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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PDLIM5
PDZ and LIM domain 5

Gene

Official Symbol	PDLIM5
Official Full Name	PDZ and LIM domain 5
CGNC ID	51807
also known as	PDZ and LIM domain protein 5, PDLIM5
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001031149
Polypeptide	NP_001026320

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	10611	ENSG00000163110		MIM:605904
Mouse	56376	ENSMUSG00000028273	All phenotypic alleles (2):Targeted, other(2)	MGI:1927489
Xenopus	548530, 100101292			854113
Zebrafish	393165, 436927	ENSDARG00000027600, ENSDARG00000038267	ZDB-GENE-040426-908, ZDB-GENE-040718-401	ZFIN:ZDB-GENE-040426-908, ZFIN:ZDB-GENE-040718-401

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	422699
Ensembl Gene	ENSGALG00000012211
KEGG	gga:422699

Entry 1

GEISHA Id	ChEST458h21	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCGGCTCGAGGAGGGACGGAGCTGCTGCCTGGCAGACGCGCCGCGGGTGTCTTCGTCGCTCCGCGCCCCGCAGCGCTGG GCTGGGCATCAAGTCCTTGGCTTGGATCCTTGAATACTGAACACCATGAGCAACTACAGCGTGTCTCTGGTCGGCCCGG CTCCTTGGGGTTTCAGGCTTCAAGGTGGCAAGGATTTCAACATGCCCCTGTCCATCTCTCGGCTTAACGACGGTGGAAA AGCAGCCCGAGCAAACGTGGGGATTGGTGACGTGGTTCTCACCATTGATGGGATAAGTACAGACAGGATGACTCATCTA GAAGCACAAAACAAGATCAAGGCATGTACAGGCAATCTGAACATGACTTTGCAAAGAGTGGCTTCTGCAACAAAACCTG ATATTATTCATGTACCAAAGCCTGCCACGCACAATGCCGCCCCGGGCGGCCATGTCGGCGACAGCACCCAGGAGCTAGC GGAGGGGCTGCGACGAGGATTCAGAGAGAACCAGGTGACAATAAACAGCAAAATGGGAAAATCCCACCCAAACGCCCCC CACGAAAGCACATTGTGGATACCTATACGGAGTTCTATCACACCCCTACTCACAGCGATGCCAGCAAGAAGCGGCTGAT TGAAGATACTGAAGACTGGCATCCC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Area Opaca
Germinal Crescent
Paraxial Mesoderm
Primitive Streak

7-12

stage 9

stage 10

stage 11

stage 12

Atria
Blood Vessels
Head Mesenchyme
Heart Tube
Oral Pharynx
Paraxial Mesoderm
Rhombomeres
Sinus Venosus
Somites
Ventricles
Yolk Sack or Stalk

13-18

stage 14

stage 17

stage 18

Ear/Otic Placcode
Head Mesenchyme
Pharyngeal Arches and Clefts
Sinus Venosus

19-20

stage 19

stage 20

Atria
Sinus Venosus
Somites
Ventricles

Entry 2

GEISHA Id	PDLIM5.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTCTGATAGGCCTGCAGGGTACAGAGGTTTTTACAAAGCAATGAAGAGTAGGTGGCTATGCTAGCAAACAGGAGTGACT TAGAAGAGGCCACTTGAAAGAAAGCGTAGATGGGATACCATTCCTGACATCATGGCGTGTACTACCAGAACACTAGCCA AAACAAAGTGCTAGTTGAGGTGCATTTGACAAGACAGAAATGTCAGATCAGATCTTCAGTATAAGGAAGTGAGAGTTAT ACTCTTCTGTTCACAGCTGAAGTTCTAGGAAGTTTTCAGTGCCTCGGAAAGGAAATCACATTGAATCTACGCATAACAG TGCTTATAACTTGAATGTGATGCTTGGTGTTTAATGAGGGAAACTTCTGAGGACAGAAGGTCCTCAGGTGCAACTGAGG ACATTACTTTTCTCTCAGTACATTCTTTATGATGTAGCTCATAAATATGTATATTGGTGGTGTGCCAGGTAGTGTACTG AAAACTGATTTTCTTGCTCAGCTGTTACGATTTTTATTCGTTTGCTTTTTTCTCTCCTTTCCAGCAGATGCAAGGAATA TATTGTTAAATAATGTAACATTGAGTTAGGCAGTCCAGTATTTCTCAGTTGTTGCAGGGGAAAGTAGACAATACTGCCA TTATGCATTTATGCAAGCCAAGAGATTTTGCCAATCCTGTGGCTTTGTATGAATTTCACTTCCACCACAGAGGGTCAGC AGGAGACCTGTGCACCAGTTAAGTCCCACTTTGTCTTCCCAATTAGGGCTCAATGGTATTGGAGTAGTACGTAAGCTTA TAGGGGGAGGGGTAATGACCCTCTGCACGAGGTGGACTTACTCCG
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.