GEISHA - A Chicken Embryo Gene Expression Database
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EFNB2
ephrin B2

Gene
Official SymbolEFNB2
Official Full Nameephrin B2
CGNC ID49409
also known asephrin-B2, ephrin-B2
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204824
PolypeptideNP_990155
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.357
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1948ENSG00000125266MIM:600527
Mouse13642ENSMUSG00000001300All phenotypic alleles (17):Targeted, knock-out(2) Targeted, other(15) MGI:105097
Xenopus100101723, 100141484, 379645488605
Zebrafish30219, 114402ENSDARG00000003783ZDB-GENE-990415-67, ZDB-GENE-010618-1ZFIN:ZDB-GENE-990415-67, ZFIN:ZDB-GENE-010618-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395625
Ensembl Gene
KEGGgga:395625

Entry 1

GEISHA IdEphrinB2.UAlinearData SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 2
  
4-6
stage 4
stage 4
stage 4
stage 5
stage 6
Early Mesoderm
Lateral Plate Mesoderm
Primitive Streak
HH 5+
7-12
stage 7
stage 8
stage 10
stage 11
Forebrain
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Rhombomeres
Somites
 
13-18
stage 13
stage 14
stage 15
stage 16
Extraembryonic
Eye
Head Mesenchyme
Neural Crest
Neural Plate/Tube
Somites
Surface Ectoderm
Sections pending.
19-24
stage 20
stage 22
Eye
Forebrain
Head Mesenchyme
Lateral Plate Mesoderm
Leg
Limb Buds
Nasal Placode/Nerve
Wing
Sections pending.
25
stage 25
stage 25
Eye
Forebrain
Head Mesenchyme
Leg
Midbrain
Spinal Cord
Wing
Sections pending.

Entry 2

GEISHA IdEphrinB2.Baker.2003Data SourcePublication
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationBaker RK, Antin PB. Ephs and ephrins during early stages of chick embryogenesis Dev Dyn. 2003 Sep;228(1):128-42.
Copyright2003 Wiley-Liss, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 4
stage 4
stage 5
Lateral Plate Mesoderm
Mesoderm, early
Primitive Streak
 
7-12
stage 7
stage 7
stage 8
stage 8
stage 9
stage 9
stage 10
stage 11
stage 11
stage 12
stage 12
Aorta
Arteries
Blood Vessels
Dermatome
Diencephalon
Ear/Otic Placcode
Endoderm, early
Eye
Forebrain
Hindbrain
Lateral Plate Mesoderm
Mesoderm, early
Midbrain
Neural Crest
Neural Plate/Tube
Notochord
Primitive Streak
Somatopleure
Somites
Splanchnic Mesoderm
Tail
Telencephalon
Veins
vitelline artery vascular plexus

Entry 3

GEISHA Idephrin-B2.Mühleisen.2006Data SourcePublication
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationMühleisen TW, Agoston Z, Schulte D. Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intraretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vivo. Dev Biol. 2006 Sep 1;297(1):59-73.
CopyrightReprinted from Developmental Biology, Volume 297, Thomas W. Mühleisen, Zsuzsa Agoston and Dorothea Schulte, Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intaretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vitro, Pages 56-73, Copyright 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "The cDNA clones used to generate in situ probes for EphA3, EphA4, ephrin-A5, ephrin-A2, EphB2, EphB3, ephrin-B1, ephrin-B2 or RCS, which recognizes a viral core protein, were described elsewhere (Schulte et al., 1999) or were gifts from J. Flanagan, C. Cepko (Harvard Medical School, Boston), or E. Pasquale (The Burnham Institute, La Jolla, California; Holash and Pasquale, 1995 and Cheng et al., 1995). As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204824)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 15
Eye
Retina
eye cup and neural retina
19-20
stage 20
stage 20
Eye
Retina
eye cup and neural retina

Entry 4

GEISHA IdEPHRIN-B2.Peters.2002Data SourcePublication
Reverse cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationPeters MA, Cepko CL (2002). The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments. Dev Biol. 2002 Nov 1;251(1):59-73.
Copyright"Reprinted from Developmental Biology, 251(1), Peters MA, Cepko CL, The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments, 59-73, Copyright (2002), with permission from Elsevier". Copyright © ( 2002) Elsevier B.V. All rights reserved.
CommentsAccording to authors , "Probes for Pax2, Bmp4, Tbx5, SOHo, ephrin-B1, ephrin-B2, EphB1-B3, ALDH3/ALDH6, and ALDH1 were prepared as described (Refs)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204824).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Hindbrain
Lens
Midbrain
Retina
double labeled
19-24
stage 22
Eye
Forebrain
Hindbrain
Midbrain
Pineal Gland
 
31-44
stage 44
stage 44
  

Entry 5

GEISHA IdEphrinB2.Davey.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationDavey MG, James J, Paton IR, Burt DW, Tickle C. Analysis of talpid3 and wild-type chicken embryos reveals roles fro Hedgehog signalling in development of the limb bud vasculature. Dev Biol. 2007 Jan 1;301(1):155-65.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204824.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
Arteries
subclavian artery

Entry 6

GEISHA IdEphrin-B2.Marin.2001Data SourcePublication
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationMarín O, Blanco MJ, Nieto MA (2001). Differential expression of Eph receptors and ephrins correlates with the formation of topographic projections in primary and secondary visual circuits of the embryonic chick forebrain. Dev Biol. 2001 Jun 15;234(2):289-303.
CopyrightCopyright © 2001 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204824).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-35
stage 35
stage 35
Telencephalon
 

Entry 7

GEISHA IdEFNB2.Hardy.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationHardy KM, Yatskievych TA, Konieczka J, Bobbs AS, Antin PB. FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression. BMC Dev Biol. 2011 Mar 21;11:20.
Copyright© 2011 Hardy et al; licensee BioMed Central Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204824).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
stage 4
Early Mesoderm
Epiblast
Primitive Streak
lateral and medial mesoderm; lateral and preingression epiblast

Entry 8

GEISHA IdEPHRINB2.Watanabe.2009Data SourcePublication
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationWatanabe T, Sato Y, Saito D, Tadokoro R, Takahashi Y. EphrinB2 coordinates the formation of a morphological boundary and cell epithelialization during somite segmentation. Proc Natl Acad Sci U S A. 2009 May 5; 106(18): 7467–7472.
CopyrightCopyright 2009 national Academy of Sciences USA
CommentsThe probe was amplified by PCR using the following primers: 5′-ATGGCAGCGCGGCGGCGCGACG-3′ and 5′-CTAGTAAATGTTTGCTGGACTCTGAGG-3′ and was extracted from NCBI Acc#NM_204824.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Paraxial Mesoderm
 

Entry 9

GEISHA IdEPHRINB2.Mellott.2008Data SourcePublication
Complete cDNA Template Probeshow
ATGGCAGCGCGGCGGCGCGACGCCTCCGCCTGCAAGTACTGCTGGGGAGCCCTCATGGTTTTATGGAGAACTGCGCTGG
CCAAGTCCATCGTTTTAGACCCCATCTATTGGAATTCCTCCAACCCCAAGTTCCTTCCTGGACAAGGATTGGTACTATA
TCCACAGATAGGAGACAAACTGGATATTATATGCCCAAAGGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAG
GTCTACATGGTTGATAAAGACCAAGCAGATAGCTGTGCTATTAGAAAGGACAATACACCTCTACTCAACTGTGCCAAGC
CAGATCAAGATGTTAAGTTTACCATCAAATTTCAAGAATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAA
AGATTATTACGTCATATCAACATCAAATGGGTCTTTGGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAA
ACCATGAAGATCCTCATGAAAGTTGGACAAGATCCCAATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCC
CTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCACCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGA
TGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTCAGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATT
TTCATCGTCATCATCATCACTTTGGTGGTTCTATTATTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACA
CCACAACTCTCTCACTTAGTACATTAGCCACCCCAAAACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTAT
CATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCCCCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTAC
ATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAACATTTACTACAAGGTCTGA
CitationMellott DO, and Burke RD. Divergent roles for Eph and Ephrin in Avian Cranial Neural Crest. BMC Developmental Biology 2008, 8:56.
Copyright© 2008 Mellott and Burke; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204824.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 13
stage 14
stage 14
Head Mesenchyme
Hindbrain
 

Entry 10

GEISHA IdEFNB2.Anderson.2020Data SourceDirect Submission
Complete cDNA Template Probeshow
AATTCAGCCCTAATCTCTGGGGCCTGGAATTTCAGAAGAACAAAGATTATTACGTCATATCAACATCAAATGTGTCTTT
GGAGGGCCTGAATAACCAGGAGGGAGGGGTGTGCCAGACAAAAACCATGAAGATCCTCATGAAAGTTGGACAAGATCCC
AATTCTGCAGGGTTACCTCGGAGCACAGACCCAACCAAGCGCCCTGAACAGGAAGCTGGTACAAATGGGAAGAGCTCCA
CCACGAGTCCCTTTGTGAAGGACCACTCAGGATCTAGCACAGATGGCAGTAAGGCTGGGCATTCCAGTATACTGGGTTC
AGAAGTGGCCTTATTTGCAGGAATTGCATCAGGGTGCATCATTTTCATCGTCATCATCATCACTTTGGTGGTTCTATTA
TTGAAGTACCGGAGAAGACACAGGAAGCATTCCCCACAACACACCACAACTCTCTCACTTAGTACATTAGCCACCCCAA
AACGCAGTGGCAACAACAATGGTTCTGAGCCCAGTGACATTATCATTCCTCTAAGGACTGCAGACAGTGTTTTTTGCCC
CCACTATGAAAAGGTCAGCGGCGACTATGGACATCCAGTGTACATAGTACAAGAGATGCCTCCTCAGAGTCCAGCAAAC
ATCTACTACAAGGTCTAATCTAGAGCGGCCGCCACCGCGG
CommentsImages and probe sequence provided by Claire Anderson.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
stage 11
Amnion
Blood Islands
Extraembryonic Blood Vessels
Eye
Forebrain
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Rhombomeres
Somites
dorsal view
ventral view
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.357

Mouse

EmageMGI:105097
EurexpressMGI:105097
MGI GXDMGI:105097

Frog

Xenbase488605

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-67, ZDB-GENE-010618-1
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