GEISHA - A Chicken Embryo Gene Expression Database
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FLRT3
fibronectin leucine rich transmembrane protein 3

Gene
Official SymbolFLRT3
Official Full Namefibronectin leucine rich transmembrane protein 3
CGNC ID6617
also known asleucine-rich repeat transmembrane protein FLRT3|fibronectin-like domain-containing leucine-rich transmembrane protein 3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_426107
PolypeptideXP_426107
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.50441
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human23767ENSG00000125848MIM:604808
Mouse71436ENSMUSG00000051379All phenotypic alleles (6):Targeted, knock-out(4) Targeted, other(2) MGI:1918686
Xenopus100144692, 503672490900
Zebrafish558864ENSDARG00000076895ZDB-GENE-030131-1988ZFIN:ZDB-GENE-030131-1988
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene428552
Ensembl Gene
KEGGgga:428552

Entry 1

GEISHA IdI38Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GATCTATCTCAGACTTCTTTTTCTCTCTCGAAATCACCTTAGCACCATTCCCTGGGGTTTGCCTAAAACAATAGAAGAG
CTACGCTTGGATGATAATCGTATTTCCACGATTTCAGAGCTGTCCCTTCAAGACCTTACAAATCTAAAACGCCTTGTTC
TAGATGGAAATCTTCTAAATAACCACGGATTAGGAGACAAGGTCTTTATGAATCTAGTCAATCTTACAGAACTGTCATT
GGTTCGCAATTCACTTACAGCCGCACCAGTAAATTTGCCAGGAACAAACCTAAGGAAGCTTTATCTGCAAGAAAACCAT
ATCAATCACGTGCCACCCAATGCTTTCTCTTACTTAAGGCAGTTGTATCGACTAGATATGTCCAATAACAATCTCAGCA
ATTTACCTCAGGGTGTCTTTGATGACCTGGACAACATAACTCAGCTGTTTCTTCGCAACAACCCTTGGCACTGTGGGTG
CAAAATGAAGTGGGTCCGTGACTGGTTACAGTCATTGCCTTTGAAAGTGAACGTACGTGGGCTGATGTGCCAGGCGCCG
GAAAAAGTGCGCGGAATGGCTATCAAAGACCTCAACGCGGAACTGTTCGATTGTAAGGATGACATGAGCACCATCCAGA
TCACTACTGCGGTACCCAACACGCTGTACCCGGCCCAGGGACACTGGCCGGTTTCTGTGACCAAACAACCAGACATCAA
GACCCCCCACCTAAACAAGAACTACAGAACCACGGCCAGCCCAGTACGCAAGATCATTACAATATTTGTGAAATCGGTG
AGCACAGAGACCATCCACATCTCCTGGAAAGTTGCGCTNGCCAATGACAGCCTTACGGCTCAGCTGGCTCAAGATGGGC
CACAGCCCTGCCTTTGGATCTATAACTGAAACCATCGTAACAGGGGACAGGAGTGACTACCTGCTTACAGCACTCGAAC
CAGAGTCGCCATACCGCGTGTGCATGGTCCCCATGGAAACCAGCAACATCTATCTCTCTGACGAGACACCTGAATGCAT
CGAGACCGAGACAGCTCCCCTTAAGATGTACAACCCGACAACCACACTCAACCGGGAGCAGGAAAAGGAGCCCTACAAG
AACTCCAGCGTGCCTCTGGCCGCCATCATCGGTGGCGCGGTGGCACTGGTGGCCCTGGCACTGCTGGCCCTGGTGTGCT
GGTACGTCCACAGGAATGGGGCCCTCTTCTCCCGGCACTGCGCCTACAGCAAGGGGCGCAGGAGGAAGGACGACTATGC
TGAGGCGGGTACCAAGAAGGACAACTCCATCCTAGAAATCAGGGAGACTTCTTTTCAGATGATACCCATCACTAACGAC
CAGGTGTCCAAGGAGGAGTTTGTAATACACACCATTTTCCCCCCTAATGGCATGAATCTGTATAAGAACAGCCACAGTG
AAAGCAGTAGTAACAGGAGCTACAGAGACAGTGGTATTCCAGATTCAGATCATTCACACTCATGATACTGAAGGACATG
AAAGACTGGTTTGGTTTTGGTTGGTTTGTTGTTTGGTTTTTTTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Unlabeled
 
4-6
stage 4
stage 4
stage 4
stage 6
Endoderm, early
Extraembryonic
Germinal Crescent
Hypoblast
 
7-12
stage 11
stage 11
stage 11
stage 11
stage 12
stage 12
stage 12
Anterior Intestinal Portal
Endoderm
Heart
Heart Tube
Somites
 
13-18
stage 14
Ear/Otic Placcode
Somites
Surface Ectoderm
 
19-22
stage 22
stage 22
Heart
Leg AER
Somites
Tail
 

Entry 2

GEISHA IdFlrt3.Smith.2006Data SourcePublication
Forward cDNA Template Probeshow
AGATGAATTCCCCACTAACCTCCCTAAGTACGTCAAAGAACTGCATTTGCAGGAGAATAATATAAGGACCATCACTTAC
GATTCACTTTCACAAATTCCTTATCTGGAAGAACTGCATTTGGATGATAATTCTGTTTCCGCTGTTAGCATTGAAGATG
GAGCTTTCAGGGACAACATCTATCTCAGACTTCTTTTTCTCTCTCGAAATCACCTTAGCACCATTCCCTGGGGTTTGCC
TAAAACAATAGAAGAGCTACGCTTGGATGATAATCGTATTTCCACGATTTCAGAGCTGTCCCTTCAAGACCTTACAAAT
CTAAAACGCCTTGTTCTAGATGGAAATCTTCTAAATAACCACGGATTAGGAGACAAGGTCTTTATGAATCTAGTCAATC
TTACAGAACTGTCATTGGTTCGCAATTCACTTACAGCCGCACCAGTAAATTTGCCAGGAACAAACCTAAGGAAGCTTTA
TCTGCAAGAAAACCATATCAATCACGTGCCACCCAATGCTTTCTCTTACTTAAGGCAGTTGTATCGACTAGATATGTCC
AATAACAATCTCAGCAATTTACCTCAGGGTGTCTTTGATGACCTGGACAACATAACTCAGCTGTTTCTTCGCAACAACC
CTTGGCACTGTGGGTGCAAAATGAAGTGGGTCCGTGACTGGTTACAGTCATTGCCTTTGAAAGTGAACGTACGTGGGCT
GATG
Reverse cDNA Template Probeshow
ATGACATGAGCACCATCCAGATCACTACTGCGGTACCCAACACGCTGTACCCGGCCCAGGGACACTGGCCGGTTTCTGT
GACCAAACAACCAGACATCAAGACCCCCAACCTAAACAAGAACTACAGAACCACGGCCAGCCCAGTACGCAAGATCATT
ACAATATTTGTGAAATCGGTGAGCACAGAGACCATCCACATCTCCTGGAAAGTTGCGCTGCCAATGACAGCCTTACGGC
TCAGCTGGCTCAAGATGGGCCACAGCCCTGCCTTTGGATCTATAACTGAAACCATCGTAACAGGGGACAGGAGTGACTA
CCTGCTTACAGCACTCGAACCAGAGTCGCCATACCGCGTGTGCATGGTCCCCATGGAAACCAGCAACATCTATCTCTCT
GACGAGACACCTGAATGCATCGAGACCGAGACAGCTCCCCTCAAGATGTACAACCCGACAACCACACTCAACCGGGAGC
AGGAAAAGGAGCCCTACAAGAACTCCAGCGTGCCTCTGGCCGCCATCATCGGTGGCGCGGTGGCACTGGTGGCCCTGGC
ACTGCTGGCCCTGGTGTGCTGGTACGTCCACAGGAATGGGGCCCTCTTCTCCCGGCACTGCGCCTACAGCAAGGGGCGC
AGGAGGAAGGACGACTATGCTGAGGCGGGTACCAAGAAGGACAACTCCATCCTAGAAATCAGGGAGACTTCTTTTCAGA
TGATACCCATCACTAACGACCAGGTGTCCAAGGAGGAGTTTGTAATACACACCATTTTCCCCCCTAATGGCATGAATCT
GTATAAGAACAGCCACAGTGAAAGCAGTAGTAACAGGAGCTACAGAGACAGTGGTATTCC
CitationSmith TG, Tickle C. The expression of Flrt3 during chick limb development. Int J Dev Biol. 2006;50(8):701-4.
Copyright"Reprinted from Int. J. Dev. Biol., 50, Smith TG, Tickle C, The expression of Flrt3 during chick limb development, 701-4, Copyright (2006), with permission from Copyright © 2006 UBC Press". All rights reserved.
CommentsAccording to authors , "The chick Flrt3 orthologue was discovered from a search inthe ENSEMBL Gallus gallus genome browser: Identification ENSGALG00000008716. PCR was performed on stage HH16 whole-embryo cDNA to generate two probes that hybridized to different regions of the cFlrt3 gene. Primers used were 1) For: 5’- AGATGAATTCCCCACTAACCTC -3’ and Rev: 5’- ACGTGCGGCCGCATCAGCCCACGTACGTTCAC -3’. 2) For: 5’- ACGTGAATTCATGACATGAGCACCATCCAG -3’ Rev: 5’- ACGTGCGGCCGCGGAATACCACTGTCTCTGTAG -3’. Each PCR product was cloned into pBluescript (KS)." As information provided was insufficient to verify exact probe used for photos, the two probes are shown as 5' and 3' reads drawn from NCBI (acc # XM_426107).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 18
stage 18
Dermomyotome
Somatic Mesoderm
Wing AER
Wing Mesenchyme
 
19-24
stage 19
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 24
Dermatome
Isthmus/MHB
Lateral Plate Mesoderm
Leg Mesenchyme
Limb Buds
Midbrain
Nasal Placcode/Nerve
Retina
Somatic Mesoderm
Somites
Tail
Wing AER
Wing Mesenchyme
 
25
stage 25
stage 25
stage 25
stage 25
Lateral Plate Mesoderm
Leg AER
Leg Mesenchyme
Paraxial Mesoderm
Wing AER
Wing Mesenchyme
 

Entry 3

GEISHA IdFLRT3.Tomas.2011Data SourcePublication
Complete cDNA Template Probeshow
TCCAAGATCATTACAATATTTGTGAAATCGGTGAGCACAGAGACCATCCACATCTCCTGGAAAGTTGCGCTGCCAATGA
CAGCCTTACGGCTCAGCTGGCTCAAGATGGGCCACAGCCCTGCCTTTGGATCTATAACTGAAACCATCGTAACAGGGGA
CAGGAGTGACTACCTGCTTACAGCACTCGAACCAGAGTCGCCATACCGCGTCTGCATGGTCCCCATGGAAACCAGCAAC
ATCTATCTCTCTGACGAGACACCTGAATGCATCGAGACCGAGACAGCTCCCCTCAAGATGTACAACCCGACAACCACAC
TCAACCGGGAGCAGGAAAAGGAGCCCTACAAGAACTCCAGCGTGCCTCTGGCCGCCATCATCGGTGGCGCGGTGGCACT
GGTGGCCCTGGCACTGCTGGCCCTGGTGTGCTGGTACGTCCACAGGAATGGGGCCCTCTTCTCCCGGCACTGCGCCTAC
AGCAAGGGGCGCAGGAGGAAGGACGACTATGCTGAGGCGGGTACCAAGAAGGACAACTCCATTCTAGAAATCAGGGAGA
CTTCTTTTCAGATGATACCCATCACTAACGACCAGGTGTCCAAGGAGGAGTTTGTAATACACACCATTTTCCCCCCTAA
TGGCATGAATCTGTATAAGAACAGCCACAGTGAAAGCAGTAGTAACAGGAGCTACAGAGACAGTGGTATTCCAGATTCA
GATCATTCACACTCATGAT
CitationTomás AR, Certal AC, Rodríguez-León J. FLRT3 as a key player on chick limb development. Dev Biol. 2011 Jul 15;355(2):324-33.
CommentsProbe for flrt3 was obtained from chicken EST ChEST840j5.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 11
Ear/Otic Placode
Somites
 
13-18
stage 14
stage 14
Lateral Plate Mesoderm
Limb Buds
Somites
 
19-24
stage 19
stage 19
stage 19
stage 19
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 23
Eye
Leg AER
Limb Buds
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Somites
Wing AER
Wing Mesenchyme
AER
25-29
stage 29
Wing AER
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.50441

Mouse

EmageMGI:1918686
EurexpressMGI:1918686
MGI GXDMGI:1918686

Frog

Xenbase490900

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-1988
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