home | contact
A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
  Data Class
  Enter Text:
  go
- Gene Family QuickSearch
 
¥ Transcription Factors
¥ Growth Factors
¥ Receptors
¥ MicroRNAs
Documents
- About GEISHA
- Protocols
- Contact Us
Resources
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_
Gene Expression Report

Probe 1

GEISHA IdChEST564A12
 NCBIEnsembl
Gene NameALDH1A2AL1A2_CHICK
AliasesRALDH2, aldehyde dehydrogenase 1A2|retinaldehyde dehydrogenase 2|retinaldehyde-specific dehydrogenase type 2, ALDH1A2, aldehyde dehydrogenase 1 family, member A2, Official 
Gene Descriptionaldehyde dehydrogenase 1 family, member A2Retinal dehydrogenase 2 (EC 1.2.1.36) (RalDH2) (RALDH 2) (RALDH(II)) (Retinaldehyde-specific dehydrogenase type 2) (Aldehyde dehydrogenase family 1 member A2). [Source:Uniprot/SWISSPROT;Acc:O93344]
Gene Ontologyshow
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0008285 negative regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0021915 neural tube development IEA
GO:0030182 neuron differentiation IEA
GO:0030324 lung development IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0034097 response to cytokine stimulus IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0042904 9-cis-retinoic acid biosynthetic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
GO:0048566 embryonic gut development IEA
GO:0055114 oxidation reduction IEA
show
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0008152 metabolic process IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0030182 neuron differentiation IEA
GO:0030326 embryonic limb morphogenesis IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
NCBI Nucleotide HitNM_204995 show details
scoreevaluealignment lengthdescription
7470.0869Gallus gallus aldehyde dehydrogenase 1 family, member A2 (ALDH1A2), mRNA
Ensembl Genome Map
contig view
Complete Sequenceshow
CCCAGTATACAATCCAGCAACAGGAGAGCAGATCTGTGAGATCCAGGAAGCAGACAAGGTTGACACGGACAAGGCAGTG
AGAGCAGCTCGCCTTGCTTTTTCTCTGGGTTCAGTTTGGAGGAGAATGGATGCATCGGAAAGAGGCCAACTTTTGGATA
AACTGGCAGACTTGGTTGAAAGAGACAGGGCAGTTCTTGCTACTATGGAATCACTGAACAGTGGCAAACCATTCCTGCA
AGCCTTCTACGTAGATCTTCAAGGAGTCATAAAAACCCTGAGGTATTACGCTGGTTGGGCAGACAAAATCCATGGAATG
ACCATACCTGTAGATGGAGATTATTTTACGTTTACAAGACATGAACCCATCGGAGTGTGTGGACAGATCATCCCTTGGA
ACTTCCCCCTGCTGATGTTTGCATGGAAGATTGCTCCAGCTCTGTGCTGCGGCAATACAGTAGTTATTAAACCAGCAGA
ACAAACACCACTCAGCGCTCTCTATATGGGAGCCCTCATCAAGGAGGCTGGCTTTCCACCAGGAGTTGTGAATATTTTG
CCAGGATTCGGTCCAATTGTTGGTGCAGCAATAGCATCTCATGTGGGCATTGATAAAATTGCGTTTACTGGATCCACTG
AGGTTGGGAAGCTGATCCAAGAAGCAGCTGGAAGGAGTAACTTGAAGAGAGTTACATTCGGAGCTGGGTGGGGAAAAGG
CCAAAACATCATTTTTGCAGATGCTGATTGGATTATGCTGGTGGAAAAAGCTCACCAGGGGGTCTTCTTCAATTCAAGG
TTCAATGTGGCACTGCAGGCTCAAGGATTTAACGTGGAAAGAATTCAATCTATGAAGGAAGTTGGTCAGAAGAAGTGTG
A
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6

Area Pellucida

 
7-12
stage 12

Lateral Plate Mesoderm

Somites

 
13-18
stage 15
stage 16
stage 17
stage 17

Epicardium

Lateral Plate Mesoderm

Limb Buds

Proepicardium

Somatopleure

Somites

Wing Mesenchyme

 
19-24
stage 20
stage 20
stage 20
stage 20
stage 21
stage 22
stage 22
stage 24
stage 24

Epicardium

Face Mesenchyme

Forebrain

Hindbrain

Lateral Plate Mesoderm

Midbrain

Pharyngeal Arches and Clefts

Somites

Wing Mesenchyme

different run with less color rxn

Probe 2

GEISHA IdRaldh2.Bothe.2006
 NCBIEnsembl
Gene NameALDH1A2AL1A2_CHICK
AliasesRALDH2, aldehyde dehydrogenase 1A2|retinaldehyde dehydrogenase 2|retinaldehyde-specific dehydrogenase type 2, ALDH1A2, aldehyde dehydrogenase 1 family, member A2, Official 
Gene Descriptionaldehyde dehydrogenase 1 family, member A2Retinal dehydrogenase 2 (EC 1.2.1.36) (RalDH2) (RALDH 2) (RALDH(II)) (Retinaldehyde-specific dehydrogenase type 2) (Aldehyde dehydrogenase family 1 member A2). [Source:Uniprot/SWISSPROT;Acc:O93344]
Gene Ontologyshow
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0008285 negative regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0021915 neural tube development IEA
GO:0030182 neuron differentiation IEA
GO:0030324 lung development IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0034097 response to cytokine stimulus IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0042904 9-cis-retinoic acid biosynthetic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
GO:0048566 embryonic gut development IEA
GO:0055114 oxidation reduction IEA
show
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0008152 metabolic process IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0030182 neuron differentiation IEA
GO:0030326 embryonic limb morphogenesis IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
NCBI Nucleotide HitNM_204995 show details
scoreevaluealignment lengthdescription
35320.03532Gallus gallus aldehyde dehydrogenase 1 family, member A2 (ALDH1A2), mRNA
Ensembl Genome Map
contig view
CitationBothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
Complete Sequenceshow
GCACATCGGGTCAGAGCGGGGGGCTCGGCTGCTCCGTATCCCCCCCGAGACTATGACTTCCAGTAAAATTGAGATGCCA
GGGGAGGTGAAGGCAGATCCTGCCGCTCTGATGGCATCTCTGCATCTGCTGCCTTCTCCCACTCTCAACCTTGAAATCA
AACACACGAAGATTTTTATCAATAATGAGTGGCAAAATTCTGAAAGCGGGAGAGTATTCCCAGTATACAATCCAGCAAC
AGGAGAGCAGATCTGTGAGATCCAGGAAGCAGACAAGGTTGACACGGACAAGGCAGTGAGAGCAGCTCGCCTTGCTTTT
TCTCTGGGTTCAGTTTGGAGGAGAATGGATGCATCGGAAAGAGGCCAACTTTTGGATAAACTGGCAGACTTGGTTGAAA
GAGACAGGGCAGTTCTTGCTACTATGGAATCACTGAACAGTGGCAAACCATTCCTGCAAGCCTTCTACGTAGATCTTCA
AGGAGTCATAAAAACCCTGAGGTATTACGCTGGTTGGGCAGACAAAATCCATGGAATGACCATACCTGTAGATGGAGAT
TATTTTACGTTTACAAGACATGAACCCATCGGAGTGTGTGGACAGATCATCCCTTGGAACTTCCCCCTGCTGATGTTTG
CATGGAAGATTGCTCCAGCTCTGTGCTGCGGCAATACAGTAGTTATTAAACCAGCAGAACAAACACCACTCAGCGCTCT
CTATATGGGAGCCCTCATCAAGGAGGCTGGCTTTCCACCAGGAGTTGTGAATATTTTGCCAGGATTTGGTCCAATTGTT
GGTGCAGCAATAGCATCTCATGTGGGCATTGATAAAATTGCGTTTACTGGATCCACTGAGGTTGGGAAGCTGATCCAAG
AAGCAGCTGGAAGGAGTAACTTGAAGAGAGTTACACTGGAGCTGGGTGGGAAAAGCCCAAACATCATTTTTGCAGATGC
TGATTTGGATTATGCTGTGGAACAAGCTCACCAGGGGGTCTTCTTCAATCAAGGTCAATGCTGCACTGCAGGCTCAAGG
ATTTACGTGGAAGAATCAATCTATGAAGAGTTTGTTAGAAGAAGTGTAGAACGTGCAAAGAGGAGAGTAGTAGGGAGTC
CTTTTGACCCAACTACAGAACAAGGGCCACAGATTGATAAAAAACAATACAACAAGATCTTGGAACTGATTCAGAGCGG
CATTACTGAAGGAGCAAAACTTGAATGTGGGGGTAAAGGGCTAGGAAGAAAGGGCTTCTTCATTGAACCTACAGTGTTT
TCCAATGTAACAGATGACATGCGGATTGCCAAGGAGGAGATTTTTGGGCCTGTTCAAGAAATACTGAGATTTAAAACCG
TGGATGAAGTCATAGAGAGAGCCAACAATTCTGACTTTGGGCTGGTAGCTGCTGTCTTTACAAATGACATAAACAAGGC
CCTGACAGTCTCTTCAGCAATGCAGGCTGGGACAGTCTGGATAAATTGCTACAACGCCTTAAATGCCCAGAGTCCTTTT
GGAGGATTCAAAATGTCTGGCAATGGTAGAGAGATGGGTGAAAGCGGATTGAGAGAATATTCTGAAGTTAAAACAGTGA
CAATAAAGATCCCTCAGAAGAATTCCTAAAATGATGAAAGACCACATAGTGCAGAAGAGCACATCGTGCCACCCTCTCA
TTCTTTATGGAGACCAGCACTCAGGAATAAAAAGTGTTACACAATATGTATTTAAGAAAATAAGTTGCAGCATATGTAC
TGGGCACATAATTGCGTAACTAATGCAAACCAACTCTGCATGTTTTCATAAAACTCTCTTGAGAATCATTACATCTTTA
TAAAACAAATCTTAACAAGATGAAGTTGCTGTTGGGCATCAGTAACAGTTCTAGCTATAAAACCGCTGAACGCAAATGC
ATGCACACACACATTTATCTCTTCTTCAAATAAAATAAGTCACTGCTTTCAAGTTGCCTTCTCAAATAGACCTGCCTTC
TTCTAACATTCTTATTTCACACAGGGCTTTACAAAGCAGATTTGCCCGAAATGCTAGGATTGAACGTTAATCAAGTATC
ATGGATGTTCTTAAGAAAGGAAAGACTGAATTGTAACCAGACGAAAAATTCTAGATAGGCAACTTTCCAATGAGCACGT
TCACGTAAAGAGGTTAAACGAGGGAACTACAGTGTTATATGGACAACAAAACACTCTTACCAGTGAGATTTAACCCGCA
GTGTTTTGGTTTTCAAACCTTATTTCAACAATTATTTTATGGCTTGCTACAAGCAGAAATCACGGAATCATAGAATCAC
AAGGTTGGAAAGGACCTACAAGAACATCCTGTCCAACCGTCCTCCCATTACCCTTGCTACCACAAATCCTCCCTCACCT
ACAGGGACTCAAAAGGTTTTACCTGCTTGATAAAAAAGATGGCCAGACAGGGTGAGAGGGTGCTGAGAACAGGAACAGC
TCCCAAGGCTGCACAGAGCATTTTTCAGCTTTCACTGCCTGCCTAGTTGTGTTGTTGTTGTTGTCACTGTTTCAGCTTT
TTTTTCCTTCTTTTCTAAACAAGTATTTGCACACGTCTCCATTTGTTTGTCTGCTAGTAAAGTGCTTGTGATTACACTG
GGAATCATTCAGTACTCATTGCCACAGGAAGAACCCAGCAAAGAAGTCAGTTTAATTTTACTATCTTATGCAATCAGAG
CTTGCCATCTGCACTCTACTTGTGAGCCTTAGGTAGCTTACTGGCTGCTATTGTACTTTTCAAAGACATCTGGCTTTTG
TTCAGCCCAAGATAAAATTATGAACAAGTTCTCTTAAAAGTGAGATGTTTAAGACCTGCCACGCTATTTTCTGCTGCCT
ATAGAATCTCTTCCAACTTGCAATTAATTAACAAACTGAATATTATCTCCTTCTTCCTTCCAGCTGAAGAACTCCCCAA
CTTTTTTTAATGGTTTTCTTTATGTTTTAACTTAGAATTAAGACAATGTATTTTAAAAGGGTGATAATCTGCAGATAAG
TTCTTGTGGAATTTAAGGACAAAATGATGGCTCAGGGTAGGAGTTTCCCTTAGCTGCAGTCTGTACTTCAGCCTGTTGA
AAACTCCAGCCCTGAACTCAGCAAGTCATCACTTCTGCACATTGCTTTTCTTTGTTCTCTGAACAGTTCCTCTTAGATT
TGAAGTTGTGTGTGTCCTTAAATATACTGCTGGACCAGCAAGAGTATCCAGCACTTTGTAGTGTTGTAGCCTCGATATT
TTGTATTTCTAACTCATGTCAATCTGTGTATGTGTTTTTAAAGCAATATATATATACATGATATTATTCAGAAATGACA
GTGCATCCACAGACATGATATTATTCAGAAATGACAGTGCATCCACAGACATGAAAATGAATAAAATATTCCTGAGTTG
TTAAATGCAAATGTCATGTACTTGTACTGTAGCGTATGTCAGAGTTAAGAGTACAGCAAGTAAGAAATTAGTTCTCTTT
AAACTGCAATATAAAATGTGGCAAAGGAGATTTTATTTCCTTTTGCCTATCTACTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5

Mesoderm

Primitive Streak

 
7-10
stage 7
stage 8
stage 10

Anterior Intestinal Portal

Paraxial Mesoderm

Primitive Streak

Somites

 

Probe 3

GEISHA IdRaldh2.Cui.2003
 NCBIEnsembl
Gene Name AL1A2_CHICK
Gene Description Retinal dehydrogenase 2 (EC 1.2.1.36) (RalDH2) (RALDH 2) (RALDH(II)) (Retinaldehyde-specific dehydrogenase type 2) (Aldehyde dehydrogenase family 1 member A2). [Source:Uniprot/SWISSPROT;Acc:O93344]
Gene Ontologyshow
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0008152 metabolic process IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0030182 neuron differentiation IEA
GO:0030326 embryonic limb morphogenesis IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
Ensembl Genome Map
contig view
CitationCui, J, Michaille, JJ, Jiang, W, Zile, MH. Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. Dev Biol. 2003 Aug 15;260(2):496-511.
Copyright"Reprinted from Developmental Biology, 260, Cui, J, Michaille, JJ, Jiang, W, Zile, MH, Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. 496-511, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204995.1)
Complete Sequenceshow
GCACATCGGGTCAGAGCGGGGGGCTCGGCTGCTCCGTATCCCCCCCGAGACTATGACTTCCAGTAAAATTGAGATGCCA
GGGGAGGTGAAGGCAGATCCTGCCGCTCTGATGGCATCTCTGCATCTGCTGCCTTCTCCCACTCTCAACCTTGAAATCA
AACACACGAAGATTTTTATCAATAATGAGTGGCAAAATTCTGAAAGCGGGAGAGTATTCCCAGTATACAATCCAGCAAC
AGGAGAGCAGATCTGTGAGATCCAGGAAGCAGACAAGGTTGACACGGACAAGGCAGTGAGAGCAGCTCGCCTTGCTTTT
TCTCTGGGTTCAGTTTGGAGGAGAATGGATGCATCGGAAAGAGGCCAACTTTTGGATAAACTGGCAGACTTGGTTGAAA
GAGACAGGGCAGTTCTTGCTACTATGGAATCACTGAACAGTGGCAAACCATTCCTGCAAGCCTTCTACGTAGATCTTCA
AGGAGTCATAAAAACCCTGAGGTATTACGCTGGTTGGGCAGACAAAATCCATGGAATGACCATACCTGTAGATGGAGAT
TATTTTACGTTTACAAGACATGAACCCATCGGAGTGTGTGGACAGATCATCCCTTGGAACTTCCCCCTGCTGATGTTTG
CATGGAAGATTGCTCCAGCTCTGTGCTGCGGCAATACAGTAGTTATTAAACCAGCAGAACAAACACCACTCAGCGCTCT
CTATATGGGAGCCCTCATCAAGGAGGCTGGCTTTCCACCAGGAGTTGTGAATATTTTGCCAGGATTTGGTCCAATTGTT
GGTGCAGCAATAGCATCTCATGTGGGCATTGATAAAATTGCGTTTACTGGATCCACTGAGGTTGGGAAGCTGATCCAAG
AAGCAGCTGGAAGGAGTAACTTGAAGAGAGTTACACTGGAGCTGGGTGGGAAAAGCCCAAACATCATTTTTGCAGATGC
TGATTTGGATTATGCTGTGGAACAAGCTCACCAGGGGGTCTTCTTCAATCAAGGTCAATGCTGCACTGCAGGCTCAAGG
ATTTACGTGGAAGAATCAATCTATGAAGAGTTTGTTAGAAGAAGTGTAGAACGTGCAAAGAGGAGAGTAGTAGGGAGTC
CTTTTGACCCAACTACAGAACAAGGGCCACAGATTGATAAAAAACAATACAACAAGATCTTGGAACTGATTCAGAGCGG
CATTACTGAAGGAGCAAAACTTGAATGTGGGGGTAAAGGGCTAGGAAGAAAGGGCTTCTTCATTGAACCTACAGTGTTT
TCCAATGTAACAGATGACATGCGGATTGCCAAGGAGGAGATTTTTGGGCCTGTTCAAGAAATACTGAGATTTAAAACCG
TGGATGAAGTCATAGAGAGAGCCAACAATTCTGACTTTGGGCTGGTAGCTGCTGTCTTTACAAATGACATAAACAAGGC
CCTGACAGTCTCTTCAGCAATGCAGGCTGGGACAGTCTGGATAAATTGCTACAACGCCTTAAATGCCCAGAGTCCTTTT
GGAGGATTCAAAATGTCTGGCAATGGTAGAGAGATGGGTGAAAGCGGATTGAGAGAATATTCTGAAGTTAAAACAGTGA
CAATAAAGATCCCTCAGAAGAATTCCTAAAATGATGAAAGACCACATAGTGCAGAAGAGCACATCGTGCCACCCTCTCA
TTCTTTATGGAGACCAGCACTCAGGAATAAAAAGTGTTACACAATATGTATTTAAGAAAATAAGTTGCAGCATATGTAC
TGGGCACATAATTGCGTAACTAATGCAAACCAACTCTGCATGTTTTCATAAAACTCTCTTGAGAATCATTACATCTTTA
TAAAACAAATCTTAACAAGATGAAGTTGCTGTTGGGCATCAGTAACAGTTCTAGCTATAAAACCGCTGAACGCAAATGC
ATGCACACACACATTTATCTCTTCTTCAAATAAAATAAGTCACTGCTTTCAAGTTGCCTTCTCAAATAGACCTGCCTTC
TTCTAACATTCTTATTTCACACAGGGCTTTACAAAGCAGATTTGCCCGAAATGCTAGGATTGAACGTTAATCAAGTATC
ATGGATGTTCTTAAGAAAGGAAAGACTGAATTGTAACCAGACGAAAAATTCTAGATAGGCAACTTTCCAATGAGCACGT
TCACGTAAAGAGGTTAAACGAGGGAACTACAGTGTTATATGGACAACAAAACACTCTTACCAGTGAGATTTAACCCGCA
GTGTTTTGGTTTTCAAACCTTATTTCAACAATTATTTTATGGCTTGCTACAAGCAGAAATCACGGAATCATAGAATCAC
AAGGTTGGAAAGGACCTACAAGAACATCCTGTCCAACCGTCCTCCCATTACCCTTGCTACCACAAATCCTCCCTCACCT
ACAGGGACTCAAAAGGTTTTACCTGCTTGATAAAAAAGATGGCCAGACAGGGTGAGAGGGTGCTGAGAACAGGAACAGC
TCCCAAGGCTGCACAGAGCATTTTTCAGCTTTCACTGCCTGCCTAGTTGTGTTGTTGTTGTTGTCACTGTTTCAGCTTT
TTTTTCCTTCTTTTCTAAACAAGTATTTGCACACGTCTCCATTTGTTTGTCTGCTAGTAAAGTGCTTGTGATTACACTG
GGAATCATTCAGTACTCATTGCCACAGGAAGAACCCAGCAAAGAAGTCAGTTTAATTTTACTATCTTATGCAATCAGAG
CTTGCCATCTGCACTCTACTTGTGAGCCTTAGGTAGCTTACTGGCTGCTATTGTACTTTTCAAAGACATCTGGCTTTTG
TTCAGCCCAAGATAAAATTATGAACAAGTTCTCTTAAAAGTGAGATGTTTAAGACCTGCCACGCTATTTTCTGCTGCCT
ATAGAATCTCTTCCAACTTGCAATTAATTAACAAACTGAATATTATCTCCTTCTTCCTTCCAGCTGAAGAACTCCCCAA
CTTTTTTTAATGGTTTTCTTTATGTTTTAACTTAGAATTAAGACAATGTATTTTAAAAGGGTGATAATCTGCAGATAAG
TTCTTGTGGAATTTAAGGACAAAATGATGGCTCAGGGTAGGAGTTTCCCTTAGCTGCAGTCTGTACTTCAGCCTGTTGA
AAACTCCAGCCCTGAACTCAGCAAGTCATCACTTCTGCACATTGCTTTTCTTTGTTCTCTGAACAGTTCCTCTTAGATT
TGAAGTTGTGTGTGTCCTTAAATATACTGCTGGACCAGCAAGAGTATCCAGCACTTTGTAGTGTTGTAGCCTCGATATT
TTGTATTTCTAACTCATGTCAATCTGTGTATGTGTTTTTAAAGCAATATATATATACATGATATTATTCAGAAATGACA
GTGCATCCACAGACATGATATTATTCAGAAATGACAGTGCATCCACAGACATGAAAATGAATAAAATATTCCTGAGTTG
TTAAATGCAAATGTCATGTACTTGTACTGTAGCGTATGTCAGAGTTAAGAGTACAGCAAGTAAGAAATTAGTTCTCTTT
AAACTGCAATATAAAATGTGGCAAAGGAGATTTTATTTCCTTTTGCCTATCTACTTAAAAAAAAAAAAAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 7
stage 8
stage 8
stage 9
stage 10

Headfold

Heart Tube

Somatic Mesoderm

Somites

Splanchnic Mesoderm

cardiac mesoderm

Probe 4

GEISHA IdRaldh2.Reijntjes.2004
 NCBIEnsembl
Gene NameALDH1A2AL1A2_CHICK
AliasesRALDH2, aldehyde dehydrogenase 1A2|retinaldehyde dehydrogenase 2|retinaldehyde-specific dehydrogenase type 2, ALDH1A2, aldehyde dehydrogenase 1 family, member A2, Official 
Gene Descriptionaldehyde dehydrogenase 1 family, member A2Retinal dehydrogenase 2 (EC 1.2.1.36) (RalDH2) (RALDH 2) (RALDH(II)) (Retinaldehyde-specific dehydrogenase type 2) (Aldehyde dehydrogenase family 1 member A2). [Source:Uniprot/SWISSPROT;Acc:O93344]
Gene Ontologyshow
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0008285 negative regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0021915 neural tube development IEA
GO:0030182 neuron differentiation IEA
GO:0030324 lung development IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0034097 response to cytokine stimulus IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0042904 9-cis-retinoic acid biosynthetic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
GO:0048566 embryonic gut development IEA
GO:0055114 oxidation reduction IEA
show
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0008152 metabolic process IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0030182 neuron differentiation IEA
GO:0030326 embryonic limb morphogenesis IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
NCBI Nucleotide HitNM_204995 show details
scoreevaluealignment lengthdescription
35320.03532Gallus gallus aldehyde dehydrogenase 1 family, member A2 (ALDH1A2), mRNA
Ensembl Genome Map
contig view
CitationReijntjes S, Gale E, Maden M. Generating gradients of retinoic acid in the chick embryo: Cyp26C1 expression and a comparative analysis of the Cyp26 enzymes. Dev Dyn. 2004 Jul;230(3):509-17.
CopyrightWiley-Liss, Inc. 2004
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from GenBank (acc # NM_204995).
Complete Sequenceshow
GCACATCGGGTCAGAGCGGGGGGCTCGGCTGCTCCGTATCCCCCCCGAGACTATGACTTCCAGTAAAATTGAGATGCCA
GGGGAGGTGAAGGCAGATCCTGCCGCTCTGATGGCATCTCTGCATCTGCTGCCTTCTCCCACTCTCAACCTTGAAATCA
AACACACGAAGATTTTTATCAATAATGAGTGGCAAAATTCTGAAAGCGGGAGAGTATTCCCAGTATACAATCCAGCAAC
AGGAGAGCAGATCTGTGAGATCCAGGAAGCAGACAAGGTTGACACGGACAAGGCAGTGAGAGCAGCTCGCCTTGCTTTT
TCTCTGGGTTCAGTTTGGAGGAGAATGGATGCATCGGAAAGAGGCCAACTTTTGGATAAACTGGCAGACTTGGTTGAAA
GAGACAGGGCAGTTCTTGCTACTATGGAATCACTGAACAGTGGCAAACCATTCCTGCAAGCCTTCTACGTAGATCTTCA
AGGAGTCATAAAAACCCTGAGGTATTACGCTGGTTGGGCAGACAAAATCCATGGAATGACCATACCTGTAGATGGAGAT
TATTTTACGTTTACAAGACATGAACCCATCGGAGTGTGTGGACAGATCATCCCTTGGAACTTCCCCCTGCTGATGTTTG
CATGGAAGATTGCTCCAGCTCTGTGCTGCGGCAATACAGTAGTTATTAAACCAGCAGAACAAACACCACTCAGCGCTCT
CTATATGGGAGCCCTCATCAAGGAGGCTGGCTTTCCACCAGGAGTTGTGAATATTTTGCCAGGATTTGGTCCAATTGTT
GGTGCAGCAATAGCATCTCATGTGGGCATTGATAAAATTGCGTTTACTGGATCCACTGAGGTTGGGAAGCTGATCCAAG
AAGCAGCTGGAAGGAGTAACTTGAAGAGAGTTACACTGGAGCTGGGTGGGAAAAGCCCAAACATCATTTTTGCAGATGC
TGATTTGGATTATGCTGTGGAACAAGCTCACCAGGGGGTCTTCTTCAATCAAGGTCAATGCTGCACTGCAGGCTCAAGG
ATTTACGTGGAAGAATCAATCTATGAAGAGTTTGTTAGAAGAAGTGTAGAACGTGCAAAGAGGAGAGTAGTAGGGAGTC
CTTTTGACCCAACTACAGAACAAGGGCCACAGATTGATAAAAAACAATACAACAAGATCTTGGAACTGATTCAGAGCGG
CATTACTGAAGGAGCAAAACTTGAATGTGGGGGTAAAGGGCTAGGAAGAAAGGGCTTCTTCATTGAACCTACAGTGTTT
TCCAATGTAACAGATGACATGCGGATTGCCAAGGAGGAGATTTTTGGGCCTGTTCAAGAAATACTGAGATTTAAAACCG
TGGATGAAGTCATAGAGAGAGCCAACAATTCTGACTTTGGGCTGGTAGCTGCTGTCTTTACAAATGACATAAACAAGGC
CCTGACAGTCTCTTCAGCAATGCAGGCTGGGACAGTCTGGATAAATTGCTACAACGCCTTAAATGCCCAGAGTCCTTTT
GGAGGATTCAAAATGTCTGGCAATGGTAGAGAGATGGGTGAAAGCGGATTGAGAGAATATTCTGAAGTTAAAACAGTGA
CAATAAAGATCCCTCAGAAGAATTCCTAAAATGATGAAAGACCACATAGTGCAGAAGAGCACATCGTGCCACCCTCTCA
TTCTTTATGGAGACCAGCACTCAGGAATAAAAAGTGTTACACAATATGTATTTAAGAAAATAAGTTGCAGCATATGTAC
TGGGCACATAATTGCGTAACTAATGCAAACCAACTCTGCATGTTTTCATAAAACTCTCTTGAGAATCATTACATCTTTA
TAAAACAAATCTTAACAAGATGAAGTTGCTGTTGGGCATCAGTAACAGTTCTAGCTATAAAACCGCTGAACGCAAATGC
ATGCACACACACATTTATCTCTTCTTCAAATAAAATAAGTCACTGCTTTCAAGTTGCCTTCTCAAATAGACCTGCCTTC
TTCTAACATTCTTATTTCACACAGGGCTTTACAAAGCAGATTTGCCCGAAATGCTAGGATTGAACGTTAATCAAGTATC
ATGGATGTTCTTAAGAAAGGAAAGACTGAATTGTAACCAGACGAAAAATTCTAGATAGGCAACTTTCCAATGAGCACGT
TCACGTAAAGAGGTTAAACGAGGGAACTACAGTGTTATATGGACAACAAAACACTCTTACCAGTGAGATTTAACCCGCA
GTGTTTTGGTTTTCAAACCTTATTTCAACAATTATTTTATGGCTTGCTACAAGCAGAAATCACGGAATCATAGAATCAC
AAGGTTGGAAAGGACCTACAAGAACATCCTGTCCAACCGTCCTCCCATTACCCTTGCTACCACAAATCCTCCCTCACCT
ACAGGGACTCAAAAGGTTTTACCTGCTTGATAAAAAAGATGGCCAGACAGGGTGAGAGGGTGCTGAGAACAGGAACAGC
TCCCAAGGCTGCACAGAGCATTTTTCAGCTTTCACTGCCTGCCTAGTTGTGTTGTTGTTGTTGTCACTGTTTCAGCTTT
TTTTTCCTTCTTTTCTAAACAAGTATTTGCACACGTCTCCATTTGTTTGTCTGCTAGTAAAGTGCTTGTGATTACACTG
GGAATCATTCAGTACTCATTGCCACAGGAAGAACCCAGCAAAGAAGTCAGTTTAATTTTACTATCTTATGCAATCAGAG
CTTGCCATCTGCACTCTACTTGTGAGCCTTAGGTAGCTTACTGGCTGCTATTGTACTTTTCAAAGACATCTGGCTTTTG
TTCAGCCCAAGATAAAATTATGAACAAGTTCTCTTAAAAGTGAGATGTTTAAGACCTGCCACGCTATTTTCTGCTGCCT
ATAGAATCTCTTCCAACTTGCAATTAATTAACAAACTGAATATTATCTCCTTCTTCCTTCCAGCTGAAGAACTCCCCAA
CTTTTTTTAATGGTTTTCTTTATGTTTTAACTTAGAATTAAGACAATGTATTTTAAAAGGGTGATAATCTGCAGATAAG
TTCTTGTGGAATTTAAGGACAAAATGATGGCTCAGGGTAGGAGTTTCCCTTAGCTGCAGTCTGTACTTCAGCCTGTTGA
AAACTCCAGCCCTGAACTCAGCAAGTCATCACTTCTGCACATTGCTTTTCTTTGTTCTCTGAACAGTTCCTCTTAGATT
TGAAGTTGTGTGTGTCCTTAAATATACTGCTGGACCAGCAAGAGTATCCAGCACTTTGTAGTGTTGTAGCCTCGATATT
TTGTATTTCTAACTCATGTCAATCTGTGTATGTGTTTTTAAAGCAATATATATATACATGATATTATTCAGAAATGACA
GTGCATCCACAGACATGATATTATTCAGAAATGACAGTGCATCCACAGACATGAAAATGAATAAAATATTCCTGAGTTG
TTAAATGCAAATGTCATGTACTTGTACTGTAGCGTATGTCAGAGTTAAGAGTACAGCAAGTAAGAAATTAGTTCTCTTT
AAACTGCAATATAAAATGTGGCAAAGGAGATTTTATTTCCTTTTGCCTATCTACTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
stage 6

Mesoderm, early

Cyp26C1 (turquoise) anterior mesoderm

Raldh2 (purple) posterior mesoderm

posterior mesodermal Raldh2 expression (purple)

Probe 5

GEISHA IdY11
 NCBIEnsembl
Gene NameALDH1A2AL1A2_CHICK
AliasesRALDH2, aldehyde dehydrogenase 1A2|retinaldehyde dehydrogenase 2|retinaldehyde-specific dehydrogenase type 2, ALDH1A2, aldehyde dehydrogenase 1 family, member A2, Official 
Gene Descriptionaldehyde dehydrogenase 1 family, member A2Retinal dehydrogenase 2 (EC 1.2.1.36) (RalDH2) (RALDH 2) (RALDH(II)) (Retinaldehyde-specific dehydrogenase type 2) (Aldehyde dehydrogenase family 1 member A2). [Source:Uniprot/SWISSPROT;Acc:O93344]
Gene Ontologyshow
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0005634 nucleus IEA
GO:0005737 cytoplasm IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0008285 negative regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0021915 neural tube development IEA
GO:0030182 neuron differentiation IEA
GO:0030324 lung development IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0034097 response to cytokine stimulus IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0042904 9-cis-retinoic acid biosynthetic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
GO:0048566 embryonic gut development IEA
GO:0055114 oxidation reduction IEA
show
GO:0001758 retinal dehydrogenase activity IEA
GO:0003007 heart morphogenesis IEA
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEA
GO:0008152 metabolic process IEA
GO:0008284 positive regulation of cell proliferation IEA
GO:0009855 determination of bilateral symmetry IEA
GO:0009952 anterior/posterior pattern formation IEA
GO:0009954 proximal/distal pattern formation IEA
GO:0014032 neural crest cell development IEA
GO:0016331 morphogenesis of embryonic epithelium IEA
GO:0016491 oxidoreductase activity IEA
GO:0030182 neuron differentiation IEA
GO:0030326 embryonic limb morphogenesis IEA
GO:0030900 forebrain development IEA
GO:0030902 hindbrain development IEA
GO:0031016 pancreas development IEA
GO:0035115 embryonic forelimb morphogenesis IEA
GO:0042573 retinoic acid metabolic process IEA
GO:0043010 camera-type eye development IEA
GO:0048384 retinoic acid receptor signaling pathway IEA
NCBI Nucleotide HitNM_204995 show details
scoreevaluealignment lengthdescription
5020.0502Gallus gallus aldehyde dehydrogenase 1 family, member A2 (ALDH1A2), mRNA
Ensembl Genome Map
contig view
5' Sequenceshow
GCAACAGGAGAGCAGATCTGTGAGATCCAGGAAGCAGACAAGGTTGACACGGACAAGGCAGTGAGAGCAGCTCGCCTTG
CTTTTTCTCTGGGTTCAGTTTGGAGGAGAATGGATGCATCGGAAAGAGGCCAACTTTTGGATAAACTGGCAGACTTGGT
TGAAAGAGACAGGGCAGTTCTTGCTACTATGGAATCACTGAACAGTGGCAAACCATTCCTGCAAGCCTTCTACGTAGAT
CTTCAAGGAGTCATAAAAACCCTGAGGTATTACGCTGGTTGGGCAGACAAAATCCATGGAATGACCATACCTGTAGATG
GAGATTATTTTACGTTTACAAGACATGAACCCATCGGAGTGTGTGGACAGATCATCCCTTGGAACTTCCCCCTGCTGAT
GTTTGCATGGAAGATTGCTCCAGCTCTGTGCTGCGGCAATACAGTAGTTATTAAACCAGCAGAACAAACACCACTCAGC
GCTCTCTATATGGGAGCCCTCATCAAG
3' Sequenceshow
GAAGAACTCCCCAACTTTTTTTAATGGTTTTGCTTTATGTTTTAACTTAGAATTAAGACAATGTATTTTAAAAGTGCAG
TGAATAATCTGCAGATAAGTTCTGTGGAATTTAAGGACAAAATGATGGCCTCAGGTGTAGGAGTTTCCCTTAGCTGCAG
TCTGTACTTCAGCCTGTTGAAAACTCCAGCCCTGAACTCAGCAAGTCATCACTTCTGCACATTGCTTTTCTTTGTTCTC
TGAACAGTTCCTCTTAGATTTGAAGTTGTGTGTGTCCTTAAATATACTGCTGGACCAGGACAAGAGTATCCAGCACTTT
GTAGTGTTGTAGCCCTCGATATTTTGTATTTCTAACTCATGTCAATCTGTGTATGTGTTTTTAAAGCAATATATATATA
CATGATATTATTCAGAAATGACAGTGCATCCACAGACATGAAAATGAATCAAAATATTCCTGAGTTGTTAAATGCAAAT
GTCATGTACTTGTACTGTAGCGTATGTCAGAGTTAAGAGTACAGCAAGTAAGAAATTAGTTCTCTTTAAACTGCAATAT
AAAATGTGGCAAAGGAGATTTTATTTCCTTTTGCCTATCTACTTAAAAAAAAAAAAAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4

Paraxial Mesoderm

 
7-12
stage 8
stage 8

Lateral Plate Mesoderm

Paraxial Mesoderm

Somites

 
13-15
stage 15
stage 15

Heart

Lateral Plate Mesoderm

Somites

 
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona