Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

HIPK2
homeodomain interacting protein kinase 2

Gene

Official Symbol	HIPK2
Official Full Name	homeodomain interacting protein kinase 2
CGNC ID	49057
also known as	homeodomain-interacting protein kinase 2, Homeodomain-interacting protein kinase 2 , HIPK2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_416335
Polypeptide	XP_416335
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.12888

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	38070			FBgn0035142
Human	28996	ENSG00000064393		MIM:606868
Mouse	15258	ENSMUSG00000061436	All phenotypic alleles (7):Targeted, knock-out(1) Targeted, other(6)	MGI:1314872
Xenopus	780207, 495265			958493
Zebrafish	557551	ENSDARG00000042518	ZDB-GENE-031125-4	ZFIN:ZDB-GENE-031125-4

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374138
Ensembl Gene	ENSGALG00000012792
KEGG	gga:374138

Entry 1

GEISHA Id	ChEST612c17	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGCATGTGCAAGTTCTCTCTCCTCACACCCTTCAGTCAAGTGCCTTCTGTAGCGTGAAGAAACTGAAAGTAGAGCCGAG TTCGAACTGGGATATGACTGGGTACGGCACACACAGCAAAGTCTACAGCCAGAGCAAGAGCGTACAGTCCTCCCAAGCA GCCGCCGCAGCCGCCGTCAACGCCTCCCTCCAGATCCCCAATCCGAGCATCCCTTACGAACAGACCATCATCTTCCCAG CAAGCACGGGGCACATCGTGGTGACGTCCGCCAACAGCACTTCTGGTGTGGTGGCAGTGTCTGGGCAAACACTGGGCGG ACCACACAACCTGATGCGTCGCAGCACTGTGAGCCTTCTGGACACCTACCAAAAATGTGGACTTAAGCGAAAGAGTGAG GAGATTGAGAACACGAGCAGCGTGCAGATCATCGAAGAGCATCCACCAATGATTCAGAACAATGCCAGTGGGGCCACTG TAGCCACCGCCACCACCTCCACGGCCACCTCCAAAAACAGTGGCTCCAACAGCGAAGGGGATTACCAGCTGGTGCAACA TGAGGTGCTCTGTTCCATGACCAACACGTACGAAGTGTTAGAATTTCTTGGCCGGGGAACCTTCGGACAAGTAGTCAAA TGCTGGAAACGTGGCACTAATGAGATTGTGGCCATCAAGATCCTAAAGAACCATCCTTCCTATGCCCGGCAAGGCCAGA TTGAAGTGAGCATCCTGGCACGGCTGAGCACAGAAAGTGCGGATGACTACAACTTTGTCCGTGCGTATGAGTGCTTCCA GCACAAGAATCACACGTGCTTGGTCTTTGAAATGTTAGAGCAGAACCTCTATGATTTTCCTAAACAAAACAAATTCAGT CCCTTGCCCCTTAGGTACATTCGACCAATTCTCCAGCAAGTAGCAACTGCACTAATGAAGTTGAAAAGCTTGGGACTGA TTCAGGCTGATCTTAAACAGAAAACATCTGTTTGGTAGATCCATCCGAACGCCGTATAGGGTCAAGGTCATAACTTCCG ATCACCTAGCATGTGTCCTAAGCTGGGTGTTCACCTTACTTCAATCAGAAATTTCAGAGCCCCTGAAACTCTCTCGGTT ACCTTTTGGGAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Blood Vessels
Heart Tube
Somites

13-18

stage 16

Blood Vessels
Face Mesenchyme
Heart Tube
Hindbrain
Pharyngeal Arches and Clefts
Somites

19-22

stage 22

Allantois
Amnion
Blood Vessels
Diencephalon
Face Mesenchyme
Hindbrain
Limb Buds
Midbrain
Pharyngeal Arches and Clefts
Pineal Gland
Somatopleure
Somites

Entry 2

GEISHA Id	HIPK2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-CCCTTCCAGCAAGCTCTCAT-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGTCATGCACAGTGACACAGCT-3’	cDNA Template Length	821
Complete cDNA Template Probe	show CCCTTCCAGCAAGCTCTCATCGTCTGCCCACCAGGCTTCCAAGGGTTACAAGCTTCCCCTTCGAAGCACGCTGGGTATT CCGTTCGGATGGAGAATGCTGTTCCCATTGTCACTCAGGCTCCTGGGGCTCAGCCTCTTCAGATCCAGCCAGGACTCCT CGCACAGCAAGCATGGCCCAGCGGCACACAGCAGATCCTGCTCCCTCCTGCCTGGCAGCAGCTGACTGGGGTGGCCACC CACACTTCTGTCCAGCACGCGACCGTCATCCCTGAGTCCATGGCAGGCACCCAGCCACTGGCAGACTGGAGAAACACCC ACGCTCATGGCAGCCACTATAATCCCATCATGCAGCAGCCCGCGCTGTTAGCTAGCCATGTGACTCTCCCCGCAGCCCA GCCCGTCAATGTGGGTGTTGCTCACGTCATGCGCCAGCCGCCCGCCGCCGCCACCTCCACCAGGAAGAGTAAGCAGCAC CAGTCGGCGCCTCGAAATGCATCCACCTACGAAGTTTCGTCCTCTCAGTCCATCAGCTCGCCTCAGCGGTCGAAACGAG TGAAGGAAAACACGCCTCCTCGCTGTGCCATGGTGCACAACAGCCCTGCCTGCAGCACTGCCGTCACCTGCGGCTGGGG TGACATGGCCACCAGCACCACGCGGGAGCGGCAGCGGCAGCCCATAATCATTCCCGACACCCCCAGCCCCGCTGTGAGC GTCATCACTATCAGCAGCGACACCGATGAAGAGGAGGAGCAGAAGCATGCACCCACCAGCACCTTGTCCAAGCAAAGGA AGAACGTCATCAGCTGTGTCACTGTGCATGA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Unlabeled

7-12

stage 8

stage 10

stage 12

Dermomyotome
Extraembryonic
Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Outflow Tract
Pharynx
Sinus Venosus
Somites
Unlabeled
Ventricles
extraembryonic mesoderm

13-18

stage 18

Foregut
Neural Plate/Tube
Notochord
Sclerotome
Sinus Venosus
Somatic Mesoderm
Widespread Expression

19-24

stage 21

stage 23

Forebrain
Foregut
Liver
Lung
Mesonephros
Nephric Tubules
Neural Plate/Tube
Sclerotome
Spinal Ganglia and Nerves
Widespread Expression

stage 25

Liver
Mesonephros
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme

Entry 3

GEISHA Id	HIPK2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TCCAGATCCCCAATCCGAGCATCCCTTACGAACAGACCATCATCTTCCCAGCAAGCACGGGGCACATCGTGGTGACGTC CGCCAACAGCACTTCTGGTGTGGTGGCAGTGTCTGGGCAAACACTGGGCGGACCACACAACCTGATGCGTCGCAGCACT GTGAGCCTTCTGGACACCTACCAAAAATGTGGACTTAAGCGAAAGAGTGAGGAGATTGAGAACACGAGCAGCGTGCAGA TCATCGAAGAGCATCCACCAATGATTCAGAACAATGCCAGTGGGGCCACTGTAGCCACCGCCACCACCTCCACGGCCAC CTCCAAAAACAGTGGCTCCAACAGCGAAGGGGATTACCAGCTGGTGCAACATGAGGTGCTCTGTTCCATGACCAACACG TACGAAGTGTTAGAATTTCTTGGCCGGGGAACCTTCGGACAAGTAGTCAAATGCTGGAAACGTGGCACTAATGAGATTG TGGCCATCAAGATCCTAAAGAACCATCCTTCCTATGCCCGGCAAGGCCAGATTGAAGTGAGCATCCTGGCACGGCTGAG CACAGAAAGTGCGGATGACTACAACTTTGTCCGTGCGTATGAGTGCTTCCAGCACAAGAATCACACGTGCTTGGTCTTT GAAACTGTTAGAGCAGAACCTCTATGATTTCCTAAAACAAAACAAATTCAGTCCCTTGGCCCTTAAGTACATTCGACCA ATTCTCCAGCAGGTAGCAACTGCACTAATGAAGTTTGAAAAGCTTGGGACTGATTCATGCTGATCTTTAACCAGAGAAC ATCATGTTGGTAGATCCATTCCGACAGCCGTATAGGGC
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.