GEISHA - A Chicken Embryo Gene Expression Database
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EBF2
early B cell factor 2

Gene
Official SymbolEBF2
Official Full Nameearly B cell factor 2
CGNC ID49200
also known astranscription factor COE2, EBF2
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001164536
PolypeptideNP_001158008
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.9484
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly45318FBgn0001319
Human64641ENSG00000221818MIM:609934
Mouse13592ENSMUSG00000022053All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4) MGI:894332
Xenopus394808, 373695, 373696971135
Zebrafish30692ENSDARG00000042525ZDB-GENE-990715-11ZFIN:ZDB-GENE-990715-11
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395176
Ensembl GeneENSGALG00000000242
KEGGgga:395176

Entry 1

GEISHA Idpgm2n.pk014.g12Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CCCTCCGTAGCTCCGTTCCTTCTTTTCTTCCCCAAATCATCCCGAGCCTTTTTTTTTTCTTCCCTACCGGATCAGGCAG
CGATCAACCCCTTCTCTCAGTGTCCTTCTCGAAGCAGGTGATCCTTGTTAACGGCCGTCGGTTTCTGGATGCGGTTCCC
TGCGTTTGGAAGATGACGATACCGGGAGAGACCGAATCGGCGTAACTCACTTTGCGAGAGGAGAAACTTCTCCCCCTCC
CCTCCCCCCCCATTTGAAGGCACTCAAACACACGTAGCACTTAAAGCTGAAGTTGGTTTCAAAGCTGAAGTTCTCCACT
TTCCCGGGATTTGTGTGTGTCAATTTCCAGAAGCTGCAGATTTGTTCTTTTCCTCCTCCCTGATTCCCCCCCCCCCGAA
GGAAACTGTTGCTATTTGGAATAGACTTCTTAAATGTTTGGGATCCAAGATACTTTGGGAAGAGGACCGGTTCTGAAAG
ACAAATCTCTGGGTTCTGAGATGGATTCCGTCAGGTCCTGGGTCAGAAACGTTGGGGTTGTGGATGCAAATGTAGCAGC
ACAAAGCGGCGTAGCTCTGTCCAGAGCTCACTTTGAAAAGCAGCCACCCTCCAACTTGAGGAAATCCAATTTCTTTCAC
TTCGTTCTGGCGCTCTACGACAGACAAGGGCAGCCCGTGGAAATAGAGAGGACGGCTTTTGTGGACTTTGTAGAAAACG
ATAAAGAGCAAGGCAACGAAAAGACCAACAACGGCACGCATTACAAACTGCAGCTCCTGTATAGCAACGGTGTCAGGAC
TGAACAGGATCTGTATGTCAGACTCAATGATTCCGTCCCAAGCAGCCCATAACTTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Area Pellucida
Early Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
 
7-12
stage 7
stage 8
stage 9
stage 9
stage 10
stage 11
stage 12
Head Mesenchyme
Neural Crest
Neural Plate/Tube
Paraxial Mesoderm
Somites
Trunk Mesenchyme
Dorsal
Ventral
13-18
stage 15
stage 17
stage 17
stage 18
Head Mesenchyme
Lateral Plate Mesoderm
Neural Crest
Pharyngeal Arches and Clefts
Tail
Trunk Mesenchyme
 
19-24
stage 20
stage 21
stage 24
Cranial Ganglion
Head Mesenchyme
Nasal Placcode/Nerve
Neural Crest
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Tail
Trunk Mesenchyme
 
25
stage 25
stage 25
stage 25
stage 25
stage 25
Dermatome
Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Leg Mesenchyme
Leg Muscles
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somites
Spinal Cord
Spinal Ganglia and Nerves
Tail
Trunk Mesenchyme
Wing Mesenchyme
Wing Muscles
 

Entry 2

GEISHA IdEBF2.Mella.2004Data SourcePublication
Complete cDNA Template Probeshow
GTCAGGACTGAACAGGATCTGTATGTCAGACTCATTGATTCCGTCACCAAGCAGCCCATAACTTATGAAGGACAGAACA
AGAATCCTGAGATGTGCAGAGTGCTGCTCACTCATGAAGTCATGTGCAGTCGGTGCTGCGAGAAGAAGAGTTGTGGCAA
CAGAAACGAGACTCCATCGGACCCCGTGATCATCGACAGATTCTTCTTAAAATTTTTTCTCAAGTGCAATCAGAATTGT
TTGAAAACAGCAGGAAACCCCCGAGATATGAGGCGGTTCCAGGTTGTGCTATCCACAACAGTGAATGTTGATGGGCACG
TGCTGGCAGTGTCTGACAACATGTTCGTCCACAATAACCGCGGGG
CitationMella S, Soula C, Morello D, Crozatier M, Vincent A. Expression patterns of the coe/ebf transcription factor genes during chicken and mouse limb development. Gene Expr Patterns. 2004 Sep;4(5):537-42.
CopyrightReprinted with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AY491057). Accession given in paper.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 29
stage 29
Leg Mesenchyme
Autopod
Figure 3 compares the expression patterns of ebf1-3 and scx in hindlimb of E6 (HH stage 29) chicken embryos.
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.9484

Mouse

EmageMGI:894332
EurexpressMGI:894332
MGI GXDMGI:894332

Frog

Xenbase971135

Fruit Fly

BDGPFBgn0001319

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990715-11
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