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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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EPHB6
EPH receptor B6

Gene

Official Symbol	EPHB6
Official Full Name	EPH receptor B6
CGNC ID	50733
also known as	CEK9, EPHB5, ephrin type-B receptor 5\|Chicken embryo kinase 9\|EK9\|EPH-like kinase 9
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001004387
Polypeptide	NP_001004387
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.633

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2051	ENSG00000106123		MIM:602757
Mouse	13848	ENSMUSG00000029869	All phenotypic alleles (7):Targeted, knock-out(4) Targeted, other(3)	MGI:1096338
Xenopus
Zebrafish	572411	ENSDARG00000057729	ZDB-GENE-100922-51	ZFIN:ZDB-GENE-100922-51

Gene Ontology

Molecular Function	ATP binding, ephrin receptor activity
Biological Process
Cellular Component	integral component of plasma membrane

Links to other databases

Entrez Gene	418308
Ensembl Gene
KEGG	gga:418308

Entry 1

GEISHA Id	EPHB6.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CACAGGACCGACTGCCACTTATTG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGCTGGAGGAGGTGAACTTGCGATAC	cDNA Template Length	805
Forward cDNA Template Probe	show AATATATGCGCATCTTGNGTAAGCTTCTCGGGGGCAGTTCCACCGGAATGGGCAATTTTGCAACCCTAAGCTCCAGTAT CCCTTGGATTTGAAGCATCATCTTCCAGAAAGCGAGACAAACCAATAGTCTGACACGCTTGCATACAAGGTTACTGTTG ACTAAAATGTTACGTGCTGCGAGATCACGATGCACATAGTTCATGTCTGAAAGGTAGCGCATGCCTGCTGCAATCCCTC GTAGCATTCCCACCCGCTGTAACACACTGAACTGTCCCTCCTTCTGCCTGAGGAAGGAATCCAGTGATCCATTCTCCAT GAATTCTGTGACCATCATGACTGGTCCGCTTTTGGTGACCCCCCCCTCCATGTGGATGACATTGGGATGCTCAAATTGC CCCATGATGCTGGCCTCTCTCACGAACTCTCGACGCTGTTCATCAGTATAACCCGACCTCAGGGTTTTAATAACTACTG TGGATTCACGTTTTCCTGGGTGTTTTAGGCGCCCAAAGCACACCTCTCCAAATTCTCCTGCATCAAAGACCTCCTCAAT TTTGAAGAAGGACACATCTATCTCTTTGGCAAACCTCCAATAGCTCCTTGGGATCTTCCTACGTGGAAGGATCAATGTA ATACTTCCCTCCCACGCCTCCCGTACTGATATACTGCCCCACGCCGGGCAAATATTGGATTCCCCTCCCCTTTTACTCT TGCACAGGAGGGCAAAAATGGCAATGGTGGGAATTTCCCCCACTGCCCTACCACGCGGTTTAAAAACTCCCCTCTTGTG GGGTGGGGTCCCTGTGAAAAAAAAATCCTTCNTCTTCCCGACC

Stage

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1-3

stage 3

Area Pellucida

4-6

stage 4

stage 5

stage 6

Area Pellucida
Headfold
Hensen's Node
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak

7-12

stage 7

stage 11

stage 12

Extraembryonic Mesoderm
Forebrain
Headfold
Hensen's Node
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

Under-stained.

13-18

stage 13

stage 14

stage 17

Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Somatic Mesoderm
Spinal Cord

19-24

stage 21

stage 22

Forebrain
Hindbrain
Midbrain
Pharyngeal Arches and Clefts
Spinal Cord

stage 25

Forebrain
Hindbrain
Leg Ectoderm
Midbrain
Midgut
Pharyngeal Arches and Clefts
Somatic Mesoderm
Wing Ectoderm

Entry 2

GEISHA Id	EPHB5.Santiago.2002	Data Source	Publication
Complete cDNA Template Probe	show CGGCTCTGACTTTGTGTTAACGGTTTATGGACTGGTTCCAAAGAGCTCAAAGGTACCAAAACACTCCAAGCAACCTCTG AACCATTCAAGCAAGTAGTGTGTGTTTATTGGATATGGTGGAGTCTACAGAGAATCTTCATGGATTCTAATGCTGACAT CAGTGCAAGAAGAGTGTCAGGAATGGATTGGCTCTGGCTGGTTTGCTTCTTTCATCTAGTCACTTCACTAGAAGAAATA CTTCTGGATACAACTGGAGAAACCTCAGAGATTGGCTGGACCTCTCACCCTCCTGATGGGTGGGAAGAAGTAAGTGTCC GGGATGATAAGGAGCGCCAGATCCGAACCTTTCAAGTTTGTAACATGGATGAACCAGGTCAGAATAACTGGTTGCGTAC TCACTTCATAGAGCGACGTGGAGCCCACCGAGTCCATGTCCGCCTTCATTTCTCAGTGAGGGACTGTGCCAGCATGCGT ACTGTGGCCTCTACTTGCAAAGAGACTTTCACACTCTACTACCACCAGTCAGATGTCGACATAGCCTCTCAGGAACTGC CAGAGTGGCATGAAGGCCCCTGGACCAAGGTGGATACTATTGCAGCTGATGAAAGCTTTTCCCAGGTGGACAGAACTGG GAAGGTGGTAAGGATGAATGTTAAAGTACGCAGCTTTGGGCCACTCACAAAGCATGGCTTCTACCTGGCCTTCCAGGAC TCAGGAGCCTGTATGTCCCTGGTGGCAGTCCAAGTCTTTTTCTACAAGTGTCCAGCTGTGGTGAAAGGATTTGCCTCCT TCCCTGAAACTTTTGCTGGAGGAGAGAGGACCTCACTGGTGGAGTCACTAGGGACGTGTGTAGCAAATGCTGAAGAGGC AAGCACAACTGGGTCATCAGGTGTTCGGTTGCACTGCAATGGAGAAGGAGAGTGGATGGTGGCCACTGGACGATGCTCT TGCAAGGCTGGTTACCAATCTGTTGACAATGAGCAAGCTTGTCAAGCTTGTCCCATTGGTTCCTTTAAAGCATCTGTGG GAGATGACCCTTGCCTTCTCTGCCCTGCCCACAGCCATGCTCCACTGCCACTGCCAGGTTCCATTGAATGTGTGTGTCA GAGTCACTACTACCGATCTGCTTCTGACAATTCTGATGCTCCCTGCACTGGCATCCCCTCTGCTCCCCGTGACCTCAGT TATGAAATTGTTGGCTCCAACGTGCTCCTGACCTGGCGCCTCCCCAAGGACTTGGGTGGCCGCAAGGATGTCTTCTTCA ATGTCATCTGCAAGGAATGCCCAACAAGGTCAGCAGGGACATGTGTGCGCTGTGGGGACAATGTACAGTTTGAACCACG CCAAGTGGGCCTGACAGAAAGTCGTGTTCAAGTCTCCAACCTATTGGCCCGTGTGCAGTACACTTTTGAGATCCAGGCT GTCAATTTGGTGACTGAGTTGAGTTCAGAAGCACCCCAGTATGCTACCATCAACGTTAGCACCAGCCAGTCAGTGCCCT CCGCAATCCCTATGATGCATCAGGTGAGTCGTGCTACCAGTAGCATCACACTGTCTTGGCCTCAGCCAGACCAGCCCAA TGGGGTTATCCTGGATTACCAGCTACGGTACTTTGACAAGGCAGAAGATGAGGATAATTCATTTACTTTGACTAGTGAA ACTAACATGGCCACTATATTAAATCTGAGTCCAGGCAAGATCTATGTCTTCCAAGTACGAGCTAGAACAGCAGTGGGTT ATGGCCCATACAGTGGAAAGATGTATTTCCAGACTTTAATGGCAGGAGAGCACTCGGAGATGGCACAGGACCGACTGCC ACTTATTGTGGGCTCAGCACTTGGTGGTCTGGCATTCTTGGTAATTGCTGCCATTGCCATTCTTGCCATCATCTTCAAG AGTAAAAGGCGAGAGACTCCATACACAGACCGCCTGCAGCAGTATATCAGTACACGAGGACTTGGAGTGAAGTATTACA TTGATCCTTCCACGTATGAAGATCCCAATGAAGCTATTCGAGAGTTTGCCAAAGAGATAGATGTGTCCTTCATCAAAAT TGAGGAGGTCATTGGATCAGGAGAATTTGGAGAGGTGTGCTTTGGGCGCCTAAAACACCCAGGGAAACGTGAATACACA GTAGCTATTAAAACCCTGAAGTCAGGTTATACTGATGAACAGCGTCGAGAGTTCCTGAGCGAGGCCAGCATCATGGGGC AATTTGAGCATCCCAATGTCATCCACCTGGAGGGCGTGGTCACCAAAAGCCGACCAGTCATGATTGTCACAGAATTCAT GGAGAATGGATCACTGGATTCCTTCCTCAGGCAGAAGGAGGGACAGTTCAGTGTGTTACAGCTGGTGGGAATGCTACGA GGGATTGCAGCAGGCATGCGCTACCTTTCAGACATGAACTATGTGCATCGTGATCTCGCAGCACGTAACATCTTAGTCA ACAGTAACCTTGTATGCAAGGTGTCAGACTTTGGTTTGTCTCGCTTTCTGGAAGATGATGCTTCAAATCCCACTTATAC TGGAGCTCTGGGTTGCAAAATCCCCATCCGTTGGACTGCCCCTGAAGCTGTCCAGTATCGCAAGTTCACCTCCTCCAGT GATGTCTGGAGCTATGGCATTGTCATGTGGGAGGTGATGTCCTATGGTGAGAGACCTTACTGGGACATGTCCAACCAGG ATGTAATTAATGCCATTGACCAGGACTATCGCCTGCCACCACCCCCAGACTGCCCAACTGTTTTGCATCTGCTGATGCT TGACTGCTGGCAGAAGGATCGAGTCCAGAGACCAAAATTTGAACAAATAGTCAGTGCCCTAGATAAAATGATCCGCAAG CCATCTGCTCTCAAAGCCACTGGCACTGGGAGCAGCAGACCATCTCAGCCTCTCCTGAGCAACTCCCCTCCAGATTTTC CTTCACTCAGCAATGCCCACGAGTGGTTGGATGCCATCAAGATGGGTCGTTACAAGGAGAATTTTGACCAGGCTGGTCT GATTACATTTGATGTCATATCACGCATGACTCTGGAAGATCTCCAGCGTATTGGAATCACCCTGGTTGGTCACCAGAAA AAGATTCTAAACAGCATCCAGCTCATGAAAGTTCATTTGAACCAGCTTGAACCAGTTGAAGTGTGATGCTTTAAGTCTC TATTTCACCAGACTCAAATTCTGAAAGAGTCCTGAGGGGATTCAGAGGGATTGTCACTGTATGAAAAGGAAATGGCAAG ATGCTCCTTGAAGACTTACTGCACCTAGAGAGTAGACATTACACATTCCATTCCACCAGCAAAAAGAGAATCTTGCCAT CATTTAAAAGCAGAGTTAAATAGCTGGTGGTTAAATATGACTGGCATCATACACTAGGAGTAGGTCAGGGAGGGAAAGT TATAGTAATGCAGAGTGGAGCTGGTATAATAGTTTGGACAGACCACAAGCACCTGCTAGCTCTTCTCCACTAAATAAAA AATCAGACAATTCTCCAGTGCCATCAGCAGGCTTTATCTGTGACTGGGAACAAAGAAATCACAATTTTTCCAAGAGAGT ATCAGCACATTGTGAGAGTTATCACTCAGTTGGAAATGGACATCACTTGCTATGCCAGATTTGTGAGAAACTGGAGTTC CACTGAGTGCACCATATGTGGTAAACAATAAGGTACATCACCTCGTAATTTTTACAGAGGTTGAGAGTAAAGGGCCCA
Citation	Santiago A, Ericsson CA. Ephrin-B ligands play a dual role in the control of neural crest cell migration. 2002 Aug;129(15):3621-32
Copyright	Great Britain © The Company of Biologists Limited 2002
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Acc. # U23783.1). Also known as: CEK9