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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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COL10A1
collagen, type X, alpha 1

Gene

Official Symbol	COL10A1
Official Full Name	collagen, type X, alpha 1
CGNC ID	64139
also known as	collagen alpha-1(X) chain\|collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)\|procollagen, type X, alpha 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003641007
Polypeptide	XP_003641055
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	100858979
Ensembl Gene	ENSGALG00000014965
KEGG	gga:100858979

Entry 1

GEISHA Id	Col10alpha1.Bendall.2003	Data Source	Publication
Complete cDNA Template Probe	show ATGCATTTACAAATATCGTTACTGCTGCTGTTTTGTCTAAACATTGTCCATGGCAGTGATGGATACTTTTCTGAGCGAT ACCAGAAACAGTCCAGCATCAAGGGGCCACCACACTTTCTACCATTCAATGTAAAGAGTCAAGGTGTGCAGATGAGGGG TGAACAAGGGCCCCCTGGTCCCCCAGGCCCTATTGGACCAAGAGGACAACCAGGTCCTGCAGGAAAACCTGGGTTTGGA AGCCCTGGACCCCAAGGTCCCCCTGGTCCCCCAGGACCACCTGGATTCTCCACTGTTGGAAAACCAGGCATACCAGGTC TACCAGGGAAGCCAGGAGAAAGAGGATTAAATGGTGAGAAAGGAGAAGCCGGACCCGTTGGGCTCCCAGGAGCAAGAGG GCCACAAGGACCCCCTGGCATTCCTGGCCCTGCAGGACTGTCTGTCCCTGGAAAGCCAGGACCCCAAGGCCCTCCAGGA GCTCAAGGGCCAAGAGGCCTCCCTGGTGAGAAAGGAGAACAAGGTGTTCCTGGTATAAATGGACAAAAAGGAGAAATGG GATTTGGTGTTCCAGGCCGCCCAGGTAACAGGGGTCTTCCAGGCCCACAGGGACCCCAAGGCCTCCCTGGTCCTGCTGG GATAGGGAAGCCTGGAGAAAATGGCCTTCCAGGTCAGCCAGGTATGAAAGGTGACAGAGGTCTACCAGGAGCACGTGGA GAAGCTGGTATCCCAGGCCCCCAGGGTCCACCAGGAGAACCTGGAGAAGTTGGCATCGGCAAGCCTGGGCCAATGGGAC CACCAGGACCAGCAGGCATCCCCGGAGCCAAAGGATTGCCTGGACCTGCAGGCCTGCCTGGATCCCCAGGTCTTCCAGG ATTTGGAAAGCCAGGATTGCCAGGGATGAAGGGACACAGAGGACCTGAAGGACCTCCTGGCTTTCCAGGACCTAAAGGA GACCAAGGCCCAGCTGGTGTACCAGGAGAACCAGGACCTGCTGGGCCACAAGGAAATATGGGCCCTCAAGGACTCAAAG GCTTGCCTGGTGAGAATGGCTTACCCGGACCCAAAGGTGACATGGGCCCTGTAGGCCCTGCAGGATTCCCAGGAGCCAA GGGTGAAAGAGGTCTACCAGGATTAGATGGTAAACCAGGATATCCAGGTGAGCAGGGTCTTCCTGGTCCTAAGGGACAT CCAGGTCTCCCTGGTCAAAAAGGAGACACTGGCCATGCTGGCCCACCTGGCTTGCCTGGTCCAGTTGGACCACAAGGAG TTAAGGGAGTTCCAGGTATTAATGGTGAACCAGGCCCAAGAGGACCTTCAGGAATACCTGGGATCAGAGGCCCCATTGG TCCCCCTGGCATGCCAGGAGCCCCTGGTGCAAAAGGTGAGGCAGGAGCACCAGGACTGCCAGGCCCAGCAGGTATTGCT ACAAAAGGTTTAAGAGGACCCATGGGACCACCTGGACCTCCTGGACCTAAAGGCAACAGCGGAGAGCCTGGCTTGCCAG GTCCCCCCGGTCCTCCTGGTCCCCCTGGCCAATCCACAATCCCAGAAGGTTATGTTAAAGGAGAGTCTAGAGAACTATC AGGAATGTCTTTCATGAAAGCAGGAGCAAATCAAGCTCTCACAGGAATGCCAGTGTCTGCCTTCACTGTCATTCTCTCA AAAGCCTACCCTGGGGCAACAGTCCCCATCAAATTTGACAAAATCTTGTACAACAGACAGCAACACTATGATCCCAGGA CAGGAATCTTTACCTGCAGGATCCCTGGACTATACTATTTCTCCTATCATGTACATGCAAAAGGAACAAATGTTTGGGT TGCACTCTATAAAAATGGCTCCCCAGTCATGTACACTTATGATGAATACCAGAAAGGATACCTTGACCAGGCCTCAGGC AGTGCTGTCATTGATCTCATGGAGAATGATCAAGTGTGGCTCCAGCTGCCAAATTCAGAATCCAATGGTCTCTATTCCT CTGAATATGTTCATTCTTCTTTCTCAGGTTTCCTATTTGCTCAAATCTAA
Citation	Bendall AJ, Hu G, Levi G, Abate-Shen C. Dlx5 regulates chondrocyte differentiation at multiple stages. Int J Dev Biol. 2003 Jun;47(5):335-44.
Copyright	"Reprinted from Int. J. Dev. Biol., 47, Bendall AJ, Hu G, Levi G, Dlx5 regulates chondrocyte differentiation at multiple stages, 335-44, Copyright (2003), with permission from Copyright © 2003 UBC Press". All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from ensembl (ENSGALG00000014965).

Stage

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Location (click to highlight)

Comments (click to highlight)

31-44

stage 38

stage 44

Wing Bones

comparison with other genes

Entry 2

GEISHA Id	COL10A1.Domowicz.2009	Data Source	Publication
Complete cDNA Template Probe	show AAGCTTAGAAATACAACTTTGGAGACAATCTCTGAATACAATAACTGGTTGGAAATAATCTTCGGATTCATATACAACT CTCAAATTAACATCTTAACTGATTCTAAGCTCTCTATTTGCACCTCAGTGAACAACTACTCACATAATCTCAGAGGAGT ACTCCTGAAAGTAACACCTCGAAGTCGAAAATATGTAATTCTTTAGTTAAAACGTTCACAGAAAAATCCAAATGAAGCA CCTAAAATTATAAACCTTACTTACAATTTTTTTCCATTTGTAACCTTTCTCATTTCTAAAAGCAGAAAGGATGCAAAAG TTTAGAAAATACGAAACTACAGGCAATACAATTTTCATCAACAAGAAGAGGTCCAAGAGAAGAAGAAGAAATTAAAAGG CTTAACAGGACCTAAAATCCTACCCAAAATAGCAACCCCCCATCCCTAAAACACACATATACACACAGATAATTACTGC TTACTGTCTTGGGGAGGAGCTTATGTTCAGCAGTCACCAAACTAGGGTGAAAATCGTATAAATAGTCAAGGGTGACGCT TGAAATCATCAGCTTCTGCTCACTCACCAGTGGCAGAAGAACTCCTCACCAGAGGAGGATTTGCCACTCTACTGCCTTG CATTGGAGCTCCACAACATTTGGTATGTTATTGTTTCATTTCATTCTATATGGTTTTGATGCTAAAATCTATAGGGTGT GTTTTCTGGTTGGGGTTGCAAGAGAGTTGATATTTAACGGCCAGCGACAGCCTCCTTACTGCTACTGGGGTTATTCAAA AGGTTGCAAACAAAAACCTGGTTTCAGAGAAGGCAATGTGAGATTTTTGCCATGGATGCTGATGGAGCCAGAACTTTAT ACTTCATGGAATTACGTGCATTAGACAGGGGCAATAACATCATGGTATAGAGCCTAGCATATTACCAATGAACCTTTCT TCGGTTCCAGAGCTCTGATATATGTGACTCTGAACTTAGTTTTTGGGCGCTGGAGTAATTAGGAAAATTACTACTGTTT CTGAAGTCAGTGGTTTTAAGTAGGCTGCCGCCTATTTAAAATGATTATTTTTCTAAAAGTGAGACTGCCTGCCTCTTAA GCCATCTCTTATATCTTACATAGACATACAAGAACTCCAAATCTTTAGTTAGCAATGCTCATTCCATTCTCCTTACAGT ACTTTTCACAGACAGCGAAAGTAGGAAAAAGGTAACAAGATAAAGAAACTTTTCATACCAACAGGTTAAGAAAACTGAG TTATGCAAAAGACACTCATCAACTTCTACTCAATACAATGTTTTCTCCCCTTTCCAACAGAGGACGGATTTGGAAACAT GCATTTACAAATATCGTTACTGCTGCTGTTTTGTCTAAACATTGTCCATGGCAGTGATGGATACTTTTCTGAGCGATAC CAGAAACAGTCCAGCATCAAGGGGCCACCACACTTTCTACCATTCAATGTAAAGAGTCAAGGTAACGTCTACTATTTTT TTTTTTTAATAAACTAATATAAAATAAGCTTCTAGTGGGTC
Citation	Domowicz MS, Cortes M, Henry JG, Schwartz NB. Aggrecan modulation of growth plate morphogenesis. Dev Biol. 2009 May 15;329(2):242-57. Epub 2009 Mar 3.
Copyright	Copyright © 2009 Published by Elsevier Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # J04194.1).