| |
 | COL9A1
collagen type IX alpha 1 chain | The human orthologue of this gene is associated
with the following human diseases: |
| Gene | | Official Symbol | COL9A1 | | Official Full Name | collagen type IX alpha 1 chain | | CGNC ID | 11923 | | also known as | collagen alpha-1(IX) chain|alpha(IX) collagen-proteoglycan|cartilage alpha(IX) collagen|collagen, type IX, alpha 1, Collagen alpha-1(IX) chain precursor | | gene type | protein-coding |
| | Genomic Map | | | Sequence Information | | | Gene Expression | | | Orthology | | | Gene Ontology | | Molecular Function | | | Biological Process | | | Cellular Component | collagen |
| | Links to other databases | |
Entry 1| GEISHA Id | ChEST859o21 | Data Source | GEISHA ISH Analysis | | Forward cDNA Template Probe | show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACTAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCCGT
TTGAGTCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCGAGAGAAAGTTGTGGTGAGCTCCCAGCCCGGATAAC
CAGAACGTGATTGAGAGAAGTCTTCCTGGTCCACCANGCCCCCCCAGTCAACANGGGCAACAGGAGTTCCTGGCATTGA
TGGCTTGATGGAAAGAGAGGACTAACGGCCCCCCGGTCC | | Comments | No specific expression detected at stage 12. |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 13-18 |
 | | stage 17 |
| Amnion
| | 19-22 |  | | stage 22 |
 | | stage 22 |
 | | stage 22 |
| Amnion
Eye
Notochord
Sclerotome
|
Entry 2| GEISHA Id | Col9.Chimal-Monroy.2003 | Data Source | Publication | | Complete cDNA Template Probe | show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACCAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTT
TGAAGTCCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCCCAGCCCGGATA
AGCCAGACAGTGATTGAGAGAGGTCTTCCTGGTCCACCAGGCCCCCCAGGTCCACCAGGGCCACCAGGAGTTCCTGGCA
TTGATGGCATCGATGGAGAGAGAGGACCTAACGGCCCCCCCGGTCCACCGGGTCCGGACGGCGACGCAGGCAAAGCGGG
ATCCCCGGGCCTGCCTGGAGAGCCAGGAGCTGATGGGTTAACAGGCCCTGATGGATCACCAGGTGCCACAGGACCGAAA
GGACAGAAGGGTGAGCCAGGACCTCCAGGTGCTCGTGGACTTCCGGGCAAGGGTCTTCTTGGACCACCTGGTCCAGCTG
GTGCTGCAGGACTTCCCGGTGAAGTAGGCCGTGCTGGCCCACCTGGTGATCCAGGAAAAAGGGGACCACCAGGACCACC
AGGACCACCAGGCCCTCGAGGAACAATTGGTCTGCAAGACGGTGACCCATTGTGTCCCAATGCTTGTCCACCTGGCCGC
CCAGGACATGCTGGCCTAATGGGAATGAAGGGACAGAAAGGCTCAAAAGGAGAATCTGGTGAACCAGGAAAACAAGGTT
ATAAGGGTGAAGAAGGGGATCAAGGTCCCATTGGTGAAGTTGGAGCTCAAGGCCCTCCAGGCATCCTAGGTATCAGAGG
TATAACTGGAATAACAGGACCTAAAGGTAACAAAGGAGCTCGTGGCCTTGATGGCGATCCTGGTCCCCAAGGTCTTCCT
GGTGCACCTGGGGATCAAGGACAGAGAGGTCCAGTGGGAGAAGAGGGTCCAAAGGGAGAAAGAGGTCCTCAAGGGACAA
GAGGAATAAACGGTCTCCCTGGGCCTAAAGGAGAGTCTGGCTTGCCAGGAGTTGATGGCCGGGAAGGTATCCCTGGAAT
GCCCGGAGCAAAGGGTGAACCAGGAAAACCTGGTACTCCAGGTGATACAGGACCTCCGGGATTGCCAGGTTTACCAGGC
TCTCCAGGTATGAAAGGGATTCCTGGCCCAAAGGGTAATAGAGGTCCTCCTGGAGTGCCGGGTTTGATGGGAAATTCTG
GCAAACCGGGTGAACAGGGACCAGAGGGGGAAGCAGGTCCAACGGGACCCCGGGGACCACCGGGTAGCAGAGGAGAGCC
AGGTCCTGCAGGTCCTCCAGGTTTACCAGGGAAATGGGGTCCCCAGGGTGACATAGGACTTCCTGGACTGCCAGGTCCT
CCAGGCCTACCTGGTGGTAAGGGTGACCGGGGTTCAGCGGGTGAACCAGGACCTAAGGGTGAACAAGGTGCACCTGGAT
CAGAAGGAGATGCAGGAGAAAAGGGTGACTTAGGTGATATGGGATTACCAGGTGCAAAGGGATCTGTTGGTAATCCTGG
AGACCCCGGTTCCCGTGGGCCGGAGGGAAGTCGGGGACTGCCTGGCATGGAAGGGCCACGAGGTGCACCTGGACCACGA
GGCTTGCAGGGTGAACAAGGTGCTCCAGGTCTGCCTGGCAGCCAAGGTCCAGCTGGAAAAGAACCAACTGATCAGCACA
TTAAGCAAGTCTGCATGAGAGTCATGCAAGAACAACTCTCTCAGCTGGCAGCCAGTCTTAGGCGGCCAGAATTTGGTGC
TCCAGGTCTTCCTGGCCGACCTGGACCTCCAGGTGCTCCAGGGCCTCCTGGGGAAAATGGTTTCCCAGGACAGCTTGGG
CCCCGTGGCTTGCCTGGCCTTAAAGGTCCTCCTGGTGAGATCGGTCGTAAAGGTCCAAAAGGTGAAGCAGGAGAAAGGG
GAGAAAGAGGATTTCCAGGCAGAGGAGTGAAAGGTCTCCCGGGACCGAGAGGTCTCCCAGGTGAACCAGGCAAACCCAG
CTATGGCAGGGAAGGCCGTGATGGTGTACGAGGTCCCCCTGGGGTGGCCGGTCAGCCTGGGATTCCTGGTCCTCCTGGC
CCTCCCGGCCCTCCTGGGTACTGCGAGCCGTCGTCTTGCCGAATGCAGGCTGGACAGAGAGCTGCTGGTAAGAACATGA
AAGGGCCATGAATGGGCAACGCAAAAGTCACAAAGCATTAGCATCAATTTACATCCTGCACAGACAGCTGAAAAAAAAA
AAACAAAAATAAGGAATGGAGGAGAAACACAACCTTGCACCCAAGATTTCAGTAAGGCATTTTGAACACAGTGGTTGTA
CATTGTTTGTAAAGGCACACTTGGCAACACGAGTTGGAACAATGGTGCTTGCAGAAATATACAAGAAGTCTTTTGGCTC
TTTCTCCCTTTGGAAAAATAAAGGCACTTGTTAATTAAGATTGTTTTTAAATAAAGAGTTGCCCTGAACATACTTTTAC
CCATACTTAATTTCTTTGTATGAAATGCAGTGACAGAACATGTCTTCAGACATAAAATTAAAAAAAAAAAGGAATAGTT
TATTGACTTCGGTTGTAGCTTTTTTTTTTTCTTCTTCTTCTTTTTGTGCTTGTAAAATAAAATCTAGAGCTCCCTTGAG
CAGATTACATCACTTCATATGCAGGCACTTCATTGCATGTACGTGCTGTACAGGATACGCTATAAGCCTCCCTCAGCTC
TTTGGTTCCATTGTAGAAACACAAGGGGAGACTGTTCTCACAGAAAGCTGCCGCTGCTGCCATCTTTTATGCTGTAAAT
CTGTACATGTACGATCACTGGGTTCTGGTGAATAAGCCACATGGAATAACCTCTTCATTTTCCACTTCAGTTTGTGTTG
CGTTCTTAATTTCAGATGAAGCCTATTCCAGTTTGACTCCTTCTATGTGAAATTAAAAAAAAGGCAGGAAGCCCCTGTC
AGGGGAATGTTGAGTCCCAGAAATATACAAGTTTTGTAGCCAAGGTTACATATTTTGAAGTCATGTCTGTGGTTGTACA
AAAACCCAAATAAATAACGTTTTAACTCCCTGGTTGCTTTTGTATGTATGTTTACATTCAGTACCAATAAACAGAACAG
CTAGAAGACCACCTGAGTTGCCTTTTTTAGAGAAACTCAATTTGTAGAGAAAAATATGCAATGTGGATATTTTGTTTCT
CTCTGTATAAATTAAAGTGTGTTTTTTGACTTA | | Citation | Chimal-Monroy J, Rodriguez-Leon J, Montero JA, Gañan Y, Macias D, Merino R, Hurle JM. Analysis of the molecular cascade responsible for mesodermal limb chondrogenesis: Sox genes and BMP signaling. Dev Biol. 2003 May 15;257(2):292-301. | | Copyright | Reprinted with permission from Elsevier.
Copyright © 2003 Elsevier B.V. All rights reserved.
| | Comments | As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001100911.1).
There are several type IX collagen genes in chick. In the paper only type IX collagen is specified. The sequence shown here is for type 9A1. |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 31 |  | | stage 31 |
| Leg
Mesoderm
|
Entry 3| GEISHA Id | ColIX.DiasdaSilva.2007 | Data Source | Publication | | Complete cDNA Template Probe | show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACCAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTT
TGAAGTCCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCCCAGCCCGGATA
AGCCAGACAGTGATTGAGAGAGGTCTTCCTGGTCCACCAGGCCCCCCAGGTCCACCAGGGCCACCAGGAGTTCCTGGCA
TTGATGGCATCGATGGAGAGAGAGGACCTAACGGCCCCCCCGGTCCACCGGGTCCGGACGGCGACGCAGGCAAAGCGGG
ATCCCCGGGCCTGCCTGGAGAGCCAGGAGCTGATGGGTTAACAGGCCCTGATGGATCACCAGGTGCCACAGGACCGAAA
GGACAGAAGGGTGAGCCAGGACCTCCAGGTGCTCGTGGACTTCCGGGCAAGGGTCTTCTTGGACCACCTGGTCCAGCTG
GTGCTGCAGGACTTCCCGGTGAAGTAGGCCGTGCTGGCCCACCTGGTGATCCAGGAAAAAGGGGACCACCAGGACCACC
AGGACCACCAGGCCCTCGAGGAACAATTGGTCTGCAAGACGGTGACCCATTGTGTCCCAATGCTTGTCCACCTGGCCGC
CCAGGACATGCTGGCCTAATGGGAATGAAGGGACAGAAAGGCTCAAAAGGAGAATCTGGTGAACCAGGAAAACAAGGTT
ATAAGGGTGAAGAAGGGGATCAAGGTCCCATTGGTGAAGTTGGAGCTCAAGGCCCTCCAGGCATCCTAGGTATCAGAGG
TATAACTGGAATAACAGGACCTAAAGGTAACAAAGGAGCTCGTGGCCTTGATGGCGATCCTGGTCCCCAAGGTCTTCCT
GGTGCACCTGGGGATCAAGGACAGAGAGGTCCAGTGGGAGAAGAGGGTCCAAAGGGAGAAAGAGGTCCTCAAGGGACAA
GAGGAATAAACGGTCTCCCTGGGCCTAAAGGAGAGTCTGGCTTGCCAGGAGTTGATGGCCGGGAAGGTATCCCTGGAAT
GCCCGGAGCAAAGGGTGAACCAGGAAAACCTGGTACTCCAGGTGATACAGGACCTCCGGGATTGCCAGGTTTACCAGGC
TCTCCAGGTATGAAAGGGATTCCTGGCCCAAAGGGTAATAGAGGTCCTCCTGGAGTGCCGGGTTTGATGGGAAATTCTG
GCAAACCGGGTGAACAGGGACCAGAGGGGGAAGCAGGTCCAACGGGACCCCGGGGACCACCGGGTAGCAGAGGAGAGCC
AGGTCCTGCAGGTCCTCCAGGTTTACCAGGGAAATGGGGTCCCCAGGGTGACATAGGACTTCCTGGACTGCCAGGTCCT
CCAGGCCTACCTGGTGGTAAGGGTGACCGGGGTTCAGCGGGTGAACCAGGACCTAAGGGTGAACAAGGTGCACCTGGAT
CAGAAGGAGATGCAGGAGAAAAGGGTGACTTAGGTGATATGGGATTACCAGGTGCAAAGGGATCTGTTGGTAATCCTGG
AGACCCCGGTTCCCGTGGGCCGGAGGGAAGTCGGGGACTGCCTGGCATGGAAGGGCCACGAGGTGCACCTGGACCACGA
GGCTTGCAGGGTGAACAAGGTGCTCCAGGTCTGCCTGGCAGCCAAGGTCCAGCTGGAAAAGAACCAACTGATCAGCACA
TTAAGCAAGTCTGCATGAGAGTCATGCAAGAACAACTCTCTCAGCTGGCAGCCAGTCTTAGGCGGCCAGAATTTGGTGC
TCCAGGTCTTCCTGGCCGACCTGGACCTCCAGGTGCTCCAGGGCCTCCTGGGGAAAATGGTTTCCCAGGACAGCTTGGG
CCCCGTGGCTTGCCTGGCCTTAAAGGTCCTCCTGGTGAGATCGGTCGTAAAGGTCCAAAAGGTGAAGCAGGAGAAAGGG
GAGAAAGAGGATTTCCAGGCAGAGGAGTGAAAGGTCTCCCGGGACCGAGAGGTCTCCCAGGTGAACCAGGCAAACCCAG
CTATGGCAGGGAAGGCCGTGATGGTGTACGAGGTCCCCCTGGGGTGGCCGGTCAGCCTGGGATTCCTGGTCCTCCTGGC
CCTCCCGGCCCTCCTGGGTACTGCGAGCCGTCGTCTTGCCGAATGCAGGCTGGACAGAGAGCTGCTGGTAAGAACATGA
AAGGGCCATGAATGGGCAACGCAAAAGTCACAAAGCATTAGCATCAATTTACATCCTGCACAGACAGCTGAAAAAAAAA
AAACAAAAATAAGGAATGGAGGAGAAACACAACCTTGCACCCAAGATTTCAGTAAGGCATTTTGAACACAGTGGTTGTA
CATTGTTTGTAAAGGCACACTTGGCAACACGAGTTGGAACAATGGTGCTTGCAGAAATATACAAGAAGTCTTTTGGCTC
TTTCTCCCTTTGGAAAAATAAAGGCACTTGTTAATTAAGATTGTTTTTAAATAAAGAGTTGCCCTGAACATACTTTTAC
CCATACTTAATTTCTTTGTATGAAATGCAGTGACAGAACATGTCTTCAGACATAAAATTAAAAAAAAAAAGGAATAGTT
TATTGACTTCGGTTGTAGCTTTTTTTTTTTCTTCTTCTTCTTTTTGTGCTTGTAAAATAAAATCTAGAGCTCCCTTGAG
CAGATTACATCACTTCATATGCAGGCACTTCATTGCATGTACGTGCTGTACAGGATACGCTATAAGCCTCCCTCAGCTC
TTTGGTTCCATTGTAGAAACACAAGGGGAGACTGTTCTCACAGAAAGCTGCCGCTGCTGCCATCTTTTATGCTGTAAAT
CTGTACATGTACGATCACTGGGTTCTGGTGAATAAGCCACATGGAATAACCTCTTCATTTTCCACTTCAGTTTGTGTTG
CGTTCTTAATTTCAGATGAAGCCTATTCCAGTTTGACTCCTTCTATGTGAAATTAAAAAAAAGGCAGGAAGCCCCTGTC
AGGGGAATGTTGAGTCCCAGAAATATACAAGTTTTGTAGCCAAGGTTACATATTTTGAAGTCATGTCTGTGGTTGTACA
AAAACCCAAATAAATAACGTTTTAACTCCCTGGTTGCTTTTGTATGTATGTTTACATTCAGTACCAATAAACAGAACAG
CTAGAAGACCACCTGAGTTGCCTTTTTTAGAGAAACTCAATTTGTAGAGAAAAATATGCAATGTGGATATTTTGTTTCT
CTCTGTATAAATTAAAGTGTGTTTTTTGACTTA | | Citation | Dias da Silva MR, Tiffin N, Mima T, Mikawa T, Hyer J. FGF-mediated induction of ciliary body tissue in the chick eye. Dev Biol. 2007 Apr 1;304(1):272-85. | | Copyright | Reprinted with permission from Elsevier.
Copyright © 2007 Elsevier B.V. All rights reserved. |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 25-26 |  | | stage 26 |
 | | stage 26 |
 | | stage 26 |
| Eye
Retina
|
Entry 4| GEISHA Id | COLIX.Zhang.2003 | Data Source | Publication | | Complete cDNA Template Probe | show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACCAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTT
TGAAGTCCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCCCAGCCCGGATA
AGCCAGACAGTGATTGAGAGAGGTCTTCCTGGTCCACCAGGCCCCCCAGGTCCACCAGGGCCACCAGGAGTTCCTGGCA
TTGATGGCATCGATGGAGAGAGAGGACCTAACGGCCCCCCCGGTCCACCGGGTCCGGACGGCGACGCAGGCAAAGCGGG
ATCCCCGGGCCTGCCTGGAGAGCCAGGAGCTGATGGGTTAACAGGCCCTGATGGATCACCAGGTGCCACAGGACCGAAA
GGACAGAAGGGTGAGCCAGGACCTCCAGGTGCTCGTGGACTTCCGGGCAAGGGTCTTCTTGGACCACCTGGTCCAGCTG
GTGCTGCAGGACTTCCCGGTGAAGTAGGCCGTGCTGGCCCACCTGGTGATCCAGGAAAAAGGGGACCACCAGGACCACC
AGGACCACCAGGCCCTCGAGGAACAATTGGTCTGCAAGACGGTGACCCATTGTGTCCCAATGCTTGTCCACCTGGCCGC
CCAGGACATGCTGGCCTAATGGGAATGAAGGGACAGAAAGGCTCAAAAGGAGAATCTGGTGAACCAGGAAAACAAGGTT
ATAAGGGTGAAGAAGGGGATCAAGGTCCCATTGGTGAAGTTGGAGCTCAAGGCCCTCCAGGCATCCTAGGTATCAGAGG
TATAACTGGAATAACAGGACCTAAAGGTAACAAAGGAGCTCGTGGCCTTGATGGCGATCCTGGTCCCCAAGGTCTTCCT
GGTGCACCTGGGGATCAAGGACAGAGAGGTCCAGTGGGAGAAGAGGGTCCAAAGGGAGAAAGAGGTCCTCAAGGGACAA
GAGGAATAAACGGTCTCCCTGGGCCTAAAGGAGAGTCTGGCTTGCCAGGAGTTGATGGCCGGGAAGGTATCCCTGGAAT
GCCCGGAGCAAAGGGTGAACCAGGAAAACCTGGTACTCCAGGTGATACAGGACCTCCGGGATTGCCAGGTTTACCAGGC
TCTCCAGGTATGAAAGGGATTCCTGGCCCAAAGGGTAATAGAGGTCCTCCTGGAGTGCCGGGTTTGATGGGAAATTCTG
GCAAACCGGGTGAACAGGGACCAGAGGGGGAAGCAGGTCCAACGGGACCCCGGGGACCACCGGGTAGCAGAGGAGAGCC
AGGTCCTGCAGGTCCTCCAGGTTTACCAGGGAAATGGGGTCCCCAGGGTGACATAGGACTTCCTGGACTGCCAGGTCCT
CCAGGCCTACCTGGTGGTAAGGGTGACCGGGGTTCAGCGGGTGAACCAGGACCTAAGGGTGAACAAGGTGCACCTGGAT
CAGAAGGAGATGCAGGAGAAAAGGGTGACTTAGGTGATATGGGATTACCAGGTGCAAAGGGATCTGTTGGTAATCCTGG
AGACCCCGGTTCCCGTGGGCCGGAGGGAAGTCGGGGACTGCCTGGCATGGAAGGGCCACGAGGTGCACCTGGACCACGA
GGCTTGCAGGGTGAACAAGGTGCTCCAGGTCTGCCTGGCAGCCAAGGTCCAGCTGGAAAAGAACCAACTGATCAGCACA
TTAAGCAAGTCTGCATGAGAGTCATGCAAGAACAACTCTCTCAGCTGGCAGCCAGTCTTAGGCGGCCAGAATTTGGTGC
TCCAGGTCTTCCTGGCCGACCTGGACCTCCAGGTGCTCCAGGGCCTCCTGGGGAAAATGGTTTCCCAGGACAGCTTGGG
CCCCGTGGCTTGCCTGGCCTTAAAGGTCCTCCTGGTGAGATCGGTCGTAAAGGTCCAAAAGGTGAAGCAGGAGAAAGGG
GAGAAAGAGGATTTCCAGGCAGAGGAGTGAAAGGTCTCCCGGGACCGAGAGGTCTCCCAGGTGAACCAGGCAAACCCAG
CTATGGCAGGGAAGGCCGTGATGGTGTACGAGGTCCCCCTGGGGTGGCCGGTCAGCCTGGGATTCCTGGTCCTCCTGGC
CCTCCCGGCCCTCCTGGGTACTGCGAGCCGTCGTCTTGCCGAATGCAGGCTGGACAGAGAGCTGCTGGTAAGAACATGA
AAGGGCCATGAATGGGCAACGCAAAAGTCACAAAGCATTAGCATCAATTTACATCCTGCACAGACAGCTGAAAAAAAAA
AAACAAAAATAAGGAATGGAGGAGAAACACAACCTTGCACCCAAGATTTCAGTAAGGCATTTTGAACACAGTGGTTGTA
CATTGTTTGTAAAGGCACACTTGGCAACACGAGTTGGAACAATGGTGCTTGCAGAAATATACAAGAAGTCTTTTGGCTC
TTTCTCCCTTTGGAAAAATAAAGGCACTTGTTAATTAAGATTGTTTTTAAATAAAGAGTTGCCCTGAACATACTTTTAC
CCATACTTAATTTCTTTGTATGAAATGCAGTGACAGAACATGTCTTCAGACATAAAATTAAAAAAAAAAAGGAATAGTT
TATTGACTTCGGTTGTAGCTTTTTTTTTTTCTTCTTCTTCTTTTTGTGCTTGTAAAATAAAATCTAGAGCTCCCTTGAG
CAGATTACATCACTTCATATGCAGGCACTTCATTGCATGTACGTGCTGTACAGGATACGCTATAAGCCTCCCTCAGCTC
TTTGGTTCCATTGTAGAAACACAAGGGGAGACTGTTCTCACAGAAAGCTGCCGCTGCTGCCATCTTTTATGCTGTAAAT
CTGTACATGTACGATCACTGGGTTCTGGTGAATAAGCCACATGGAATAACCTCTTCATTTTCCACTTCAGTTTGTGTTG
CGTTCTTAATTTCAGATGAAGCCTATTCCAGTTTGACTCCTTCTATGTGAAATTAAAAAAAAGGCAGGAAGCCCCTGTC
AGGGGAATGTTGAGTCCCAGAAATATACAAGTTTTGTAGCCAAGGTTACATATTTTGAAGTCATGTCTGTGGTTGTACA
AAAACCCAAATAAATAACGTTTTAACTCCCTGGTTGCTTTTGTATGTATGTTTACATTCAGTACCAATAAACAGAACAG
CTAGAAGACCACCTGAGTTGCCTTTTTTAGAGAAACTCAATTTGTAGAGAAAAATATGCAATGTGGATATTTTGTTTCT
CTCTGTATAAATTAAAGTGTGTTTTTTGACTTA | | Citation | Zhang D, Schwarz EM, Rosier RN, Zuscik MJ, Puzas JE, O'Keefe RJ.ALK2 functions as a BMP type I receptor and induces Indian hedgehog in chondrocytes during skeletal development. J Bone Miner Res. 2003 Sep; 18(9):1593-604 | | Copyright | Copyright © 1999 - 2018 John Wiley & Sons, Inc. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_001100911.1). |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 19-23 |  | | stage 23 |
| Wing
|
Entry 5| GEISHA Id | COL9A1.Smith.2018 | Data Source | Publication | | Complete cDNA Template Probe | show CTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACTCTCGTTAACAGGACTTATGACAGGG
AACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAAACCAGCAGAGAAGATGAAAAGCAAC
TGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCAGCTACCATCCAGCAACAATCAAGAT
TGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGATTGGCCAAGATGACTTGCCAGGCTT
TGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCAGAGAGTAGTGGGTTCTACTGCTCTA
CAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCAATATATTCCAATGGATTGCCTGATG
AATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACTGGACTATTTGGCAGATTCAGGATTC
TTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGAGTTTTCTTATAAAGGAGTGGATGGA
AGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGGCACAAGCTTATGATAAGTGTGGAAA
CAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAAAACCAAAGGGGAAAATCAGTGTTGA
TGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTTTGAAGTCCAGTGGATGCTGATTCAC
TGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCC | | Citation | Jonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171. | | Copyright | Copyright © 2018. Published by The Company of Biologists Ltd. | | Comments | The complete cDNA template sequence was obtained from the information from the publication as described in Smith et al. 2018. |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 19-23 |  | | stage 23 |
| Retina
| | all | | |
MouseFrogFruit FlyZebra FinchZebrafish |
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