GEISHA - A Chicken Embryo Gene Expression Database
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NOTO
notochord homeobox

Gene
Official SymbolNOTO
Official Full Namenotochord homeobox
CGNC ID49744
also known asCNOT, GNOT1, notochord homeobox|Gnot1 homeodomain protein, SMYD family member 5 , NOT1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205354
PolypeptideNP_990685
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.677
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene396302
Ensembl GeneENSGALG00000016090
KEGGgga:396302

Entry 1

GEISHA IdC09Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCTCAAGCAGCAGTACATGGTGGGCACAGAGCGAGTGGACCTGGCTGCAACGCTGCGTCTCACAGAGACCCAGGTGAAA
GTCTGGTTCCAGAACCGGAGGATCAAATGGAGGAAGCAGAGCATGGAGCAGAAGAAGGCAAAGCTGTCACAGTTTGGGG
TGATACAGCCCACCTCTGCTGGCCCCACGGATGTCAAGGAGCATGAGGAGGACACAGTGGAGGTTGAGCTTTGAGCAGC
TGATGGGATGCAGCTGCCACTGTTGTTTTTGCAGCCACGCCTGCCTGATGGAGGTACTGGGGATGCAGGCACATCTGTG
CTTGCTTTGTCCAAGCTAGACTTGAAGTTCTTGCTCTGAGAGTTTTGAGCTACAGAACTAAACTGCCATTGGGTGGGAA
GAAGCATCCAAAAGTGTAGAGACCCCTATTTGGTAACCGGTGCTGTAACTCTTGGTCTTGATGGTGCCATCGTTGTGGC
AAAGCATGTGATCTCATTTGCTCTCAAAGTGCTAGGAAGCACAGTTTCCAATAAAGAGGCTGGGGTGGCGGTCAGACGG
TGTCTCTGATGGCAGTGAGCATGGCAGCATCTGAACATGG
Reverse cDNA Template Probeshow
TTGGCGAGTACATCTGCAACCACACACTGCAGCTCGCTGTCGTATTCCTGGTGGGTGGGAGGGCTCGGAGGGGTCAGGA
CTGAGTATTCACGTTTCCCTGTCTGTGTTTTAGTAATTCCTAGGGGCTGGTGTGCACAGCAGCAGCAGCAGCTTTTGGC
CATGCAGCCGGTGCTCAGGCTGTCACCTCATCCCAGGGCACCAGGCACAACATCTCATGAGCTCAGGATAATTCATCAT
GTCTCTTTCCAACCCCAGAATCATAGAATCATAGAATTGCCTGGGTTGAAAAGGACCACAGTGATCATCTGGTTCCAAC
CCCCCCGCTATGTGCAGGGTCGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCATCCTGGCCTTGAATGCCTCCA
GGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCCAGTGCGTCACCACCCTCTGAGTGGAAAAACTGTATATTGC
CTTCCTCTAGTGTTAGAGAGAAAAGAAATAACATTTTTTTTTCTTTAAAAAAAAAAAAAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
stage 6
Area Pellucida
Head Mesenchyme
Head Process
Mesoderm, early
Notochord
 
7-12
stage 7
stage 9
stage 10
stage 12
stage 12
Head Process
Mesoderm, early
Neural Plate/Tube
Notochord
Surface Ectoderm
 
13-18
stage 13
stage 15
stage 15
stage 16
stage 16
stage 16
stage 16
stage 16
stage 16
stage 16
Diencephalon
Head Process
Notochord
Pineal Gland
Surface Ectoderm
 
19-23
stage 22
stage 23
stage 23
Face Mesenchyme
Pharyngeal Arches and Clefts
Pineal Gland
Wing Mesenchyme
 

Entry 2

GEISHA IdNot.Levin.1995Data SourcePublication
Complete cDNA Template Probeshow
CCCGCTGGGCCCTGCTGTGCTGTGGAGGTCTGGAGGGCCCTGCAAAATGAAGAGAGTGCGCACAGTCTTCAAACCGGAG
CAGTTGGAGAGGCTGGAGCAAGAGTTCCTCAAGCAGCAGTACATGGTGGGCACAGAGCGAGTGGACCTGGCTGCAACGC
TGCGTCTCACAGAGACCCAGGTGAAAGTCTGGTTCCAGAACCGGAGGATCAAATGGAGGAAGCAGAGCATGGAGCAGAA
GAAGGCAAAGCTGTCACAGTTTGGGGTGATACAGCCCACCTCTGCTGGCCCCACGGATGTCAAGGAGCATGAGGAGGAC
ACAGTGGAGGTTGAGCTTTGAGCAGCTGATGGGATGCAGCTGCCACTGTTGTTTTTGCAGCCACGCCTGCCTGATGGAG
GTACTGGGGATGCAGGCACATCTGTGCTTGCTTTGTCCAAGCTAGACTTGAAGTTCTTGCTCTGAGAGTTTTGAGCTAC
AGAACTAAACTGCCATTGGGTGGGAAGAAGCATCCAAAAGTGTAGAGACCCCTATTTGGTAACCGGTGCTGTAACTCTT
GGTCTTGATGGTGCCATCGTTGTGGCAAAGCATGTGATCTCATTTGCTCTCAAAGTGCTAGGAAGCACAGTTTCCAATA
GAGAGGCTGGGGTGGCGGTCAGACGGTGTCTCTGATGGCAGTGAGCATGGCAGCATCTGAACATGGGGTCACTCGTGTT
TCAGGTGACTGTGTGCTCCTACGAGGGAGAGCTGTGCTGGGAGGAGATTTGCCTCTGATGGTTTCTCCTGGTCGTCTTG
ATTCCCATGTTGGATGCTGAGATCACAACGACAACAAAGTGAAAACTGAAAAGTCAAAAAAAAAAAAAAAAAAAAA
CitationLevin M, Johnson RL, Stern CD, Kuehn M, Tabin C (1995). A molecular pathway determining left-right asymmetry in chick embryogenesis. Cell. 1995 Sep 8;82(5):803-14.
CopyrightCopyright © 1995 Elsevier Inc. All Rights reserved.
CommentsProbe desig referenced in paper.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 5
Head Process
Hensen's Node
Notochord
 
31-44
stage 44
  

Entry 3

GEISHA IdNOTO.Anderson.2020Data SourceDirect Submission
Complete cDNA Template Probeshow
CCCGCTGGGCCCTGCTGTGCTGTGGAGGTCTGGAGGGCCCTGCAAAATGAAGAGAGTGCGCACAGTCTTCAAACCGGAG
CAGTTGGAGAGGCTGGAGCAAGAGTTCCTCAAGCAGCAGTACATGGTGGGCACAGAGCGAGTGGACCTGGCTGCAACGC
TGCGTCTCACAGAGACCCAGGTGAAAGTCTGGTTCCAGAACCGGAGGATCAAATGGAGGAAGCAGAGCATGGAGCAGAA
GAAGGCAAAGCTGTCACAGTTTGGGGTGATACAGCCCACCTCTGCTGGCCCCACGGATGTCAAGGAGCATGAGGAGGAC
ACAGTGGAGGTTGAGCTTTGAGCAGCTGATGGGATGCAGCTGCCACTGTTGTTTTTGCAGCCACGCCTGCCTGATGGAG
GTACTGGGGATGCAGGCACATCTGTGCTTGCTTTGTCCAAGCTAGACTTGAAGTTCTTGCTCTGAGAGTTTTGAGCTAC
AGAACTAAACTGCCATTGGGTGGGAAGAAGCATCCAAAAGTGTAGAGACCCCTATTTGGTAACCGGTGCTGTAACTCTT
GGTCTTGATGGTGCCATCGTTGTGGCAAAGCATGTGATCTCATTTGCTCTCAAAGTGCTAGGAAGCACAGTTTCCAATA
GAGAGGCTGGGGTGGCGGTCAGACGGTGTCTCTGATGGCAGTGAGCATGGCAGCATCTGAACATGGGGTCACTCGTGTT
TCAGGTGACTGTGTGCTCCTACGAGGGAGAGCTGTGCTGGGAGGAGATTTGCCTCTGATGGTTTCTCCTGGTCGTCTTG
ATTCCCATGTTGGATGCTGAGATCACAACGACAACAAAGTGAAAACTGAAAAGTCAAAAAAAAAAAAAAAAAAAAA
CommentsImages provided by Claire Anderson. The probe provided by Michael Kessel was synthesized from cDNA clone with Genbank accession X82575.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Early Mesoderm
Epiblast
Hensen's Node
 
7-12
stage 7
stage 8
stage 12
Early Mesoderm
Forebrain
Neural Plate/Tube
Notochord
 
19-21
stage 21
Head Mesenchyme
Leg Mesenchyme
Notochord
Pharyngeal Arches and Clefts
Pineal Gland
Wing Mesenchyme
right

Entry 4

GEISHA IdCNOT1.Stein.1996Data SourcePublication
Complete cDNA Template Probeshow
CCCGCTGGGCCCTGCTGTGCTGTGGAGGTCTGGAGGGCCCTGCAAAATGAAGAGAGTGCGCACAGTCTTCAAACCGGAG
CAGTTGGAGAGGCTGGAGCAAGAGTTCCTCAAGCAGCAGTACATGGTGGGCACAGAGCGAGTGGACCTGGCTGCAACGC
TGCGTCTCACAGAGACCCAGGTGAAAGTCTGGTTCCAGAACCGGAGGATCAAATGGAGGAAGCAGAGCATGGAGCAGAA
GAAGGCAAAGCTGTCACAGTTTGGGGTGATACAGCCCACCTCTGCTGGCCCCACGGATGTCAAGGAGCATGAGGAGGAC
ACAGTGGAGGTTGAGCTTTGAGCAGCTGATGGGATGCAGCTGCCACTGTTGTTTTTGCAGCCACGCCTGCCTGATGGAG
GTACTGGGGATGCAGGCACATCTGTGCTTGCTTTGTCCAAGCTAGACTTGAAGTTCTTGCTCTGAGAGTTTTGAGCTAC
AGAACTAAACTGCCATTGGGTGGGAAGAAGCATCCAAAAGTGTAGAGACCCCTATTTGGTAACCGGTGCTGTAACTCTT
GGTCTTGATGGTGCCATCGTTGTGGCAAAGCATGTGATCTCATTTGCTCTCAAAGTGCTAGGAAGCACAGTTTCCAATA
GAGAGGCTGGGGTGGCGGTCAGACGGTGTCTCTGATGGCAGTGAGCATGGCAGCATCTGAACATGGGGTCACTCGTGTT
TCAGGTGACTGTGTGCTCCTACGAGGGAGAGCTGTGCTGGGAGGAGATTTGCCTCTGATGGTTTCTCCTGGTCGTCTTG
ATTCCCATGTTGGATGCTGAGATCACAACGACAACAAAGTGAAAACTGAAAAGTCAAAAAAAAAAAAAAAAAAAAA
CitationS Stein, K Niss, M Kessel. Differential Activation of the Clustered Homeobox Genes CNOT2 and CNOT1 During Notogenesis in the Chick. Dev Biol. 1996 Dec 15;180(2):519-33. DOI: 10.1006/dbio.1996.0325.
Copyright© 1996 Academic Press. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Stein et al. 1996. CNOT1 is also known as NOTO in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XI
Hypoblast
prestreak embryo
7-12
stage 9
Forebrain
neural folds = prospective forebrain
19-24
stage 24
Limb Buds
 
all
 
  

Entry 5

GEISHA IdCnot.Stein.1995Data SourcePublication
Complete cDNA Template Probeshow
CCCGCTGGGCCCTGCTGTGCTGTGGAGGTCTGGAGGGCCCTGCAAAATGAAGAGAGTGCGCACAGTCTTCAAACCGGAG
CAGTTGGAGAGGCTGGAGCAAGAGTTCCTCAAGCAGCAGTACATGGTGGGCACAGAGCGAGTGGACCTGGCTGCAACGC
TGCGTCTCACAGAGACCCAGGTGAAAGTCTGGTTCCAGAACCGGAGGATCAAATGGAGGAAGCAGAGCATGGAGCAGAA
GAAGGCAAAGCTGTCACAGTTTGGGGTGATACAGCCCACCTCTGCTGGCCCCACGGATGTCAAGGAGCATGAGGAGGAC
ACAGTGGAGGTTGAGCTTTGAGCAGCTGATGGGATGCAGCTGCCACTGTTGTTTTTGCAGCCACGCCTGCCTGATGGAG
GTACTGGGGATGCAGGCACATCTGTGCTTGCTTTGTCCAAGCTAGACTTGAAGTTCTTGCTCTGAGAGTTTTGAGCTAC
AGAACTAAACTGCCATTGGGTGGGAAGAAGCATCCAAAAGTGTAGAGACCCCTATTTGGTAACCGGTGCTGTAACTCTT
GGTCTTGATGGTGCCATCGTTGTGGCAAAGCATGTGATCTCATTTGCTCTCAAAGTGCTAGGAAGCACAGTTTCCAATA
GAGAGGCTGGGGTGGCGGTCAGACGGTGTCTCTGATGGCAGTGAGCATGGCAGCATCTGAACATGGGGTCACTCGTGTT
TCAGGTGACTGTGTGCTCCTACGAGGGAGAGCTGTGCTGGGAGGAGATTTGCCTCTGATGGTTTCTCCTGGTCGTCTTG
ATTCCCATGTTGGATGCTGAGATCACAACGACAACAAAGTGAAAACTGAAAAGTCAAAAAAAAAAAAAAAAAAAAA
CitationS Stein, M Kessel. A Homeobox Gene Involved in Node, Notochord and Neural Plate Formation of Chick Embryos. Mech Dev. 1995 Jan;49(1-2):37-48. doi: 10.1016/0925-4773(94)00300-c.
Copyright© 1995 Published by Elsevier Ireland Ltd.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Stein et al. 1995. CNOT is also known as NOTO in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 4
stage 4
stage 5
stage 6
stage 6
stage 6
stage 6
Early Mesoderm
Ectoderm
Epiblast
Hensen's Node
Notochord
head process
prospective hindbrain
7-12
stage 7
stage 8
stage 9
stage 9
stage 10
stage 10
stage 12
stage 12
Anterior Neuropore
Diencephalon
Early Mesoderm
Forebrain
Headfold
Neural Plate/Tube
Notochord
Telencephalon
sin = sinus rhomboidalis
sin, sinus rhomboidalis
stage 8+
stage 9+
13-18
stage 14
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
Central Nervous System
Diencephalon
Eye
Head Mesenchyme
Neural Plate/Tube
Notochord
Spinal Cord
Telencephalon
Unlabeled
ea, epiphysis anlage
sp, Seessel’s pocket
25
stage 25
Central Nervous System
Limb Buds
Notochord
e, epiphysis
all
 
 
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.677

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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