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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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EMX1
empty spiracles homeobox 1

Gene

Official Symbol	EMX1
Official Full Name	empty spiracles homeobox 1
CGNC ID	12028
also known as	homeobox protein EMX1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001232150
Polypeptide	XP_001232151
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.53123

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	768977
Ensembl Gene
KEGG	gga:768977

Entry 1

GEISHA Id	Emx1.vonFrowein.2006	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show `GTGTCCCAGGAGAGCCTCCTCCTTCACGGCCCCTTCGCCCGCAAACCCAAACGTATCCGCACCGCCTTCTCCCCATCCC AGCTGCTACGGTTGGAAAGGGCCTTCGAGAAGAACCATTACGTGGTGGGCGCCGAGCGCAAGCAGCTGGCCAGCAGCCT CAGCCTCTCCGAGACCAGGTGAAAGTGTGGTTCCAGAACCGGCGGACGAAATACAAACGGCAGAAGCTGGAGGAGGAAG GGCCGGACTCGGAGCAGAAGAAGAAAGGTTCCCATCACATCAACCGATGGCGCCTCGCCACCAAGCAGTCGAGCGGAGA AGACATCGACGTCACCTCCAACGACTAA`
Comments	Plasmid templates were used to generate digoxygenin antisense riboprobes, Emx1, Emx2 (E. Bell) (Bell et al., 2001). Sequence below is from Bell.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-22

stage 22

Telencephalon

Entry 2

GEISHA Id	EMX1.Bell.2001	Data Source	Publication
Complete cDNA Template Probe	show `ATGGCGCCGGGGCGATTCCCCCCTCCTGACACTGCTGTTCTGCCTGCAGGGAGCGAAGTGTCCCAGGAGAGCCTCCTCC TTCACGGCCCCTTCGCCCGCAAACCCAAACGTATCCGCACCGCCTTCTCCCCATCCCAGCTGCTACGGTTGGAAAGGGC CTTTGAGAAGAACCATTACGTGGTGGGCGCCGAGCGCAAGCAGCTGGCCAGCAGCCTCAGCCTCTCCGAGACCCAGGTG AAAGTGTGGTTCCAGAACCGGCGGACGAAATACAAACGGCAGAAGCTGGAGGAGGAAGGGCCGGACTCGGAGCAGAAGA AGAAAGGTTCCCATCACATCAACCGATGGCGCCTCGCCACCAAGCAGTCGAGCGGAGAAGACATCGACGTCACCTCCAA CGACTAA`
Citation	Bell E, Ensini M, Gulisano M, Lumsden A. Dynamic domains of gene expression in the early avian forebrain. Dev Biol. 2001 Aug 1;236(1):76-88.
Copyright	Copyright © 2001 Academic Press All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001232150).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

stage 11

stage 12

Forebrain
Telencephalon

Anterior end of the Prosencephalon
Dorsal Telencephalon

13-18

stage 13

Expression patterns of qin, Emx1, Emx2, and Pax6 along the A-P axis of the prosencephalon during early development.

19-20

stage 19

stage 20

Pharyngeal Arches and Clefts
Telencephalon

Dorsal Telencephalon
Dorsal Telencephalon (pallium)
Expression of Emx2, Emx1, and qin at HH17 and HH19.
Expression of dorsal-expressed genes, Emx1, Emx2, Pax6 in relation to a ventral-expressed gene, Dlx2.

Entry 3

GEISHA Id	EMX1.Halilagic.2007	Data Source	Publication
Complete cDNA Template Probe	show `ATGGCGCCGGGGCGATTCCCCCCTCCTGACACTGCTGTTCTGCCTGCAGGGAGCGAAGTGTCCCAGGAGAGCCTCCTCC TTCACGGCCCCTTCGCCCGCAAACCCAAACGTATCCGCACCGCCTTCTCCCCATCCCAGCTGCTACGGTTGGAAAGGGC CTTTGAGAAGAACCATTACGTGGTGGGCGCCGAGCGCAAGCAGCTGGCCAGCAGCCTCAGCCTCTCCGAGACCCAGGTG AAAGTGTGGTTCCAGAACCGGCGGACGAAATACAAACGGCAGAAGCTGGAGGAGGAAGGGCCGGACTCGGAGCAGAAGA AGAAAGGTTCCCATCACATCAACCGATGGCGCCTCGCCACCAAGCAGTCGAGCGGAGAAGACATCGACGTCACCTCCAA CGACTAA`
Citation	Halilagic A, Ribes V, Ghyselinck NB, Zile MH, Dollé P, Studer M. Retinoids control anterior and dorsal properties in the developing forebrain. Dev Bio 2007 Mar 1;303(1):244-58
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_001232150.1). Images are quail, but sequence and map shown are chick.