GEISHA - A Chicken Embryo Gene Expression Database
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CLDN3
claudin 3

Gene
Official SymbolCLDN3
Official Full Nameclaudin 3
CGNC ID49012
also known asclaudin-3, claudin-3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204202
PolypeptideNP_989533
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2952
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1365ENSG00000165215MIM:602910
Mouse12739ENSMUSG00000070473MGI:1329044
Xenopus448229, 447224972425
Zebrafish81587ENSDARG00000069503ZDB-GENE-010328-8ZFIN:ZDB-GENE-010328-8
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene374029
Ensembl Gene
KEGGgga:374029

Entry 1

GEISHA IdClaudin-3.Haworth.2005Data SourcePublication
Complete cDNA Template Probeshow
GCTCTGCCGTTACCAGCTACGACAAGAGGAACTATGTGTGAGCCCCCCGCGCCCCCCGGCCCAGCCCTATGGGGGGCTC
AGCCGCCCCCGCGCCCACTTCCAGCCCCACCGCCGGGACCGCCACCGCCGGGGACCCTCCGCCCCGCGGGCCGGGGAGA
GAGCTCCTGTCCCCGAGGGTGCCCAGCACGGTGGGAGCAGGCGGGGAAATGACGGGGGGGCGATGGGATCGGTGCCGGG
GTCAGGGCCGGGCAGTGTGAGCGGGAGCCGGGCGGGCGGCTGTGTCAATACTGATGGTTTCATGTAAACAGAGCCGGTT
TCGGGTTGCCAGGAGAGCTGTGTGCAG
CitationHaworth KE, El-Hanfy A, Prayag S, Healy C, Dietrich S, Sharpe P. Expression of Claudin-3 during chick development. Gene Expr Patterns. 2005 Dec;6(1):40-4. Epub 2005 Jul 18.
CopyrightReprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
CommentsSequence below was obtained using the NCBI sequence (AF334677) and primers provided in the publication. The primer sequences used are as follows F-GCTCTGCCGTTACCAGCTACG and R-CTGCACACAGCTCTCCTGGCAAC.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Area Opaca
Area Pellucida
Early Endoderm
Epiblast
Head Process
Hensen's Node
Paraxial Mesoderm
Primitive Streak
Surface Ectoderm
 
7-12
stage 8
stage 10
stage 11
Anterior Intestinal Portal
Ear/Otic Placcode
Early Endoderm
Endoderm
Head Process
Headfold
Oral Pharynx
Pharynx
Primitive Streak
Somites
Surface Ectoderm
Tail
Subcephalic Pocket
13-18
stage 13
stage 18
stage 18
Anterior Intestinal Portal
Ear/Otic Placcode
Endoderm
Liver
Oral Pharynx
Pharyngeal Arches and Clefts
Stomodeum
19-22
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 22
stage 22
Ear/Otic Placcode
Gut
Liver
Liver
Lung
Nasal Placcode/Nerve
Nephric Ducts
Nephric Tubules
Pharyngeal Arches and Clefts
Intestine
Mesonephros

Entry 2

GEISHA IdCLDN3.Haddad.2011Data SourcePublication
Complete cDNA Template Probeshow
GTTGAAAAGGCGGGGNTGCAAGGCCCACAAACGTGTGCTGTTTTTGCCCCCGTCCCGTTGTTGTTTTGTGCNTGGTGGG
GGGTTCAGCCCCCATCCTTGCCCACNTCCAGCANTACCGGTGTGAAGTGAGGGGTTCTCAGCTCTCACTGCTGCCTTTC
GGGAAGGTTGAAGGGGTCACCGGTGGCTGTGGGTTCCCCAAAGGGCACCGAGGTGTAGGTGGGCAGCAGGGCACACAGC
AAGCCAAGAGCCGGGCAGCCTCCGGCCGTGCACCGCAGCCCTCCATCTCAGCAGGCTGTGACGATGGCACCCATCCCAC
CCCACGCCCCAAAACCAGGCCCGTGTCATGGTGGCCATCTCAGGTGGCTCTCCCCCTCCCTCCAATGCGCCATCTCTGC
AAACAAAGGGGAGGGTGTGGGACACTGCGAGGGAGCCAGTGGAGAGGAGAGTCTGGCGGAGAAACCCCACCCCGGGCGG
GCGCTGAGCGAGCGCAGCCCGGCCCCAGCCCCGCCAGCCCATATAAGCACAGGTGCACCCAGGTGTAAGCCGATCCCCA
CGGCTGCAGCGGCGAGCGGAGCACAGGGTGGTTTCGGTCAGCGGGTTCCTCTCTGCCATCGCCCGGGAGCCGGACACCA
TGTCTATGGGGCTGGAGATCGGTGGGGTGGCCCTGTCGGTGCTGGGCTGGCTGTGCAGCATCATCTGCTGCGCGCTGCC
CATGTGGAGGGTGACGGCCTTCATCGGCAACAACATCGTGACGGCGCAGATCATCTGGGAAGGGCTGTGGATGAACTGC
GTGGTGCAGAGCACGGGGCAGATGCAGTGCAAGGTGTACGACTCCATGCTGGCCCTGCCGCAGGACCTGCAGGCCGCCC
GCGCGCTGCTGGTGGTGGCCATCGTGCTGGCCGTGCTGGGCCTGATGGTGGCCATCGTGGGCGCCCAGTGCACGCGCTG
CGTGGAGGACGAGACCACCAAGGCCAAGATCACCATCGTCTCCGGCGTCATCTTCCTGCTCTCCGGCATCATGACCCTC
ATCCCCGTCTCCTGGTCGGCCAACACCATCATCCGGGATTTCTACAACCCGCTGGTGATCGACGCTCAGAAGCGGGAGC
TGGGCACGTCCCTCTACGTGGGCTGGGCGGCCTCCGCGCTGCTGCTCTTTGGGGGGGCCCTGCTGTGCTGCTCCTGCCC
CCCCAAAGACGAGAGGTACGCGCCCAGCAAGGTGGCTTACTCCGCCCCGCGCTCTGCCGTTACCAGCTACGACAAGAGG
AACTATGTGTGAGCCCCCCGCGCCCCCCGGCCCAGCCCTATGGGGGGCTCAGCCGCCCCCGCGCCCACTTCCAGCCCCA
CCGCCGGGACCGCCACCGCCGGGGACCCTCCGCCCCGCGGGCCGGGGAGAGAGCTCCTGTCCCCGAGGGTGCCCAGCAC
GGTGGGAGCAGGCGGGGAAATGACGGGGGGGCGATGGGATCGGTGCCGGGGTCAGGGCCGGGCAGTGTGAGCGGGAGCC
GGGCGGGCGGCTGTGTCAATACTGATGGTTTCATGTAAACAGAGCCGGTTTCGGGTTGCCAGGAGAGCTGTGTGCAGCA
GCGCCAGGAGGAAGCTCCGTGCCCCCCCGCCCTGCCCCGCCAGCCCCCCCGGGACCCCCCGCCGGCCGGGCACCTTCTC
TCCCTGTTACGCGTGGTCTGTACAAGTTACATTTGTCAATAAAGGAATCCTGTTTTGGTAAAAAAAAAAAAAAAAAA
CitationHaddad N, Andalousi JE, Khairallah H, Yu M, Ryan AK, Gupta IR. The tight junction protein claudin-3 shows conserved expression in the nephric duct and ureteric bud and promotes tubulogenesis in vitro. Am J Physiol Renal Physiol. 2011 Nov;301(5):F1057-65.
CopyrightCopyright © 2011 the American Physiological Society
Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204202.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-34
stage 34
stage 34
stage 34
Ectoderm
Endoderm
Nephric Ducts
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2952

Mouse

EmageMGI:1329044
EurexpressMGI:1329044
MGI GXDMGI:1329044

Frog

Xenbase972425

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-010328-8
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