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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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EBF2
early B cell factor 2

Gene

Official Symbol	EBF2
Official Full Name	early B cell factor 2
CGNC ID	49200
also known as	transcription factor COE2, EBF2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001164536
Polypeptide	NP_001158008

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	45318			FBgn0001319
Human	64641	ENSG00000221818		MIM:609934
Mouse	13592	ENSMUSG00000022053	All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4)	MGI:894332
Xenopus	394808, 373695, 373696			971135
Zebrafish	30692	ENSDARG00000042525	ZDB-GENE-990715-11	ZFIN:ZDB-GENE-990715-11

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395176
Ensembl Gene	ENSGALG00000000242
KEGG	gga:395176

Entry 1

GEISHA Id	pgm2n.pk014.g12	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CCCTCCGTAGCTCCGTTCCTTCTTTTCTTCCCCAAATCATCCCGAGCCTTTTTTTTTTCTTCCCTACCGGATCAGGCAG CGATCAACCCCTTCTCTCAGTGTCCTTCTCGAAGCAGGTGATCCTTGTTAACGGCCGTCGGTTTCTGGATGCGGTTCCC TGCGTTTGGAAGATGACGATACCGGGAGAGACCGAATCGGCGTAACTCACTTTGCGAGAGGAGAAACTTCTCCCCCTCC CCTCCCCCCCCATTTGAAGGCACTCAAACACACGTAGCACTTAAAGCTGAAGTTGGTTTCAAAGCTGAAGTTCTCCACT TTCCCGGGATTTGTGTGTGTCAATTTCCAGAAGCTGCAGATTTGTTCTTTTCCTCCTCCCTGATTCCCCCCCCCCCGAA GGAAACTGTTGCTATTTGGAATAGACTTCTTAAATGTTTGGGATCCAAGATACTTTGGGAAGAGGACCGGTTCTGAAAG ACAAATCTCTGGGTTCTGAGATGGATTCCGTCAGGTCCTGGGTCAGAAACGTTGGGGTTGTGGATGCAAATGTAGCAGC ACAAAGCGGCGTAGCTCTGTCCAGAGCTCACTTTGAAAAGCAGCCACCCTCCAACTTGAGGAAATCCAATTTCTTTCAC TTCGTTCTGGCGCTCTACGACAGACAAGGGCAGCCCGTGGAAATAGAGAGGACGGCTTTTGTGGACTTTGTAGAAAACG ATAAAGAGCAAGGCAACGAAAAGACCAACAACGGCACGCATTACAAACTGCAGCTCCTGTATAGCAACGGTGTCAGGAC TGAACAGGATCTGTATGTCAGACTCAATGATTCCGTCCCAAGCAGCCCATAACTTA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Area Pellucida
Early Mesoderm
Neural Plate/Tube
Paraxial Mesoderm

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

stage 12

Head Mesenchyme
Neural Crest
Neural Plate/Tube
Paraxial Mesoderm
Somites
Trunk Mesenchyme

Dorsal
Ventral

13-18

stage 15

stage 17

stage 18

Head Mesenchyme
Lateral Plate Mesoderm
Neural Crest
Pharyngeal Arches and Clefts
Tail
Trunk Mesenchyme

19-24

stage 20

stage 21

stage 24

Cranial Ganglion
Head Mesenchyme
Nasal Placcode/Nerve
Neural Crest
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Tail
Trunk Mesenchyme

stage 25

Dermatome
Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Leg Mesenchyme
Leg Muscles
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somites
Spinal Cord
Spinal Ganglia and Nerves
Tail
Trunk Mesenchyme
Wing Mesenchyme
Wing Muscles

Entry 2

GEISHA Id	EBF2.Mella.2004	Data Source	Publication
Complete cDNA Template Probe	show `GTCAGGACTGAACAGGATCTGTATGTCAGACTCATTGATTCCGTCACCAAGCAGCCCATAACTTATGAAGGACAGAACA AGAATCCTGAGATGTGCAGAGTGCTGCTCACTCATGAAGTCATGTGCAGTCGGTGCTGCGAGAAGAAGAGTTGTGGCAA CAGAAACGAGACTCCATCGGACCCCGTGATCATCGACAGATTCTTCTTAAAATTTTTTCTCAAGTGCAATCAGAATTGT TTGAAAACAGCAGGAAACCCCCGAGATATGAGGCGGTTCCAGGTTGTGCTATCCACAACAGTGAATGTTGATGGGCACG TGCTGGCAGTGTCTGACAACATGTTCGTCCACAATAACCGCGGGG`
Citation	Mella S, Soula C, Morello D, Crozatier M, Vincent A. Expression patterns of the coe/ebf transcription factor genes during chicken and mouse limb development. Gene Expr Patterns. 2004 Sep;4(5):537-42.
Copyright	Reprinted with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AY491057). Accession given in paper.