GEISHA - A Chicken Embryo Gene Expression Database
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FOXO3
forkhead box O3

Gene
Official SymbolFOXO3
Official Full Nameforkhead box O3
CGNC ID11389
also known asforkhead box protein O3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNAXM_001234495
PolypeptideXP_001234496
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2309ENSG00000118689MIM:602681
Mouse56484ENSMUSG00000048756All phenotypic alleles (7):Chemically induced(1) Targeted, knock-out(3) Targeted, other(1) Gene trapped(2) MGI:1890081
Xenopus100125025, 444992945071
Zebrafish30296, 494532ENSDARG00000042904, ENSDARG00000023058ZDB-GENE-990708-6, ZDB-GENE-050116-1ZFIN:ZDB-GENE-990708-6, ZFIN:ZDB-GENE-050116-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene421769
Ensembl Gene
KEGGgga:421769

Entry 1

GEISHA IdChEST558l10Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGTCGCCCATGCAGACTATTCAGGAGAACAAGCAGGCTACCTTCTCTTCCATTTCTCATTACAACAACCAGACGCTGCA
GGATCTGCTCGCCTCGGATGCACTTAGTCACAGCGATGTCATGATGACACAGTCTGACCCGCTTATGTCCCAGGCCAGC
ACAGCTGTGTCCGCCCAGAACTCCCGCAGGAATATAATGCTCCGCAATGACCCCATGATGTCGTTTGCTGCACAGTCCA
GTCAGGGCGGCCTGGTCAATCAGAGCCTGCCCCATCACCAGCACCAGTCTCACAGCTCTCCTCTTAGCGGCAGCCGTGC
CTTGTCCAATTCCATCAGTAACATAGGCTTGAATGACTCCAACAGCTTGGGATCCAAACATCAGCAGTCTCCTGTCAAT
CAGTCTATGCAAACACTTTCTGACCCTCTCTCAGGCTCCTCTTTGTATTCCTCTAGCATGAACCTTCCGGTCATGGGAC
ACGAGAAATTCCCAAGTGACTTAGACCTGGATATTTTCAATGGGAGCTTGGAGTGTGACATGGAGTCCATCATCCGCAG
TGAACTCATGGATGCAGATGGGCTGGATTTTAACTTTGATTCCCTCATCTCAGCACAGAACGTTGTCAGTCTGAATGTG
GGGAACTTCACTGGTGCTAAACAGGCTTCATCACAGAGTTGGGTACCAGGCTGAAGGATCTTTGAGGACAGGGAAAATG
GGCAAACAGGCCCTCAAACTGACACGAGATGTAGAGAGAGAACCCTTTGCCAAATCTGCTGTCAGCAAGTGGACAGTGA
TACTGTTTACAGCTTATGACGTTTGTGAACCCTGCATTATTTTCCTAACAAAGCAGACTGTTAAAAGGCCCCTTATCTG
AGTGAAGATTCCTCCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
Paraxial Mesoderm
 
19-20
stage 20
Eye
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Widespread Expression
 

Entry 2

GEISHA IdFOXO3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-TCGTAAAGATGCACCTCTTG-3’
Reverse cDNA Template Primer5’-ATTAACCCTCACTAAAGGCAAATCCTCAGGGTATGGTG-3’cDNA Template Length476
Complete cDNA Template Probeshow
TCGTAAAGATGCACCTCTTGGTTTCATCCCGCAGTTATGACTGTGTAAAGTCTGTGCAGTTGTGGTTGTTGTTGCCCTG
TAGCATATCAACTTTTCCAAGCAGCCAAGGGTTTATCATTCTCGTTTCTAAAAAAAAAAAGGAGACTTTTATTTTCACA
CTCAGTTGGTCTATTTGTCATCATGGGGACTAGGTGATTAAATCCACGGGAGGTAGCTGACACTCGCTGCCCATCTCCA
TATTCAAGAAGGTTGGTTGTTAGCAGACGCGAGCATGCCACAGGTCACCAGGCCTAGGCATCACTTTGCTTATCAGTCC
AACTGCAGATGCTTCTTAACAAAGTCAGTCAAGGGCTTCCCCACAAGCCTGCTGGCACACCCCAAAATGTGAGTGCACA
CCTGTCCTCTGGTGCTCCTTCCCGAGGCAGCTCTGTGGTTGCTGCCCCAACCTGGGCTTGTCACCATACCCTGAGGATT
TG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Unlabeled
 
13-18
stage 18
Ear/Otic Placode
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Midbrain
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Somites
Ventricles
Wing Mesenchyme
 
19-24
stage 19
stage 20
Allantois
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Widespread Expression
 
25-26
stage 25
stage 25
stage 25
stage 25
stage 26
Aorta
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Mesonephros
Midbrain
Myotome
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Widespread Expression
Wing Mesenchyme
 

Entry 3

GEISHA IdFOXO3.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GTCGCCCATGCAGACTATTCAGGAGAACAAGCAGGCTACCTTCTCTTCCATTTCTCATTACAACAACCAGACGCTGCAG
GATCTGCTCGCCTCGGATGCACTTAGTCACAGCGATGTCATGATGACACAGTCTGACCCGCTTATGTCCCAGGCCAGCA
CAGCTGTGTCCGCCCAGAACTCCCGCAGGAATATAATGCTCCGCAATGACCCCATGATGTCGTTTGCTGCACAGTCCAG
TCAGGGCGGCCTGGTCAATCAGAGCCTGCCCCATCACCAGCACCAGTCTCACAGCTCTCCTCTTAGCGGCAGCCGTGCC
TTGTCCAATTCCATCAGTAACATAGGCTTGAATGACTCCAACAGCTTGGGATCCAAACATCAGCAGTCTCCTGTCAATC
AGTCTATGCAAACACTTTCTGACCCTCTCTCAGGCTCCTCTTTGTATTCCTCTAGCATGAACCTTCCGGTCATGGGACA
CGAGAAATTCCCAAGTGACTTAGACCTGGATATTTTCAATGGGAGCTTGGAGTGTGACATGGAGTCCATCATCCGCAGT
GAACTCATGGATGCAGATGGGCTGGATTCTAACTTTGATTCCCTCATCTCAGCACAGAACGTTGTCCAGTCTGAATGTG
GGGAACTTCACTGGTGCTAAACAGGCTTCATCACAGAGTGGGTACCAGGGCTGAAGGATCTTTGAGGACAGGGAACACA
TGGGGCAAACCAGGCCCTCAAACTGACACGAGATGTAGAGAGAGAACCCTTTGCCAAAATCTGGCTGTCAGCCAAGTGG
ACCGGGATACTGTTTTACACGCTTATGACCGTTGGTGAACCCTGCATTATTTCCCTAACAAAGCAGACTGTTAAACGGG
CCCCTTATCTGAGTGAAGAATCCTCC
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Unlabeled
 
1-3
stage 3
Mesoderm
Primitive Streak
primitive streak / weak in mesoderm
4-6
stage 6
Headfold
Hensen's Node
Neural Plate/Tube
neural plate / head fold / Hensen's node (left side)
7-9
stage 9
Neural Plate/Tube
Somites
anterior neural plate / somites
all
 
  

Mouse

EmageMGI:1890081
MGI GXDMGI:1890081

Frog

Xenbase945071

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990708-6, ZDB-GENE-050116-1
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