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| CDH1 cadherin 1 | The human orthologue of this gene is associated with the following human diseases: |
Gene | Official Symbol | CDH1 | Official Full Name | cadherin 1 | CGNC ID | 377 | also known as | cadherin-1, cadherin-1|E-cadherin|L-CAM|cadherin 1, type 1, E-cadherin (epithelial)|epithelial cadherin|liver cell adhesion molecule|liver cell adhesion protein, Epithelial-cadherin precursor, E-cadherin, Cadherin-1, Liver cell adhesion molecule (L-CAM) | gene type | protein-coding |
| Genomic Map | | Sequence Information | | Gene Expression | | Orthology | | Entrez Gene | Ensembl Gene | Genetic Phenotypes | MOD | Fruit Fly | | | | | Human | 999 | ENSG00000039068 | MIM:114480 | MIM:192090 | Mouse | 12550 | ENSMUSG00000000303 | All phenotypic alleles (15):Targeted, knock-out(3) Targeted, other(12) | MGI:88354 | Xenopus | 779546, 100337618 | | | 12531593 | Zebrafish | 100330081, 791686, 100329859, 114424, 567602 | ENSDARG00000092450, ENSDARG00000024371, ENSDARG00000035796 | ZDB-GENE-110406-4, ZDB-GENE-081104-9, ZDB-GENE-010606-1, ZDB-GENE-110407-4 | ZFIN:ZDB-GENE-110406-4, ZFIN:ZDB-GENE-081104-9, ZFIN:ZDB-GENE-010606-1, ZFIN:ZDB-GENE-110407-4 |
| Gene Ontology | | Links to other databases | |
Entry 1GEISHA Id | CDH1.UApcr | Data Source | GEISHA ISH Analysis | Forward cDNA Template Primer | TTATAAAAGCTTGCGGCCGCAGAATATGGCGTCGTCTCAACAAAACG | Reverse cDNA Template Primer | GCTCTAGAAATTAACCCTCACTAAAGGGGGTCAATGGTGAACATCTGGG | cDNA Template Length | 1108 | Complete cDNA Template Probe | show TTTTTTAAAAAATTTTTGGGGCCCAAATTAGGGGTTTTTTCAAAAACGGCCACTGACGCCTTATGGGAAGGAAGATCAG CTTCACCATTACGCCACAGGATGCCATGGGCAAGAAGGCACTCAGCCCCGGGGTGACTGTGGGCAGGCACAGGCACCGC CGCCACCACCACAACCACCACCTGCAGGACACGACGCCGGCTGTGCTGACCTTCCCCAAGCACGACCCCGGCTTCCTCC GGAGGCAGAAGAGGGATTGGGTCATCCCCCCCATCAGCTGCCTCGAGAACCACCGGGGGCCCTACCCCATGAGGCTGGT GCAGATCAAATCCAACAAGGACAAGGAGTCCAAGGTGTACTACAGCATCACGGGGCAGGGCGCGGACAGCCCGCCCGTG GGCATCTTCATCATCGAGCGCGAGACGGGGTGGCTGGAGGTGACGGAGCAGCTGGACCGGGAGAAGATCGATCGCTACA CCCTCTTATCCCACGCCGTGTCGGCCAGCGGGCAGCCCGTGGAGGACCCCATGGAGATCATCATCACGGTGATGGACCA GAACGACAACAAGCCCGTGTTCATCAAGGAGGTCTTCGTCGGCTACATCGAGGAGAACGCGAAGCCAGGCACCTCCGTG ATGACCGTGAACGCCACGGATGCGGACGATGCGGTGAACACGGACAACGGCATCGTCAGCTACTCCATCGTCAGCCAGC AGCCGCCCCGCCCGCACCCCCAGATGTTCACCATTGACCCGGCCAAGGGCATCATCAGCGTGCTGGGCACGGGGCTGGA CCGGGAGACCACTCCCAACTACACACTGATCGTCCAGGCCACGGACCAGGAGGGCAAGGGTCTGTCCAACACCGCCACG GCCATCATTGAGGTCACGGATGCCAACGACAACATTCCATCTTCAACCCCACCATGTACGAAGGTGTGGTGGAAAAATA AGCCAGGTACCAGAGGTGGCCAGGCTGACCTGTGACCGGAACCAGGACCGCATCCAGGCTGCCCAGGCCCTGGCAGGCC CGTTTACCCACATCAAGAGTGGGAACCCTGGATTGGTGCCTTCAACTATTACTGACCCCGCCCTTTTTGGGTAATTTTT TTAAAAA |
Entry 2GEISHA Id | E-cadherin.Ohta.2007 | Data Source | Publication | Complete cDNA Template Probe | show AGCTCCGTGCGCAGCGGTACCCGTACCGGTACCGGCCCGGTCCCTGAGCCATGGGCCGGCGGTGGGGTTCCCCCGCCCT GCAGCGCTTCCCCGTGTTGGTGCTGCTGCTGCTGCTCCAGGTGTGCGGCCGGCGGTGCGACGAGGCAGCCCCCTGCCAG CCCGGCTTTGCTGCAGAGACCTTCAGCTTCAGTGTGCCCCAGGACAGCGTGGCGGCGGGCAGGGAGCTGGGACGAGTGA GCTTTGCAGCCTGCAGCGGGCGGCCGTGGGCCGTGTATGTCCCGACTGACACACGCTTCAAGGTGAACGGGGATGGCGT CGTCTCAACAAAACGGCCACTGACGCTCTATGGGAGGAAGATCAGCTTCACCATCTACGCACAGGATGCCATGGGCAAG AGGCACTCAGCCCGGGTGACTGTGGGCAGGCACAGGCACCGCCGCCACCACCACAACCACCACCTGCAGGACACGACGC CGGCTGTGCTGACCTTCCCCAAGCACGACCCCGGCTTCCTCCGGAGGCAGAAGAGGGATTGGGTCATCCCCCCCATCAG CTGCCTCGAGAACCACCGGGGGCCCTACCCCATGAGGCTGGTGCAGATCAAATCCAACAAGGACAAGGAGTCCAAGGTG TACTACAGCATCACGGGGCAGGGCGCGGACAGCCCGCCCGTGGGCATCTTCATCATCGAGCGCGAGACGGGGTGGCTGG AGGTGACGGAGCAGCTGGACCGGGAGAAGATCGATCGCTACACCCTCTTATCCCACGCCGTGTCGGCCAGCGGGCAGCC CGTGGAGGACCCCATGGAGATCATCATCACGGTGATGGACCAGAACGACAACAAGCCCGTGTTCATCAAGGAGGTCTTC GTCGGCTACATCGAGGAGAACGCGAAGCCAGGCACCTCCGTGATGACCGTGAACGCCACGGATGCGGACGATGCGGTGA ACACGGACAACGGCATCGTCAGCTACTCCATCGTCAGCCAGCAGCCGCCCCGCCCGCACCCCCAGATGTTCACCATTGA CCCGGCCAAGGGCATCATCAGCGTGCTGGGCACGGGGCTGGACCGGGAGACCACTCCCAACTACACACTGATCGTCCAG GCCACGGACCAGGAGGGCAAGGGTCTGTCCAACACCGCCACGGCCATCATTGAGGTCACGGATGCCAACGACAACATTC CCATCTTCAACCCCACCATGTACGAAGGTGTGGTGGAAGAGAATAAGCCAGGTACAGAGGTGGCCAGGCTGACTGTGAC GGACCAGGACGCACCAGGCTCCCCAGCCTGGCAAGCCGTTTACCACATCAAGAGTGGGAACCTGGATGGTGCCTTCAGC ATTATTACTGACCCCAGCACCAACAACGGAATCCTGAAGACAGCCAAGGGCCTGGATTATGAGACCAAGAGCCGCTACG ACCTGGTGGTGACGGTGGAGAACAAAGTGCCCCTGTCCGTGCCCATCACACTCTCCACCGCCAGCGTCCTGGTGACCGT CCTGGACGTGAATGAGCCCCCTGTCTTCGTGCCCCCTATCAAGAGGGTAGGGGTACCAGAGGACCTACCAGTGGGGCAG CAGGTTACATCCTACACGGCCCAAGACCCCGACAGGGACATGAGGCAGAAGATCACGTACCGCATGGGCAGCGACCCAG CAGGCTGGCTGTACATTCACCCCGAGAATGGCATTGTCACGGCCACCCAGCCACTGGACCGCGAGTCGGTGCACGCCAT CAACAGTACATACAAGGCCATCATCCTGGCTGTGGACAATGGGATACCGGATACCACCGGTACGGGGACGCTGCTGCTG CTCCTCCAGGATGTGAATGACAACGGGCCCACCCCAGAGCCCCGGTCCTTCGAGATCTGCAGCCGGCAGCCTGAGAAGC AGATACTGAGCATTGTGGACAAGGACCTGCCCCCACATACCTACCCCTTCAAGGCAGCACTGGAGCATGGTTCCAGCAA CAACTGGACTGTTGAGATAAGGGGCCAAGATGAGCTGGCCATGGGCCTGAAAAAGGAGCTGGAGCCGGGCGAGTACAAT ATCTTTGTGAAGCTGACGGACAGCCAGGGCAAGGCACAGGTGACGCAGGTCAAAGCCCAGGTGTGTGAGTGTGAAGGGA CAGCCAAGAACTGCGAGCGGAGGTCGTACATCGTCGGTGGGCTGGGTGTCCCCGCCATCCTGGGCATCCTGGGGGGAAT CCTGGCCCTGCTGATCCTGCTGCTGCTGCTGCTGCTCTTTGCCCGGCGACGCAAAGTGGAGAAGGAGCCGTTGCTGCCG CCCGAGGATGACATGCGGGACAACGTCTACAACTACGACGAGGAGGGCGGCGGCGAGGAGGACCAGGACTACGACCTGA GCCAGCTGCACCGCGGCCTGGACGCCCGCCCCGAGGTGATCCGCAATGATGTGGCCCCCCCGCTGATGGCCGCCCCCCA GTACCGGCCCCGGCCCGCCAACCCCGATGAGATCGGGAACTTCATCGACGAGAACCTGAAGGCAGCTGACACGGACCCC ACGGCCCCCCCCTACGACTCGCTGCTGGTGTTCGACTACGAGGGCGGCGGCTCGGAGGCCACCTCGCTCAGCTCCCTCA ACTCCTCCGCCTCCGACCAGGACCAGGACTACGACTACCTCAACGAGTGGGGCAACCGCTTCAAGAAGCTGGCGGAGCT CTATGGCGGCGGGGAGGATGATGAATAGGCAGCCTTCGTCCCCTTGGCTGGCCCGCCACGTGGCTCTTGCCATTTCACC CCCTCGGACATGCACTGGGTTTGCAGCTAAAGCCCCCTCCAACAGCGTTGGATCCACCACTCGCATCCCTCCCCTTCGG TGCAGGGAAAGCTCAGGGTCACCGGGGCTGGAGGCTTTTGGGGAGCCCACGCTTTTCCTGCCCCCTCAGCCCCACACAG GGCACAGTCCCATTCGGGCTCCTTGGGAACAGGCTGGAGGCGCGGTGCTCCTGGGTCAGCTCCCAGTGCCCCAATCCCA CAGCCCCCACAGCACGGCCGGCGCTCAGCATCTCTCCCCCTGCAAGGAAAGAGGCCCCCACCGCCTCTCTCCCTTTGCT ACAGAGGAAGGGGTTTCTCCGGCACCCTCCATAATACCTCGTGCTCCCAGCCCCGCCATCGGCGCCACGCTCAGGGTCT GGGATGGCCTTTGTGTGGAGCTGCTCGTGCGTGTGCAACACGGGTGGGCGATCGCTCCCGCACACCAACGACGTGCCAT TCCCTCTGCATGACACACCAGAGAATTATATTTGATACAGTACTCACGGGCAGATTTCTATTTTTTGTATAACAGGTGA CGATGTTATTTCCAGCTGCGTTGTTTGTAGTTATCGTTCTGTTAATGAGAGGTGCTTCCTGAAATCAAGTGGCTTTACT TAAACTCCGAACTCCGTGTCTAGCTGTTGTTTTGTATTGTTAATATGGGAAAAGGGCCTGATGCACGCTGGAAGGCCGG CGATTGCCTAAGTGTTAATTGATGGAATGATTTTTATATGAAATCAAAAGAATAAATTGTAAGAAAACC | Citation | Ohta S, Suzuki K, Tachibana K, Tanaka H, Yamada G. Cessation of gastrulation is mediated by suppression of epithelial-mesenchymal transition at the ventral ectodermal ridge. Development. 2007 Dec;134(24):4315-24. Epub 2007 Nov 14. | Copyright | Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Yamada. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001039258). |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 19-24 | | stage 24 | | Tail
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Entry 3GEISHA Id | CDH1.Hardy.2011 | Data Source | Publication | Complete cDNA Template Probe | show TTTTTTAAAAAATTTTTGGGGCCCAAATTAGGGGTTTTTTCAAAAACGGCCACTGACGCCTTATGGGAAGGAAGATCAG CTTCACCATTACGCCACAGGATGCCATGGGCAAGAAGGCACTCAGCCCCGGGGTGACTGTGGGCAGGCACAGGCACCGC CGCCACCACCACAACCACCACCTGCAGGACACGACGCCGGCTGTGCTGACCTTCCCCAAGCACGACCCCGGCTTCCTCC GGAGGCAGAAGAGGGATTGGGTCATCCCCCCCATCAGCTGCCTCGAGAACCACCGGGGGCCCTACCCCATGAGGCTGGT GCAGATCAAATCCAACAAGGACAAGGAGTCCAAGGTGTACTACAGCATCACGGGGCAGGGCGCGGACAGCCCGCCCGTG GGCATCTTCATCATCGAGCGCGAGACGGGGTGGCTGGAGGTGACGGAGCAGCTGGACCGGGAGAAGATCGATCGCTACA CCCTCTTATCCCACGCCGTGTCGGCCAGCGGGCAGCCCGTGGAGGACCCCATGGAGATCATCATCACGGTGATGGACCA GAACGACAACAAGCCCGTGTTCATCAAGGAGGTCTTCGTCGGCTACATCGAGGAGAACGCGAAGCCAGGCACCTCCGTG ATGACCGTGAACGCCACGGATGCGGACGATGCGGTGAACACGGACAACGGCATCGTCAGCTACTCCATCGTCAGCCAGC AGCCGCCCCGCCCGCACCCCCAGATGTTCACCATTGACCCGGCCAAGGGCATCATCAGCGTGCTGGGCACGGGGCTGGA CCGGGAGACCACTCCCAACTACACACTGATCGTCCAGGCCACGGACCAGGAGGGCAAGGGTCTGTCCAACACCGCCACG GCCATCATTGAGGTCACGGATGCCAACGACAACATTCCATCTTCAACCCCACCATGTACGAAGGTGTGGTGGAAAAATA AGCCAGGTACCAGAGGTGGCCAGGCTGACCTGTGACCGGAACCAGGACCGCATCCAGGCTGCCCAGGCCCTGGCAGGCC CGTTTACCCACATCAAGAGTGGGAACCCTGGATTGGTGCCTTCAACTATTACTGACCCCGCCCTTTTTGGGTAATTTTT TTAAAAA | Citation | Hardy KM, Yatskievych TA, Konieczka J, Bobbs AS, Antin PB. FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression. BMC Dev Biol. 2011 Mar 21;11:20.
| Copyright | © 2011 Hardy et al; licensee BioMed Central Ltd. | Comments | 1120 nt probe generated by pcr.
Transcribed with T3 polymerase, sequenced at UAz |
Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | 4 | | stage 4 | | stage 4 | | Epiblast Primitive Streak
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Entry 4GEISHA Id | E-CADHERIN.Dady.2012 | Data Source | Publication | Complete cDNA Template Probe | show AGCTCCGTGCGCAGCGGTACCCGTACCGGTACCGGCCCGGTCCCTGAGCCATGGGCCGGCGGTGGGGTTCCCCCGCCCT GCAGCGCTTCCCCGTGTTGGTGCTGCTGCTGCTGCTCCAGGTGTGCGGCCGGCGGTGCGACGAGGCAGCCCCCTGCCAG CCCGGCTTTGCTGCAGAGACCTTCAGCTTCAGTGTGCCCCAGGACAGCGTGGCGGCGGGCAGGGAGCTGGGACGAGTGA GCTTTGCAGCCTGCAGCGGGCGGCCGTGGGCCGTGTATGTCCCGACTGACACACGCTTCAAGGTGAACGGGGATGGCGT CGTCTCAACAAAACGGCCACTGACGCTCTATGGGAGGAAGATCAGCTTCACCATCTACGCACAGGATGCCATGGGCAAG AGGCACTCAGCCCGGGTGACTGTGGGCAGGCACAGGCACCGCCGCCACCACCACAACCACCACCTGCAGGACACGACGC CGGCTGTGCTGACCTTCCCCAAGCACGACCCCGGCTTCCTCCGGAGGCAGAAGAGGGATTGGGTCATCCCCCCCATCAG CTGCCTCGAGAACCACCGGGGGCCCTACCCCATGAGGCTGGTGCAGATCAAATCCAACAAGGACAAGGAGTCCAAGGTG TACTACAGCATCACGGGGCAGGGCGCGGACAGCCCGCCCGTGGGCATCTTCATCATCGAGCGCGAGACGGGGTGGCTGG AGGTGACGGAGCAGCTGGACCGGGAGAAGATCGATCGCTACACCCTCTTATCCCACGCCGTGTCGGCCAGCGGGCAGCC CGTGGAGGACCCCATGGAGATCATCATCACGGTGATGGACCAGAACGACAACAAGCCCGTGTTCATCAAGGAGGTCTTC GTCGGCTACATCGAGGAGAACGCGAAGCCAGGCACCTCCGTGATGACCGTGAACGCCACGGATGCGGACGATGCGGTGA ACACGGACAACGGCATCGTCAGCTACTCCATCGTCAGCCAGCAGCCGCCCCGCCCGCACCCCCAGATGTTCACCATTGA CCCGGCCAAGGGCATCATCAGCGTGCTGGGCACGGGGCTGGACCGGGAGACCACTCCCAACTACACACTGATCGTCCAG GCCACGGACCAGGAGGGCAAGGGTCTGTCCAACACCGCCACGGCCATCATTGAGGTCACGGATGCCAACGACAACATTC CCATCTTCAACCCCACCATGTACGAAGGTGTGGTGGAAGAGAATAAGCCAGGTACAGAGGTGGCCAGGCTGACTGTGAC GGACCAGGACGCACCAGGCTCCCCAGCCTGGCAAGCCGTTTACCACATCAAGAGTGGGAACCTGGATGGTGCCTTCAGC ATTATTACTGACCCCAGCACCAACAACGGAATCCTGAAGACAGCCAAGGGCCTGGATTATGAGACCAAGAGCCGCTACG ACCTGGTGGTGACGGTGGAGAACAAAGTGCCCCTGTCCGTGCCCATCACACTCTCCACCGCCAGCGTCCTGGTGACCGT CCTGGACGTGAATGAGCCCCCTGTCTTCGTGCCCCCTATCAAGAGGGTAGGGGTACCAGAGGACCTACCAGTGGGGCAG CAGGTTACATCCTACACGGCCCAAGACCCCGACAGGGACATGAGGCAGAAGATCACGTACCGCATGGGCAGCGACCCAG CAGGCTGGCTGTACATTCACCCCGAGAATGGCATTGTCACGGCCACCCAGCCACTGGACCGCGAGTCGGTGCACGCCAT CAACAGTACATACAAGGCCATCATCCTGGCTGTGGACAATGGGATACCGGATACCACCGGTACGGGGACGCTGCTGCTG CTCCTCCAGGATGTGAATGACAACGGGCCCACCCCAGAGCCCCGGTCCTTCGAGATCTGCAGCCGGCAGCCTGAGAAGC AGATACTGAGCATTGTGGACAAGGACCTGCCCCCACATACCTACCCCTTCAAGGCAGCACTGGAGCATGGTTCCAGCAA CAACTGGACTGTTGAGATAAGGGGCCAAGATGAGCTGGCCATGGGCCTGAAAAAGGAGCTGGAGCCGGGCGAGTACAAT ATCTTTGTGAAGCTGACGGACAGCCAGGGCAAGGCACAGGTGACGCAGGTCAAAGCCCAGGTGTGTGAGTGTGAAGGGA CAGCCAAGAACTGCGAGCGGAGGTCGTACATCGTCGGTGGGCTGGGTGTCCCCGCCATCCTGGGCATCCTGGGGGGAAT CCTGGCCCTGCTGATCCTGCTGCTGCTGCTGCTGCTCTTTGCCCGGCGACGCAAAGTGGAGAAGGAGCCGTTGCTGCCG CCCGAGGATGACATGCGGGACAACGTCTACAACTACGACGAGGAGGGCGGCGGCGAGGAGGACCAGGACTACGACCTGA GCCAGCTGCACCGCGGCCTGGACGCCCGCCCCGAGGTGATCCGCAATGATGTGGCCCCCCCGCTGATGGCCGCCCCCCA GTACCGGCCCCGGCCCGCCAACCCCGATGAGATCGGGAACTTCATCGACGAGAACCTGAAGGCAGCTGACACGGACCCC ACGGCCCCCCCCTACGACTCGCTGCTGGTGTTCGACTACGAGGGCGGCGGCTCGGAGGCCACCTCGCTCAGCTCCCTCA ACTCCTCCGCCTCCGACCAGGACCAGGACTACGACTACCTCAACGAGTGGGGCAACCGCTTCAAGAAGCTGGCGGAGCT CTATGGCGGCGGGGAGGATGATGAATAGGCAGCCTTCGTCCCCTTGGCTGGCCCGCCACGTGGCTCTTGCCATTTCACC CCCTCGGACATGCACTGGGTTTGCAGCTAAAGCCCCCTCCAACAGCGTTGGATCCACCACTCGCATCCCTCCCCTTCGG TGCAGGGAAAGCTCAGGGTCACCGGGGCTGGAGGCTTTTGGGGAGCCCACGCTTTTCCTGCCCCCTCAGCCCCACACAG GGCACAGTCCCATTCGGGCTCCTTGGGAACAGGCTGGAGGCGCGGTGCTCCTGGGTCAGCTCCCAGTGCCCCAATCCCA CAGCCCCCACAGCACGGCCGGCGCTCAGCATCTCTCCCCCTGCAAGGAAAGAGGCCCCCACCGCCTCTCTCCCTTTGCT ACAGAGGAAGGGGTTTCTCCGGCACCCTCCATAATACCTCGTGCTCCCAGCCCCGCCATCGGCGCCACGCTCAGGGTCT GGGATGGCCTTTGTGTGGAGCTGCTCGTGCGTGTGCAACACGGGTGGGCGATCGCTCCCGCACACCAACGACGTGCCAT TCCCTCTGCATGACACACCAGAGAATTATATTTGATACAGTACTCACGGGCAGATTTCTATTTTTTGTATAACAGGTGA CGATGTTATTTCCAGCTGCGTTGTTTGTAGTTATCGTTCTGTTAATGAGAGGTGCTTCCTGAAATCAAGTGGCTTTACT TAAACTCCGAACTCCGTGTCTAGCTGTTGTTTTGTATTGTTAATATGGGAAAAGGGCCTGATGCACGCTGGAAGGCCGG CGATTGCCTAAGTGTTAATTGATGGAATGATTTTTATATGAAATCAAAAGAATAAATTGTAAGAAAACC | Citation | Dady A, Blavet C, Duband JL Timing and kinetics of E- to N-cadherin switch during neurulation in the avian embryo DEVELOPMENTAL DYNAMICS. Volume 241, Issue 8, August 2012, Pages: 13331349. | Copyright | Copyright © 2012 Wiley-Liss, Inc. | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Acc. # NM_001039258.1). |
| Data from NCBI Unigene EST Profile Unigene ID: Gga.2982 |
MouseFrogFruit FlyZebra FinchZebrafish
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