAAACAGAGAACACTTTTACAAACTAAAAGACGGTTCAAACAAAGCCAGGAGCTCGGGGGGACGCCCG GTCGAGGCGGTGACTCGAGTGGCGTGGGCCGAGCGTGGCCGTGAGGGGCACACACGGACCCACGAGGCACAGAGCGGAC AGTTCACCTCGGGTTAAAAACTCATGGGAAGCGTCCCCTCACGCCGTGTTGGTGTACCGGCCGTAACTTAGCTGGGTTT CGGTGTAGCCCCGCAGTAGCTGTGATATATGAGTTTTTTTCCTCCACATTCCCCATCGCATTTATTTAAAAAGAAAAGA ATAATAATAATAACGCTATTAAAGGCTGTGGCTGTTTTCATATTTGGCACCGTCTAAATCGTTTGGGTCCATGTACAAT TTGTGGATTTTTTGGTGTAATGTATACAGTGCCAGATGCTGGTAATAAAGTTATTCTGTACAAAAAGAATTAAACGCTT CGAAA
Citation	Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001030346.1).