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SMARCB1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1| Gene | | Official Symbol | SMARCB1 | | Official Full Name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 | | CGNC ID | 4462 | | also known as | MMP11, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1|matrix metallopeptidase 11 (stromelysin 3)|matrix metalloproteinase 11 (stromelysin 3) | | gene type | protein-coding |
| | Genomic Map | | | Sequence Information | | | Gene Expression | | | Orthology | | | Gene Ontology | | Molecular Function | p53 binding, Tat protein binding, transcription coactivator activity | | Biological Process | ATP-dependent chromatin remodeling, blastocyst hatching, cell differentiation, DNA repair, more...mitotic cell cycle phase transition, negative regulation of cell proliferation, nervous system development, nucleosome disassembly, positive regulation by host of viral transcription, positive regulation of sequence-specific DNA binding transcription factor activity, positive regulation of transcription from RNA polymerase II promoter, regulation of transcription from RNA polymerase II promoter, transcription, DNA-templated | | Cellular Component | BAF-type complex, nBAF complex, npBAF complex, nuclear chromosome, nucleolus, nucleus, SWI/SNF complex, XY body |
| | Links to other databases | |
Entry 1| GEISHA Id | ChEST493o2 | Data Source | GEISHA ISH Analysis | | Forward cDNA Template Probe | show AGGCCGCGGCGCTGCCCCTCTCGCTGCGCCCCGCTCCCCTCAGCGCCGCCGGAGCCCCGCCAGGCCGCCGCGATGATGA
TGATGGCGCTGAGCAAAACTTTTGGGCAGAAGCCCGTCAAGTTCCAGCTGGAGGAGGACGGCGAGTTCTATATGATCGG
CTCCGAGGTGGGGAACTACCTGCGTATGTTCCGGGGCTCGCTGTACAAGAGGTATCCCTCACTCTGGAGACGACTAGCC
ACAGTGGAAGAAAGGAAGAAGATAGTGGCATCTTCACATGAAAATCACCGGTCTCACAGTCCCAGAAGATATCATGGAT
ATACAACATTAGCCACCAGTGTGACACTGTTAAAGGCCTCTGAAGTGGAAGAGATCTTGGATGGAAATGATGAGAAATA
CAAGGCGGTGTCTATCAGCACAGAACCTCCCACCTACCTCAGAGAACAGAAGGCAAAGAGGAACAACCAGTGGGTGCCG
ACACTGCCCAACAGCTCTCATCACCTGGATGCAGTGCCATGCTCAACAACAATTAACAGAAATCGCATGGGCAGGGACA
AGAAGAGGACTTTCCCTCTGTGCTTTGATGACCATGACCCAGCAGTCATCCATGAGAACGCATCCCAGCCGGAGGTTCT
GGTTCCAATCAAGCTTGATATGGAAATTGATGGGCAAAAACTCAGAGACGCATTTACATGGTACATGAATGAAAAGCTG
ATGACCCCAGAAATGTTCTCCGAAAT | | Comments | No specific expression detected stages 7-22. Likely ubiquitous. |
no images Entry 2| GEISHA Id | MMP11.UApcr | Data Source | GEISHA ISH Analysis | | Forward cDNA Template Primer | GAAATACAAGGCGGTGTCTATC | | Reverse cDNA Template Primer | ATTAACCCTCACTAAAGGTGGCAAGTGGAATGTGTG | cDNA Template Length | 963 | | Forward cDNA Template Probe | show CCGGAGGGANGTAGACCCTGCCAATCCTAGATCCATCTGGGGAGAGGAGTGGGGACAAAGTCTGATAGGAAGAGCACCA
GTGTCACAAGAGGAAGTTTACCAGGCTGGAGCAGTGTTGGCCAAGCGTCTCATACGCCTTGTATTTCTGTCCTGGTCTC
TGATCTTCTTCTCCATCTCGGCGTCTGTGAGGGTTTCCAGAAGAGGGCACCACTGGTCGGCATCCCCCGTGTTGCGAAT
CGCGATTTCCACAGTCGGCAAAGGGTTCTCACTGAAGGCGTATGTCTTCTGATGCCAGCTCAGCTGTCCCCGGATGCTG
TAGGCAATAGTAGTGACAAACTCCCCACCCAGGCCAAGCTCTGAGCACAGCTTCAAGGCAAACTTCTCTGGTGAATTCT
CCTTCTCTGACATGTCCCATTCAAACTGGTCTACAAGGGAGATGTTCCCTACGTGGATGTTTAGCTTAATAATAACNCG
TTGGTCTGACTGGTCCTCGAGGATGCTGTCAGTTGGGTATGATTCGATCTGTTGTCGGATGGCAGAGGCAATAGCAGGG
ACAAAGGTCAGAGGATTCAAATCCAGGTCATCACAAAGAATCTCGGAGAACATTTCTGGGGTCATCAGCTTTTCATTCA
TGTTCCATGTAAATGCNTCTCTGAGTTTCTGCCCATCAATTTCCATATCAAGCCTGATTGGAACCAGAACCTCCGGCTG
GGATGCGTTCTCATGGATGACTGCTGGGTCATGGTCATCAAAGCACAGAGGGAAAGTCCTCTTCTTGTCCCTGCCCATG
CGATTTCTGTTAATTGTTGTTGAGCATGGCACTGCATCCAGGTGATGAGAGCTGTTGGGCAGTGTCGGCACCCACTGGT
TGTTCCTCTTTGCCTTCTGTTCTCTGAGGTAGGTGGGANGTTCTGTGCTGATANACACCGCCTTNGNAATTCAAA |
| | Data from NCBI Unigene EST Profile
Unigene ID: Gga.48681 |
MouseFrogFruit FlyZebra FinchZebrafish |
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