GEISHA - A Chicken Embryo Gene Expression Database
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JMJD6
jumonji domain containing 6

Gene
Official SymbolJMJD6
Official Full Namejumonji domain containing 6
CGNC ID1268
also known asPTDSR, bifunctional arginine demethylase and lysyl-hydroxylase JMJD6|histone arginine demethylase JMJD6|jmjC domain-containing protein 6|jumonji domain-containing protein 6|lysyl-hydroxylase JMJD6|peptide-lysine 5-dioxygenase JMJD6|phosphatidylserine receptor, JmjC domain-containing protein 6 , Jumonji domain-containing protein 6, Protein PTDSR
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001030703
PolypeptideNP_001025874
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.21114
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly42616FBgn0038948
Human23210ENSG00000070495MIM:604914
Mouse107817ENSMUSG00000056962All phenotypic alleles (8):Targeted, knock-out(4) Targeted, other(3) Gene trapped(1) MGI:1858910
Xenopus548957, 380206, 444377966777
Zebrafish266962ENSDARG00000034358ZDB-GENE-040426-17ZFIN:ZDB-GENE-040426-17
Gene Ontology
Molecular Functionhistone demethylase activity (H3-R2 specific), histone demethylase activity (H4-R3 specific), more...metal ion binding, peptidyl-lysine 5-dioxygenase activity, single-stranded RNA binding
Biological Processcell differentiation, histone H3-R2 demethylation, histone H4-R3 demethylation, mRNA processing, more...peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine, regulation of mRNA splicing, via spliceosome, regulation of transcription, DNA-templated, RNA splicing, sprouting angiogenesis, transcription, DNA-templated
Cellular Componentnucleolus, nucleoplasm
Links to other databases
Entrez Gene417355
Ensembl GeneENSGALG00000001802
KEGGgga:417355
GEISHA IdChEST818n22Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGAACTGGTAGCTGAGTTAAAAAGCAGATTGGCAGCCTTAACTGTTGGATCTGCTGGGTTTGATGGAAGCTGGAGCGTT
GGATTTTATTTATTTTAACCCTGTCTCTTTCCTGTTGAAACACTCTCTCCCTTCTTGGAGATTGGGCTGTGTCCTGTTG
TGCAAGGGAACCTGAACTACCTTTGGCAGGAACTCAGCTTCTGAAACTCCTGTGCCAGTCAGTCATGTAGGAGCAGTGT
GTTGGCGAGGAGGGACAGGAGGTTCATTGGTGTACTCCTTACCTGTCCAGACCCCTGAATTTCCTATAGTAGCCAGACA
TAAGTGCACATGGACGTGCCTACTCTGTAGGGCACTGCAGATTATTCCAGGTTACTTCGCTTTGAAGCAAACTTCCCAA
ACTAGCAGTGTTTCTGCCCAGGTTTGCCTTTTATTTCCTGCTCAGTTGAACAGCCCAGGAGTCTGCACAACCCCTGTAG
TCCTCAGAGAGAGCAGGCTGCAGCTGCTGCCTTTGGAAGAATGGGGAGACAGGATTGTGCTGTGTTTGAGGAGGCTGCC
TGCCCTCCTCGGTGCTGCACAGTTGCTTTCTATGGAAGGTGGTGCACGCTGTAGCTTTCTGTTGTGTTTGGCACGCACA
GTTCAGCTTTGCCATCTTAAAGCCTTACAGGATAGGCCAAGCGCTGCTCCACCAGAAGCACGGCAGGGAAGATCCAAAG
TGCAGAGCGTTCTATTCCTTCGTGCCTATGAACTCTTCATGGGGTGAAATCGAGCAGTTTCTGCTTGAAGGCTGCGTTC
ATTGAAGGTCCCTTCCAGGAAGGCAGTGTGTTTGGAATGAGCCACGAACACCGCACCGACTGCTCCGCCAACTCTGTGT
GATGGGAAGCAAAGGTGTGCATTGGCTGCCTGGGAACTGGGACTGCTGGGATCTTCGGTTCTTCCTCTTGCAAGCTTTT
GCCTCAACTGAACTGG
CommentsNo specific expression detected stages 11-19.
no images
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.21114

Mouse

EmageMGI:1858910
EurexpressMGI:1858910
MGI GXDMGI:1858910

Frog

Xenbase966777

Fruit Fly

BDGPFBgn0038948

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-17
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