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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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DLX6
distal-less homeobox 6

Gene

Official Symbol	DLX6
Official Full Name	distal-less homeobox 6
CGNC ID	16126
also known as	homeobox protein DLX-6\|homeodomain transcription factor DLX6
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001080890
Polypeptide	NP_001074359

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1750	ENSG00000006377		MIM:600030
Mouse
Xenopus	100216239, 443711, 779193			853183
Zebrafish	30586	ENSDARG00000042291	ZDB-GENE-980526-448	ZFIN:ZDB-GENE-980526-448

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	772070
Ensembl Gene	ENSGALG00000023195
KEGG	gga:772070

Entry 1

GEISHA Id	DLX6.Ferrari.2006	Data Source	Publication
Complete cDNA Template Probe	show GCCTTAAAAAAATAAACCCGCCGCCCCCAGCGGTGCCGCGGCGGTGGCCGGGCAGGGCGGCCGGGCGCGGGGGGCGAGC CGGAGAGCCTCGCTCTCTGCCTCCCCGCCGTCGATGATGACCATGACCACGATGGCTGACGGGTTGGACGCGCAGGACT CCTCCAAATCCGCCTTCATGGAGTTCGGGCAGCAGCAGCCGCCGCCGCAGCCGCCGCCGCCGCCCCACTCGCAGCAGAG CTCGCCGGCCATGGCCGGAGCGCACTACCCGCTGCACTGCCTGCACTCCGCCGCCGGCTCGCACCCGCACCACCAGCAC CACCACCACAGCTCGCCCTACTCCGGCACCGGCGGCTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACGTGAGCC ACTCGCAGCACAGCCCCTACCTGCAGTCCTACCACACCAGCGGCGCGCCCAGCCAGACGCGGCCGGACGACGCAGATCA GCAGAAAACGACGGTGATCGAAAACGGCGAGATCAGATTCAACGGGAAAGGGAAAAAGATCCGGAAGCCCCGAACCATT TACTCCAGCCTTCAGCTGCAGGCGTTAAACCACCGCTTCCAGCAGACTCAGTACCTGGCGCTCCCGGAGCGAGCCGAGC TGGCGGCCTCCCTCGGCCTGACCCAGACGCAGGTGAAGATCTGGTTCCAGAACAAGCGCTCCAAGTTTAAGAAGCTGCT GAAGCAGGGCAGCAACCCCCACGAGAGCGACCCTCTGCCCGGCTCCGCCGCGCTGTCCCCGCGCTCCCCGGCGCTGCCG CCCGTCTGGGACGTTTCGGCGCCTGCCAAGGGGGTCAACATGCCCCCCAACAGCTACATGCCCGGCTATTCCCACTGGT ACTCCTCTCCACACCAAGACACAATGCAGAGACCGCAGATGATGTGAACTGTCCGAGACGACCCACGGCCGGTCGGACT AACGGGCGTACAGCCGGACTGACAGCCGGACTGACGGACAGCCGGACCCGCGGAGCAGCCCGGCACCCCGCTCCTGCTG CTGGACCTCCCTCCCGAGCGACCTTTCTGTATATATTGTTGAATTTTAGCTGTACATAATACTTTGTATGGTTTGGTCT CCTTTCATATCTAGAGTAAAAGCCACCGAGCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Ferrari D, Kosher RA. Expression of Dlx5 and Dlx6 during specification of the elbow joint. Int J Dev Biol. 2006;50(8):709-13.
Copyright	© UBC Press
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001080890.1

Stage

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Location (click to highlight)

Comments (click to highlight)

25-26

stage 26

Wing

Entry 2

GEISHA Id	DLX6.Anderson.2020	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TCCGCACACAGCCCTCCCCTTCTCCTCCCCTCCCTCGGTTAACAAGGCCCCTCTCGCACTACGGGAGCCTTAAAAAAAT AAACCCGCCGCCTCCAGCGGTGCCGCGGCGGTGGCCGGGCAGGGCGGCCGGGCGCGGGGGGCGAGCCGGAGAGCCTCGC TCTCTGCCTCCCCGCCGTCGATGATGACCATGACCACGATGGCTGACGGGTTGGACGCGCAGGACTCCTCCAAATCCGC CTTCATGGAGTTCGGGCAGCAGCAGCCGCCGCCGCAGCCGCCGCCGCCGCCCCACTCGCAGCAGAGCTCGCCGGCCATG GCCGGAGCGCACTACCCGCTGCACTGCCTGCACTCCGCCGCCGGCTCGCACCCGCACCACCAGCACCACCACCACAGCT CGCCCTACTCCGGCACCGGCGGCTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACGTGAGCCACTCGCAGCACAG CCCCTACCTGCAGTCCTACCACACCAGCGGCGCGCCCAGCCAGACGCGGCCGGACGACGCAGATCAGCAGAAAACGACG GTGATCGAAAACGGCGAGATCAGATTCAACGGGAAAGGGAAAAAGATCCGGAAGCCCCGAACCATTTACTCCAGCCTTC AGCTGCAGGCGTTAAACCACCGCTTCCAGCAGACTCAGTACCTGGCGCTCCCGGAGCGAGCCGAGCTGGCGGCCTCCCT CGGCCTGACCCAGACGCAGGTGAAGATCTGGTTCCAGAACAAGCGCTCCAAGTTTAAGAAGCTGCTGAAGCAGGGCAGC AACCCCCACGAGAGCGACCCTCTGCCCGGCTCCGCCGCGCTGTCCCCGCGCTCCCCGGCGCTGCCGCCCGTCTGGGACG TTTCGGCGTCTGCCAAGGGGGTCAACATGCCCCCCAACAGCTACATGCCCGGCTATTCCCACTGGTACTCCTCTCCACA CCAAGACACAATGCAGAGACCGCAGATGATGTGAACTGTCCGAGACGACCCACGGCCCGAGGACGCCCGGCGCGGCCCG GCCCGAACGGAGCGGCGGTGCGGGGGGGGGTTCGCCTTTTGTTTGTTTCCTTTTTTTGAAGTAACCTCAGCGATCGCTC ACGGGCAGAACGAGCCACGTCCCACTGCGGCGCGGGGGAGACGCTTCTCTACGTTCGCTCGGACCGCGGGGCACCGCCG CCTCTTTCTGCGCGGAGCGCGCGGACTTTTGGCTGACTTCGCCCTCCGGAAAGACCCGAACCGCAGCGGGGCCGTCTCT CTGTGTTCCGTGAGCTGTGGACGCTGCGCGGTGAGAGACCGCTCCGAGCTCCCTCACTGTCATTCCCCGAACGCGGAAG GGGGGAAAACGTGAAACGGGGAGAGGAAAGGAGGGGTAACGAAACGAAGAGGGGGGGGGAATTAAAATAAAAAGAACTG GTTGCGAGTGAAAACGTACGGCGAGCTCGGAGCGCGGCCGCGCAGCGCGGACTGCACGCGTACGGGTAGCGGCTGCAGC CCGACGGGAGCCGCGCGGAGTGCCGCCGGGAGCCCCGCACCCTGCGAGCCCCGGCGGACCGACGGCCGGCCGGCCGGTC GGACTGACGGGCGTACAGCCGGACTGACAGCCGGACTGACGGACAGCCGGACCCGCGGAGCAGCCCGGCACCCCGCTCC TGCTGCTGGACCTCCCTCCCGAGCGACCTTTCTGTATATATTGTTGAATTTTAGCTGTACATAATACTTTGTATGGTTT GGTCTCCTTTCATATCTAGAGTAAAAGCCACCGAGCGCC
Comments	Images provided by Claire Anderson. As insufficient information was provided to verify sequence used to synthesize probe, the sequence was obtained from NCBI (accession number: XM_015281592). Related paper: Nat Commun. 2016 7:12656. doi: 10.1038/ncomms12656. A strategy to discover new organizers identifies a putative heart organizer. Anderson C, et al. PMID:27557800.

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Unlabeled

stage 3+

4-6

stage 4

stage 6

Ectoderm
Epiblast
Head Process
Headfold
Hensen's Node
Neural Plate/Tube
Primitive Streak

stage 4+
stage 6+

7-12

stage 8

stage 9

stage 10

stage 12

Anterior Neuropore
Ectoderm
Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
Notochord

9b
stage 12-
stage 8-

13-14

stage 13

stage 14

Ear/Otic Placode
Eye
Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Notochord
Pharyngeal Arches and Clefts
Tail

Entry 3

GEISHA Id	DLX6.Brown.2005	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCCTTAAAAAAATAAACCCGCCGCCCCCAGCGGTGCCGCGGCGGTGGCCGGGCAGGGCGGCCGGGCGCGGGGGGCGAGC CGGAGAGCCTCGCTCTCTGCCTCCCCGCCGTCGATGATGACCATGACCACGATGGCTGACGGGTTGGACGCGCAGGACT CCTCCAAATCCGCCTTCATGGAGTTCGGGCAGCAGCAGCCGCCGCCGCAGCCGCCGCCGCCGCCCCACTCGCAGCAGAG CTCGCCGGCCATGGCCGGAGCGCACTACCCGCTGCACTGCCTGCACTCCGCCGCCGGCTCGCACCCGCACCACCAGCAC CACCACCACAGCTCGCCCTACTCCGGCACCGGCGGCTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACGTGAGCC ACTCGCAGCACAGCCCCTACCTGCAGTCCTACCACACCAGCGGCGCGCCCAGCCAGACGCGGCCGGACGACGCAGATCA GCAGAAAACGACGGTGATCGAAAACGGCGAGATCAGATTCAACGGGAAAGGGAAAAAGATCCGGAAGCCCCGAACCATT TACTCCAGCCTTCAGCTGCAGGCGTTAAACCACCGCTTCCAGCAGACTCAGTACCTGGCGCTCCCGGAGCGAGCCGAGC TGGCGGCCTCCCTCGGCCTGACCCAGACGCAGGTGAAGATCTGGTTCCAGAACAAGCGCTCCAAGTTTAAGAAGCTGCT GAAGCAGGGCAGCAACCCCCACGAGAGCGACCCTCTGCCCGGCTCCGCCGCGCTGTCCCCGCGCTCCCCGGCGCTGCCG CCCGTCTGGGACGTTTCGGCGCCTGCCAAGGGGGTCAACATGCCCCCCAACAGCTACATGCCCGGCTATTCCCACTGGT ACTCCTCTCCACACCAAGACACAATGCAGAGACCGCAGATGATGTGAACTGTCCGAGACGACCCACGGCCGGTCGGACT AACGGGCGTACAGCCGGACTGACAGCCGGACTGACGGACAGCCGGACCCGCGGAGCAGCCCGGCACCCCGCTCCTGCTG CTGGACCTCCCTCCCGAGCGACCTTTCTGTATATATTGTTGAATTTTAGCTGTACATAATACTTTGTATGGTTTGGTCT CCTTTCATATCTAGAGTAAAAGCCACCGAGCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Stephen T Brown 1, Juemei Wang, Andrew K Groves. Dlx gene expression during chick inner ear development. J Comp Neurol. 2005 Feb 28;483(1):48-65.0
Copyright	© 2005 Wiley-Liss, Inc.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Brown et al., 2005.