GEISHA - A Chicken Embryo Gene Expression Database
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EPHA3
EPH receptor A3

Gene
Official SymbolEPHA3
Official Full NameEPH receptor A3
CGNC ID11474
also known asCEK4, ETK1, ephrin type-A receptor 3|EK4|EPH-like kinase 4|receptor tyrosine kinase|tyrosine-protein kinase receptor ETK1, Tyrosine-protein kinase receptor ETK1, CEK4, Ephrin type-A receptor 3 precursor
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205430
PolypeptideNP_990761
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.805
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2042ENSG00000044524MIM:179611
Mouse13837All phenotypic alleles (1):Targeted, knock-out(1) MGI:99612
Xenopus1004950456035244
Zebrafish795902, 114356ZDB-GENE-060503-862, ZDB-GENE-010724-10ZFIN:ZDB-GENE-060503-862, ZFIN:ZDB-GENE-010724-10
Gene Ontology
Molecular FunctionATP binding, ephrin receptor activity, GPI-linked ephrin receptor activity
Biological Processcell migration, ephrin receptor signaling pathway, fasciculation of motor neuron axon, more...fasciculation of sensory neuron axon, regulation of actin cytoskeleton organization, regulation of epithelial to mesenchymal transition, regulation of focal adhesion assembly, regulation of microtubule cytoskeleton organization, regulation of Rho GTPase activity
Cellular Componentearly endosome, integral component of plasma membrane
Links to other databases
Entrez Gene396402
Ensembl Gene
KEGGgga:396402

Entry 1

GEISHA IdEphA3Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CGCTCTGCTCGCGCGCTGCTGCCCCGCCGACATGGACCGCCGCCGCCTGCCGCTGCTGCTGCTCTGCGCTGCCCTCGGC
TCCGCCGGGCGTCTGAGCGCCCGCCCCGGCAACGAAGTTAATCTGCTGGATTCAAAAACAATTCAAGGGGAGCTGGGCT
GGATCTCCTACCCATCACATGGGTGGGAAGAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGA
GAGCAATGTTATGGATCACAGTCAAAACAATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATAT
GTGGAGCTCAAGTTTACCTTGAGGGACTGCAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGT
ATTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGA
TGAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGT
AAGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGT
GCCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTATGGACTCCCAGTCCCTGGTGGAGGTGCGGGG
TTCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTGCAGCACGGAAGGAGAATGGCTAGTGCCCATA
GGGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGCCAAGCTTGTCGACCTGGGTTCTATAAAGCTT
CTGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCTATGAAGATGCATCTCTGAACTGCAGGTGTGA
AAAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCACCAGACCACCATCTGCTCCAAGAAACGTTATT
TCTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTTGATACAGGAGGTCGAAAAGATGTCACTTTCA
ACATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTTGCAGTGACAACGTACGGTTCTTACCCCGTCA
GACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACATACCAATTACACTTTTGAGATTGATGCAGTC
AACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTCAGCATCACGACTAATCAGGCTGCGCCATCCC
CCATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTCTGTCTTGGCAGGAGCCTGAGCACCCAAATGG
AATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGAGACAAGCTATACTATTCTGAGAGCCAAAAGC
ACTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTCCAAATTCGAGCCCGAACTGCAGCTAGATATG
GGACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCTCCATTTCCAGTGAAAATAGCCAGGTCGTTAT
GATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGTGTACGTCTTGATTGGGAGATTCTGCGGATAC
AAGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAATGGCCACTTAAAACTCCCAGGCCTGAGAACTT
ATGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAATTTGCCAAGGAACTAGATGCTTCTAATATATC
AATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGGGCGCCTGAAGCTGCCTTCTAAAAAGGAAATT
TCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCATGG
GGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGAATA
CATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATGCTT
CGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATACTCA
TCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTACAC
AACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGTGAT
GCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGGACG
TAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCTGGA
CTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAATCCC
AGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTTCAG
CGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTACAG
CTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAGAAG
ATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGTTGC
TGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTTCTT
TGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTAAAA
ATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAAATT
TC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 11
Blood Vessels
Forebrain
Hindbrain
Paraxial Mesoderm
Somites
 
13-18
stage 14
Blood Vessels
Eye
Head Mesenchyme
Paraxial Mesoderm
Somites
 
19-23
stage 20
stage 23
Eye
Forebrain
Head Mesenchyme
Pharyngeal Arches and Clefts
Somites
Telencephalon
 

Entry 2

GEISHA IdEphA3.Baker.2003Data SourcePublication
Complete cDNA Template Probeshow
ATTTCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCA
TGGGGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGA
ATACATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATG
CTTCGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATAC
TCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTA
CACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGT
GATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGG
ACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCT
GGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAAT
CCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTT
CAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTA
CAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAG
AAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGT
TGCTGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTT
CTTTGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTA
AAAATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAA
ATTTC
CitationBaker RK, Antin PB. Ephs and ephrins during early stages of chick embryogenesis Dev Dyn. 2003 Sep;228(1):128-42.
Copyright2003 Wiley-Liss, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 9
stage 11
stage 11
stage 11
stage 11
stage 11
stage 12
stage 12
Arteries
Blood Vessels
Forebrain
Heart
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Rhombomeres
Sclerotome
Sinus Venosus
Somites
Splanchnic Mesoderm
Veins
cardiogenic mesoderm
dorsal mesocardium
dorsal mesocardium,
epithelial somite
lateral vasculature
r3, r5
vitelline artery plexus
vitelline vein plexus

Entry 3

GEISHA IdEphA3.Mühleisen.2006Data SourcePublication
Complete cDNA Template Probeshow
CGCTCTGCTCGCGCGCTGCTGCCCCGCCGACATGGACCGCCGCCGCCTGCCGCTGCTGCTGCTCTGCGCTGCCCTCGGC
TCCGCCGGGCGTCTGAGCGCCCGCCCCGGCAACGAAGTTAATCTGCTGGATTCAAAAACAATTCAAGGGGAGCTGGGCT
GGATCTCCTACCCATCACATGGGTGGGAAGAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGA
GAGCAATGTTATGGATCACAGTCAAAACAATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATAT
GTGGAGCTCAAGTTTACCTTGAGGGACTGCAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGT
ATTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGA
TGAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGT
AAGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGT
GCCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTATGGACTCCCAGTCCCTGGTGGAGGTGCGGGG
TTCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTGCAGCACGGAAGGAGAATGGCTAGTGCCCATA
GGGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGCCAAGCTTGTCGACCTGGGTTCTATAAAGCTT
CTGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCTATGAAGATGCATCTCTGAACTGCAGGTGTGA
AAAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCACCAGACCACCATCTGCTCCAAGAAACGTTATT
TCTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTTGATACAGGAGGTCGAAAAGATGTCACTTTCA
ACATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTTGCAGTGACAACGTACGGTTCTTACCCCGTCA
GACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACATACCAATTACACTTTTGAGATTGATGCAGTC
AACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTCAGCATCACGACTAATCAGGCTGCGCCATCCC
CCATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTCTGTCTTGGCAGGAGCCTGAGCACCCAAATGG
AATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGAGACAAGCTATACTATTCTGAGAGCCAAAAGC
ACTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTCCAAATTCGAGCCCGAACTGCAGCTAGATATG
GGACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCTCCATTTCCAGTGAAAATAGCCAGGTCGTTAT
GATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGTGTACGTCTTGATTGGGAGATTCTGCGGATAC
AAGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAATGGCCACTTAAAACTCCCAGGCCTGAGAACTT
ATGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAATTTGCCAAGGAACTAGATGCTTCTAATATATC
AATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGGGCGCCTGAAGCTGCCTTCTAAAAAGGAAATT
TCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCATGG
GGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGAATA
CATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATGCTT
CGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATACTCA
TCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTACAC
AACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGTGAT
GCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGGACG
TAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCTGGA
CTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAATCCC
AGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTTCAG
CGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTACAG
CTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAGAAG
ATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGTTGC
TGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTTCTT
TGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTAAAA
ATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAAATT
TC
CitationMühleisen TW, Agoston Z, Schulte D. Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intraretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vivo. Dev Biol. 2006 Sep 1;297(1):59-73.
CopyrightReprinted from Developmental Biology, Volume 297, Thomas W. Mühleisen, Zsuzsa Agoston and Dorothea Schulte, Retroviral misexpression of cVax disturbs retinal ganglion cell axon fasciculation and intaretinal pathfinding in vivo and guidance of nasal ganglion cell axons in vitro, Pages 56-73, Copyright 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "The cDNA clones used to generate in situ probes for EphA3, EphA4, ephrin-A5, ephrin-A2, EphB2, EphB3, ephrin-B1, ephrin-B2 or RCS, which recognizes a viral core protein, were described elsewhere (Schulte et al., 1999) or were gifts from J. Flanagan, C. Cepko (Harvard Medical School, Boston), or E. Pasquale (The Burnham Institute, La Jolla, California; Holash and Pasquale, 1995 and Cheng et al., 1995). As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205430)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
Eye
Retina
 

Entry 4

GEISHA IdEphA3.Mellott.2008Data SourcePublication
Complete cDNA Template Probeshow
CTGGGCACTTGCAAAGAGACTTTCAATCTGTATTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACC
AATTTACGAAGATTGACACCATTGCGGCTGATGAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAA
TACCGAAGTCCGCGAGGTGGGACCTGTTAGTAAGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCC
TTAGTCTCGGTGCGAGTGTACTTCAAGAAGTGCCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTA
TGGACTCCCAGTCCCTGGTGGAGGTGCGGGGTTCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTG
CAGCACGGAAGGAGAATGGCTAGTGCCCATAGGGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGC
CAAGCTTGTCGACCTGGGTTCTATAAAGCTTCTGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCT
ATGAAGATGCATCTCTGAACTGCAGGTGTGAAAAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCAC
CAGACCACCATCTGCTCCAAGAAACGTTATTTCTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTT
GATACAGGAGGTCGAAAAGATGTCACTTTCAACATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTT
GCAGTGACAACGTACGGTTCTTACCCCGTCAGACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACA
TACCAATTACACTTTTGAGATTGATGCAGTCAACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTC
AGCATCACGACTAATCAGGCTGCGCCATCCCCCATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTC
TGTCTTGGCAGGAGCCTGAGCACCCAAATGGAATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGA
GACAAGCTATACTATTCTGAGAGCCAAAAGCACTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTC
CAAATTCGAGCCCGAACTGCAGCTAGATATGGGACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCT
CCATTTCCAGTGAAAATAGCCAGGTCGTTATGATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGT
GTACGTCTTGATTGGGAGATTCTGCGGATACAAGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAAT
GGCCACTTAAAACTCCCAGGCCTGAGAACTTATGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAAT
TTGCCAAGGAACTAGATGCTTCTAATATATCAATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGG
GCGCCTGAAGCTGCCTTCTAAAAAGGAAATTTCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGA
AGGGATTTCCTGGGAGAAGCAAGCATCATGGGGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTA
AAAGTAAACCAGTTATGATTGTTACTGAATACATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCA
GTTCACAGTCATTCAGCTAGTAGGCATGCTTCGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTC
CACCGAGATCTAGCTGCTCGTAATATACTCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTG
TATTGGAAGATGACCCAGAAGCTGCTTACACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCAT
TGCATACCGGAAGTTCACATCAGCCAGTGATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAA
AGGCCGTACTGGGAGATGTCCTTCCAGGACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACT
GCCCAGCTGCCTTGTATCAGCTGATGCTGGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGT
CAGCATCCTGGATAAGCTGATCCGTAATCCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTT
CTCCTGGACCAAAGTAACATTGACATTTCAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGT
GCAAAGGCATTTTCACGGGTGTGGAGTACAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGT
TGGTGTTACAGTTGTGGGGCCTCAAAAGAAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCT
GTTCCTGTGTAAGGTACCAAAATGATGTTGCTGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGG
CTGATAAACGGCACGGTTTAAAGGAGTTCTTTGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGA
CACTCAAATACTGAGTATAAATGCCTTAAAAATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCT
CTTAACTGACTGTTAATGCAGATAGTAAATTTC
CitationMellott DO, and Burke RD. Divergent roles for Eph and Ephrin in Avian Cranial Neural Crest. BMC Developmental Biology 2008, 8:56.
Copyright© 2008 Mellott and Burke; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205430.2. Authors said: Primers EphA3-F1 (5'-GTCGACCTGGGCACTTGCAAAGAG-3') and EphA3-R1 (5'-GGTACCGCCAGCATTACACAAGCAC-3') were used to amplify a fragment of the chicken EphA3 gene that was subsequently subcloned between the BamHI and EcoRV sites of pBluescript II SK +.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
stage 14
stage 14
Head Mesenchyme
 

Entry 5

GEISHA IdEPHA3.Takahashi.2003Data SourcePublication
Complete cDNA Template Probeshow
GATCTAGCTGCTCGTAATATACTCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGG
AAGATGACCCAGAAGCTGCTTACACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATA
CCGGAAGTTCACATCAGCCAGTGATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCG
TACTGGGAGATGTCCTTCCAGGACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAG
CTGCCTTGTATCAGCTGATGCTGGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCAT
CCTGGATAAGCTGATCCGTAATCCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTG
GACCAAAGTAACATTGACATTTCAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAG
GCATTTTCACGGGTGTGGAGTACAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGT
TACAGTTGTGGGGCCTCAAAAGAAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCT
GTGTAAGGTACCA
CitationTakahashi H, Shintani T, Sakuta H, Noda M. CBF1 controls the retinotectal topographical map along the anteroposterior axis through multiple mechanisms. Development. 2003 Nov;130(21):5203-15. Epub 2003 Sep 3.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors.
CommentsAuthors indicated this sequence was the probe.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
stage 18
stage 18
Retina
 
31-34
stage 34
stage 34
stage 34
Retina
 

Entry 6

GEISHA IdEPH3A.Schulte.2005Data SourcePublication
Complete cDNA Template Probeshow
GCTCTGCTCGCGCGCTGCTGCCCCGCCGACATGGACCGCCGCCGCCTGCCGCTGCTGCTGCTCTGCGCTGCCCTCGGCT
CCGCCGGGCGTCTGAGCGCCCGCCCCGGCAACGAAGTTAATCTGCTGGATTCAAAAACAATTCAAGGGGAGCTGGGCTG
GATCTCCTACCCATCACATGGGTGGGAAGAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGAG
AGCAATGTTATGGATCACAGTCAAAACAATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATATG
TGGAGCTCAAGTTTACCTTGAGGGACTGCAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGTA
TTACATGGAATCCGATGATGACCATTTGGCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGAT
GAGAGCTTCACCCAGATGGATCTTGGGGACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGTA
AGAAGGGCTTTTACTTGGCTTTCCAAGATGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGTG
CCCTTTCACTGTCAAGAACCTCGCCATGTTTCCAGATACAGTTCCTATGGACTCCCAGTCCCTGGTGGAGGTGCGGGGT
TCTTGTGTCAATCATTCCAAGGAGGAAGAGCCACCCAAGATGTACTGCAGCACGGAAGGAGAATGGCTAGTGCCCATAG
GGAAGTGCTTGTGTAATGCTGGCTATGAAGAGAGAGGCTTTGCGTGCCAAGCTTGTCGACCTGGGTTCTATAAAGCTTC
TGCTGGCAATGTGAAGTGTGCCAAATGCCCACCTCACAGCTCTACCTATGAAGATGCATCTCTGAACTGCAGGTGTGAA
AAGAATTACTTTCGCTCTGAGAAAGACCCTCCATCCATGGCTTGCACCAGACCACCATCTGCTCCAAGAAACGTTATTT
CTAACATCAATGAGACATCTGTTATTCTGGACTGGAGCTGGCCTCTTGATACAGGAGGTCGAAAAGATGTCACTTTCAA
CATCATTTGCAAAAAATGTGGAGGAAGCAGCAAGATATGTGAGCCTTGCAGTGACAACGTACGGTTCTTACCCCGTCAG
ACTGGCCTCACCAACACCACGGTGACAGTAGTGGACCTTTTGGCACATACCAATTACACTTTTGAGATTGATGCAGTCA
ACGGGGTATCTGACTTGAGTACACTTTCGAGACAATTTGCTGCTGTCAGCATCACGACTAATCAGGCTGCGCCATCCCC
CATCACAGTGATAAGGAAAGACCGGACATCCAGGAACAGCGTGTCTCTGTCTTGGCAGGAGCCTGAGCACCCAAATGGA
ATCATCTTGGACTACGAGGTCAAATACTACGAAAAGCAGGAACAAGAGACAAGCTATACTATTCTGAGAGCCAAAAGCA
CTAACGTTACTATCAGCGGCCTCAAACCTGATACCACCTACGTCTTCCAAATTCGAGCCCGAACTGCAGCTAGATATGG
GACAAGCAGCCGCAAGTTTGAATTTGAAACCAGTCCAGATTCATTCTCCATTTCCAGTGAAAATAGCCAGGTCGTTATG
ATTGCCATTTCAGCTGCAGTTGCCATCATTCTCCTCACGGTTGTTGTGTACGTCTTGATTGGGAGATTCTGCGGATACA
AGAAGTCTAAACATGGTACCGATGAGAAAAGACTACATTTTGGGAATGGCCACTTAAAACTCCCAGGCCTGAGAACTTA
TGTAGATCCACATACGTACGAAGATCCCAATCAAGCTGTACATGAATTTGCCAAGGAACTAGATGCTTCTAATATATCA
ATTGATAAAGTTGTTGGAGCAGGGGAATTTGGAGAAGTGTGCAGTGGGCGCCTGAAGCTGCCTTCTAAAAAGGAAATTT
CAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCATGGG
GCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGAATAC
ATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATGCTTC
GTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATACTCAT
CAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTACACA
ACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGTGATG
CGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGGACGT
AATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCTGGAC
TGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAATCCCA
GCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTTCAGC
GTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTACAGC
TCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAGAAGA
TTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGTTGCT
GAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTTCTTT
GCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTAAAAA
TAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAAATTT
C
CitationSchulte D, Peters MA, Sen J, Cepko CL. The rod photoreceptor pattern is set at the optic vesicle stage and requires spatially restricted cVax expression. J Neurosci. 2005 Mar 16;25(11):2823-31.
Copyright Copyright © 2012 by the Society for Neuroscience
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205430.2 )
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31
stage 31
Diencephalon
 

Entry 7

GEISHA IdEPHA3.Jayasena.2005Data SourcePublication
Complete cDNA Template Probeshow
ATTTCAGTGGCCATCAAAACTCTGAAAGCTGGCTACACAGAAAAACAGAGAAGGGATTTCCTGGGAGAAGCAAGCATCA
TGGGGCAGTTTGACCACCCCAACATCATCCGACTGGAGGGCGTTGTGACTAAAAGTAAACCAGTTATGATTGTTACTGA
ATACATGGAAAACGGTTCCTTGGACAGCTTCCTACGGAAACATGATGCCCAGTTCACAGTCATTCAGCTAGTAGGCATG
CTTCGTGGGATCGCATCTGGCATGAAATATTTGTCAGATATGGGTTATGTCCACCGAGATCTAGCTGCTCGTAATATAC
TCATCAATAGTAACTTGGTGTGCAAAGTCTCAGATTTTGGTCTTTCTCGTGTATTGGAAGATGACCCAGAAGCTGCTTA
CACAACAAGGGGGGGCAAGATTCCCATCCGATGGACGTCACCAGAAGCCATTGCATACCGGAAGTTCACATCAGCCAGT
GATGCGTGGAGCTATGGGATTGTCCTCTGGGAGGTGATGTCTTATGGAGAAAGGCCGTACTGGGAGATGTCCTTCCAGG
ACGTAATTAAAGCCGTTGATGAAGGGTATCGCTTGCCACCTCCTATGGACTGCCCAGCTGCCTTGTATCAGCTGATGCT
GGACTGCTGGCAGAAAGACAGAAACAACAGACCCAAGTTTGAGCAGATTGTCAGCATCCTGGATAAGCTGATCCGTAAT
CCCAGCAGTCTGAAAATAATCACCAATGCGGCAGCAAGGCCATCAAATCTTCTCCTGGACCAAAGTAACATTGACATTT
CAGCGTTCCGCACGGCAGGTGATTGGCTCAATGGTTTTCGAACAGGACAGTGCAAAGGCATTTTCACGGGTGTGGAGTA
CAGCTCCTGTGATACAATAGCCAAGATTTCCACTGATGACATGAAGAAAGTTGGTGTTACAGTTGTGGGGCCTCAAAAG
AAGATTGTTAGCAGTATCAAAACTCTAGAAACTCATACGAAGAACAGCCCTGTTCCTGTGTAAGGTACCAAAATGATGT
TGCTGAGGACAGAAAAAAAAGAAAAGTCGCATCAAAGTGCAAAAGCGATGGCTGATAAACGGCACGGTTTAAAGGAGTT
CTTTGCAGCAGTTTTGGAAACATAATGGTTGAAATTTCAAACCCACTGAGACACTCAAATACTGAGTATAAATGCCTTA
AAAATAGGAGCGAACTTGTTTTCTATCTGTTAATCCTGAAGGGTGGGTGCTCTTAACTGACTGTTAATGCAGATAGTAA
ATTTC
CitationJayasena CS, Flood WD, Koblar SA. High EphA3 expressing ophthalmic trigeminal sensory axons are sensitive to ephrin-A5-Fc: implications for lobe specific axon guidance. Neuroscience. 2005;135(1):97-109.
CopyrightCopyright © 2005 IBRO. Published by Elsevier Ltd. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information provided in the publication as described in Jayasena et al., 2005.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 20
Cranial Ganglia
Peripheral Nervous System
TG: trigeminal ganglion
all
 
  

Entry 8

GEISHA IdEphA3.Iwamasa.1999Data SourcePublication
Complete cDNA Template Probeshow
GAGATTAGTGGTGTTGATGAGCATTATACTCCAATCAGAACTTACCAAGAGAGCAATGTTATGGATCACAGTCAAAACA
ATTGGCTGCGAACAAACTGGATTCCACGCAATTCAGCGCAGAAGATATATGTGGAGCTCAAGTTTACCTTGAGGGACTG
CAATAGTATCCCTCTAGTTCTGGGCACTTGCAAAGAGACTTTCAATCTGTATTACATGGAATCCGATGATGACCATTTG
GCAAAGTTCAGAGAGCACCAATTTACGAAGATTGACACCATTGCGGCTGATGAGAGCTTCACCCAGATGGATCTTGGGG
ACCGGATTCTCAAGCTGAATACCGAAGTCCGCGAGGTGGGACCTGTTAGTAAGAAGGGCTTTTACTTGGCTTTCCAAGA
TGTAGGTGCATGTGTTGCCTTAGTCTCGGTGCGAGTGTACTTCAAGAAGTGCCCTTTCACTGTCAAGAACCTCGCCA
CitationIwamasa H, Ohta K, Yamada T, Ushijima K, Terasaki H, Tanaka H. Expression of Eph receptor tyrosine kinases and their ligands in chick embryonic motor neurons and hindlimb muscles. Dev Growth Differ. 1999 Dec;41(6):685-98.
CopyrightCopyright © 1999 John Wiley & Sons, Inc.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Iwamasa et al.1999.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 27
stage 27
stage 27
stage 29
stage 29
stage 29
Spinal Cord
brachial
lumbar
thoracic
31-44
stage 32
stage 32
stage 32
stage 44
Spinal Cord
brachial
lumbar
thoracic
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.805

Mouse

EmageMGI:99612
EurexpressMGI:99612
MGI GXDMGI:99612

Frog

Xenbase6035244

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060503-862, ZDB-GENE-010724-10
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