GEISHA 2.0

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

	About GEISHA
	Protocols
	Contact Us

	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

Gene Expression Report

Probe 1

GEISHA Id Delta1.Rodrigues.2006

NCBI Ensembl

Gene Name DLL1 NP_990304.1

Aliases C-Delta-1|delta-like 1, DLL1, delta-like 1 (Drosophila), Official

Gene Description delta-like 1 (Drosophila) delta-like 1 [Source:RefSeq_peptide;Acc:NP_990304]

Gene Ontology

show

NCBI Nucleotide Hit

NM_204973 show details

Ensembl Genome Map contig view

Citation Rodrigues S, Santos J, Palmeirim I. Molecular characterization of the rostral-most somites in early somitic stages of the chick embryo. Gene Expr Patterns. 2006 Oct;6(7):673-7. Epub 2006 Feb 20.

Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204973).

Complete Sequence

show

ATGGGAGGCCGCTTCCTGCTGACGCTCGCCCTCCTCTCGGCGCTGCTGTGCCGCTGCCAGGTTGACGGCTCCGGGGTGT TCGAGCTGAAGCTGCAGGAGTTTGTCAACAAGAAGGGGCTGCTCAGCAACCGCAACTGCTGCCGGGGGGGCGGCCCCGG AGGCGCCGGGCAGCAGCAGTGCGACTGCAAGACCTTCTTCCGCGTCTGCCTGAAGCACTACCAGGCCAGCGTCTCCCCC GAGCCGCCCTGCACCTACGGCAGCGCCATCACCCCCGTCCTCGGCGCCAACTCCTTCAGCGTCCCCGACGGCGCGGGCG GCGCCGACCCCGCCTTCAGCAACCCCATCCGCTTCCCCTTCGGCTTCACCTGGCCCGGCACCTTCTCGCTCATCATCGA GGCTCTGCACACCGACTCCCCCGACGACCTCACCACAGAAAACCCCGAGCGCCTCATCAGCCGCCTGGCCACCCAGAGG CACCTGGCGGTGGGCGAGGAGTGGTCCCAGGACCTGCACAGCAGCGGCCGCACCGACCTCAAGTACTCCTATCGCTTTG TGTGTGATGAGCACTACTACGGGGAAGGCTGCTCTGTCTTCTGCCGGCCCCGTGACGACCGCTTCGGTCACTTCACCTG TGGAGAGCGTGGCGAGAAGGTCTGCAACCCAGGCTGGAAGGGCCAGTACTGCACTGAGCCGATTTGCTTGCCTGGGTGT GACGAGCAGCACGGCTTCTGCGACAAACCTGGGGAATGCAAGTGCAGAGTGGGTTGGCAGGGGCGGTACTGTGACGAGT GCATCCGATACCCAGGCTGCCTGCACGGTACCTGTCAGCAGCCATGGCAGTGCAACTGCCAGGAAGGCTGGGGCGGCCT TTTCTGCAACCAGGACCTGAACTACTGCACTCACCACAAGCCATGCAAGAATGGTGCCACATGCACCAACACCGGTCAG GGGAGCTACACTTGTTCTTGCCGACCTGGGTACACAGGCTCCAGCTGCGAGATTGAAATCAACGAATGTGATGCCAACC CTTGCAAGAATGGTGGAAGCTGCACGGATCTCGAGAACAGCTATTCCTGTACCTGCCCCCCAGGCTTCTATGGTAAAAA CTGTGAGCTGAGTGCAATGACTTGTGCTGATGGACCGTGCTTCAATGGAGGGCGATGCACTGACAACCCTGATGGTGGA TACAGCTGCCGCTGCCCACTGGGTTATTCTGGGTTCAACTGTGAAAAGAAAATCGATTACTGCAGTTCCAGCCCTTGTG CTAATGGAGCCCAGTGCGTTGACCTGGGGAACTCCTACATATGCCAGTGCCAGGCTGGCTTCACTGGCAGGCACTGTGA CGACAACGTGGACGATTGCGCCTCCTTCCCCTGCGTCAATGGAGGGACCTGTCAGGATGGGGTCAACGACTACTCCTGC ACCTGCCCCCCGGGATACAACGGGAAGAACTGCAGCACGCCGGTGAGCAGATGCGAGCACAACCCCTGCCACAATGGGG CCACCTGCCACGAGAGAAGCAACCGCTACGTGTGCGAGTGCGCTCGGGGCTACGGCGGCCTCAACTGCCAGTTCCTGCT CCCCGAGCCACCTCAGGGGCCGGTCATCGTTGACTTCACCGAGAAGTACACAGAGGGCCAGAACAGCCAGTTTCCCTGG ATCGCAGTGTGCGCCGGGATTATTCTGGTCCTCATGCTGCTGCTGGGTTGCGCCGCCATCGTCGTCTGCGTCAGGCTGA AGGTGCAGAAGAGGCACCACCAGCCCGAGGCCTGCAGGAGTGAAACGGAGACCATGAACAACCTGGCGAACTGCCAGCG CGAGAAGGACATCTCCATCAGCGTCATCGGTGCCACTCAGATTAAAAACACAAATAAGAAAGTAGACTTTCACAGCGAT AACTCCGATAAAAACGGCTACAAAGTTAGATACCCATCAGTGGATTACAATTTGGTGCATGAACTCAAGAATGAGGACT CTGTGAAAGAGGAGCATGGCAAATGCGAAGCCAAGTGTGAAACGTATGATTCAGAGGCAGAAGAGAAAAGCGCAGTACA GCTAAAAAGTAGTGACACTTCTGAAAGAAAACGGCCAGATTCAGTATATTCCACTTCAAAGGACACAAAGTACCAGTCG GTGTACGTCATATCAGAAGAGAAAGATGAGTGCATCATAGCAACTGAGGTGTAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-9

stage 7

stage 9

Paraxial Mesoderm

Somites

Figure 1 includes HH stages 7-9.

Presomitic Mesoderm

Probe 2

GEISHA Id	Delta1.Bardot.2004
	NCBI	Ensembl
Gene Name		NP_990304.1
Gene Description		delta-like 1 [Source:RefSeq_peptide;Acc:NP_990304]
Gene Ontology		show GO:0001756 somitogenesis ISS GO:0001757 somite specification ISS GO:0005112 Notch binding ISS GO:0005509 calcium ion binding IEA GO:0005515 protein binding ISS GO:0005886 plasma membrane ISS GO:0007154 cell communication IEA GO:0007219 Notch signaling pathway IEA GO:0007275 multicellular organismal development IEA GO:0007368 determination of left/right symmetry ISS GO:0007386 compartment specification ISS GO:0016020 membrane IEA GO:0016021 integral to membrane IEA GO:0030154 cell differentiation IEA GO:0031410 cytoplasmic vesicle ISS GO:0045596 negative regulation of cell differentiation ISS GO:0045608 negative regulation of auditory receptor cell differentiation IEA GO:0048839 inner ear development IEA
Ensembl Genome Map	contig view
Citation	Bardot B, Lecoin L, Fliniaux I, Huillard E, Marx M, Viallet JP. Drm/Gremlin, a BMP antagonist, defines the interbud region during feather development. Int J Dev Biol. 2004;48(2-3):149-56.
Copyright	"Reprinted from Int. J. Dev. Biol., 48, Bardot B, Lecoin L, Fliniaux I, Huillard E, Marx M, Viallet JP, Drm/Gremlin, a BMP antagonist, defines the interbud region during feather development, 149-56, Copyright (2004), with permission from Copyright © 2004 UBC Press". All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204973).
Complete Sequence	show ATGGGAGGCCGCTTCCTGCTGACGCTCGCCCTCCTCTCGGCGCTGCTGTGCCGCTGCCAGGTTGACGGCTCCGGGGTGT TCGAGCTGAAGCTGCAGGAGTTTGTCAACAAGAAGGGGCTGCTCAGCAACCGCAACTGCTGCCGGGGGGGCGGCCCCGG AGGCGCCGGGCAGCAGCAGTGCGACTGCAAGACCTTCTTCCGCGTCTGCCTGAAGCACTACCAGGCCAGCGTCTCCCCC GAGCCGCCCTGCACCTACGGCAGCGCCATCACCCCCGTCCTCGGCGCCAACTCCTTCAGCGTCCCCGACGGCGCGGGCG GCGCCGACCCCGCCTTCAGCAACCCCATCCGCTTCCCCTTCGGCTTCACCTGGCCCGGCACCTTCTCGCTCATCATCGA GGCTCTGCACACCGACTCCCCCGACGACCTCACCACAGAAAACCCCGAGCGCCTCATCAGCCGCCTGGCCACCCAGAGG CACCTGGCGGTGGGCGAGGAGTGGTCCCAGGACCTGCACAGCAGCGGCCGCACCGACCTCAAGTACTCCTATCGCTTTG TGTGTGATGAGCACTACTACGGGGAAGGCTGCTCTGTCTTCTGCCGGCCCCGTGACGACCGCTTCGGTCACTTCACCTG TGGAGAGCGTGGCGAGAAGGTCTGCAACCCAGGCTGGAAGGGCCAGTACTGCACTGAGCCGATTTGCTTGCCTGGGTGT GACGAGCAGCACGGCTTCTGCGACAAACCTGGGGAATGCAAGTGCAGAGTGGGTTGGCAGGGGCGGTACTGTGACGAGT GCATCCGATACCCAGGCTGCCTGCACGGTACCTGTCAGCAGCCATGGCAGTGCAACTGCCAGGAAGGCTGGGGCGGCCT TTTCTGCAACCAGGACCTGAACTACTGCACTCACCACAAGCCATGCAAGAATGGTGCCACATGCACCAACACCGGTCAG GGGAGCTACACTTGTTCTTGCCGACCTGGGTACACAGGCTCCAGCTGCGAGATTGAAATCAACGAATGTGATGCCAACC CTTGCAAGAATGGTGGAAGCTGCACGGATCTCGAGAACAGCTATTCCTGTACCTGCCCCCCAGGCTTCTATGGTAAAAA CTGTGAGCTGAGTGCAATGACTTGTGCTGATGGACCGTGCTTCAATGGAGGGCGATGCACTGACAACCCTGATGGTGGA TACAGCTGCCGCTGCCCACTGGGTTATTCTGGGTTCAACTGTGAAAAGAAAATCGATTACTGCAGTTCCAGCCCTTGTG CTAATGGAGCCCAGTGCGTTGACCTGGGGAACTCCTACATATGCCAGTGCCAGGCTGGCTTCACTGGCAGGCACTGTGA CGACAACGTGGACGATTGCGCCTCCTTCCCCTGCGTCAATGGAGGGACCTGTCAGGATGGGGTCAACGACTACTCCTGC ACCTGCCCCCCGGGATACAACGGGAAGAACTGCAGCACGCCGGTGAGCAGATGCGAGCACAACCCCTGCCACAATGGGG CCACCTGCCACGAGAGAAGCAACCGCTACGTGTGCGAGTGCGCTCGGGGCTACGGCGGCCTCAACTGCCAGTTCCTGCT CCCCGAGCCACCTCAGGGGCCGGTCATCGTTGACTTCACCGAGAAGTACACAGAGGGCCAGAACAGCCAGTTTCCCTGG ATCGCAGTGTGCGCCGGGATTATTCTGGTCCTCATGCTGCTGCTGGGTTGCGCCGCCATCGTCGTCTGCGTCAGGCTGA AGGTGCAGAAGAGGCACCACCAGCCCGAGGCCTGCAGGAGTGAAACGGAGACCATGAACAACCTGGCGAACTGCCAGCG CGAGAAGGACATCTCCATCAGCGTCATCGGTGCCACTCAGATTAAAAACACAAATAAGAAAGTAGACTTTCACAGCGAT AACTCCGATAAAAACGGCTACAAAGTTAGATACCCATCAGTGGATTACAATTTGGTGCATGAACTCAAGAATGAGGACT CTGTGAAAGAGGAGCATGGCAAATGCGAAGCCAAGTGTGAAACGTATGATTCAGAGGCAGAAGAGAAAAGCGCAGTACA GCTAAAAAGTAGTGACACTTCTGAAAGAAAACGGCCAGATTCAGTATATTCCACTTCAAAGGACACAAAGTACCAGTCG GTGTACGTCATATCAGAAGAGAAAGATGAGTGCATCATAGCAACTGAGGTGTAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 22

Feathers/Scutae

Wing

31-44

stage 44

Feathers/Scutae

Wing

Comparison with other genes

Probe 3

GEISHA Id Delta1.Kiefer.2001

NCBI Ensembl

Gene Name DLL1 NP_990304.1

Aliases C-Delta-1|delta-like 1, DLL1, delta-like 1 (Drosophila), Official

Gene Description delta-like 1 (Drosophila) delta-like 1 [Source:RefSeq_peptide;Acc:NP_990304]

Gene Ontology

show

NCBI Nucleotide Hit

NM_204973 show details

Ensembl Genome Map contig view

Citation Kiefer JC, Hauschka SD (2001). Myf-5 is transiently expressed in nonmuscle mesoderm and exhibits dynamic regional changes within the presegmented mesoderm and somites I-IV. Dev Biol. 2001 Apr 1;232(1):77-90.

Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204973).

Complete Sequence

show

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 13

Paraxial Mesoderm

Presegmented Mesoderm

Probe 4

GEISHA Id Dll1.Bothe.2006

NCBI Ensembl

Gene Name DLL1 NP_990304.1

Aliases C-Delta-1|delta-like 1, DLL1, delta-like 1 (Drosophila), Official

Gene Description delta-like 1 (Drosophila) delta-like 1 [Source:RefSeq_peptide;Acc:NP_990304]

Gene Ontology

show

NCBI Nucleotide Hit

NM_204973 show details

Ensembl Genome Map contig view

Citation Bothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.

Complete Sequence