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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXF1
forkhead box F1

The human orthologue of this gene is associated
with the following human disease:

Alveolar capillary dysplasia with misalignment of pulmonary veins

Gene

Official Symbol	FOXF1
Official Full Name	forkhead box F1
CGNC ID	49408
also known as	forkhead box protein F1\|forkhead transcription factor
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_414186
Polypeptide	XP_414186

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	38766			FBgn0045759
Human	2294		MIM:265380	MIM:601089
Mouse	15227	ENSMUSG00000042812	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:1347470
Xenopus	734087, 399398, 735218			478921
Zebrafish	566407	ENSDARG00000015399	ZDB-GENE-050419-153	ZFIN:ZDB-GENE-050419-153

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395624
Ensembl Gene	ENSGALG00000005728
KEGG	gga:395624

Entry 1

GEISHA Id	FOXF1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCTGGAAAAACTCCGTTCGC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGGCTTGATGTCCTGGTATGTCACTTG	cDNA Template Length	846
Forward cDNA Template Probe	show AACATGGTGGTGCTGNTGGGGTATAGGACCGCTGCCCGCTGATGCATGGAGGAGGAGGCCATGGCGTTGAAAGAGAAGA CGAATTCCTTTCTGTCGCACATGCTCGGAGACTGGGAGTGATACCGCGGGATGCCTTGAAGCTCGGCGGTGTTGTGGCT GTTCTGATGCAGGTAGGGCTGATCGAGGGAATGCGTGGAAAGGCTGGAGGACAGCGGGTTGGCCGCGGGGTTGCAAGGC GACAGCGGCTGCTGCTTGATGTAGGAAGCTCCCGTGTTTAAGGCGGCCGAGGCGGAGGGAGCCCACGCAGAGGCCGAGC TGGAGTAAACCGAGTGCGGTTCCATCACCCCTCCGCCGGGCAGCAGCGGGGAGGCGGGCACGGAGCTCTCGTGGTGCGG GTAATCCCCCGCCGAGGAGCCGCTGCAGCTGCCCATGTAGGAGTGCCCGCCGTTGGAGGGCAGGTGGGGCACGGAGTGT CCCGCAAGGCCCATCCCGTCCACGTTGCCGGCTAAGTGGCCGTTCATCATGCCCAAACCCCCTTCAAGGGAGAGGCTGT TGGGAGGGCAGGATAACCCTCCGGCCCCACCCCTGGTATCCTATAACTGTTCGGGAGGTTTTTTAAATTAACCCCATTT ATCTAACTATACGTGGGCTTTCCCCCCTGTTATTTCCTTTCGAATTTTACTCTCCGGGAGTAAAAACATCCCCTAAAAA AAATAACTCTGCTGTCTTGGTCAGAGGGTGGTTTCCCCCACTTAGCAGAGCCGGCCCACCTGTTCGTATTACTAAATAA TTCTTCATTAAGAGACAGTGGCGCCTTAGAAGATTCATAAAAAAAACNNNNNNNCCTTCTCTCCTTGCACACTCTTTCC TCTGCATGATACCCTTCTTTAGACCTATCCCCTATTCCGTGTTTCCATTTTTCTCTTCTTGTACCCAACCTCTGTCTTT GCTTTATGCATCCGATACCCTTCCGATTTTACGCTTATGTCTCATTCTTATACACTACCCCTGTGACGCCGTATATATA TTACCTTTTCGTAATCTCTTACGCACCTTTATTTTTTCATTATTTTCATTCCAGCGCATACAATTCCTGTAATTTTAAT AGCCAATTGTGTAGAATTTCTCCTGAGCATGCCTTCCCCTTGGAAATACTCATTTTTATCGTAACTCAACGCATCCTTT CCCCTTACGTACAGCTTCCACGCGTACTCAGACTCAACGCTGCCTTACGACTTGTACACCTTACATAACTTAGGTGTAA TTAGCTCCTATACCCTCATCGGCGAGCTTGATTGCTCCTCCTGCTCTTACTCCCTATTTCTCTCGGCGCATACTATCTC AATATATATCTCCTTAGCGCGCTTTCACATAACCTTTCAATTGTTATACTAGTATCCGGCGACTAAGATCTACCAATAG ATATTCGTGCAACCATATGTCACTGATAGAACGA

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 9

stage 10

Blood Islands
Blood Vessels
Endoderm
Extraembryonic
Headfold
Lateral Plate Mesoderm
Oral Pharynx

13-18

stage 16

stage 18

Endoderm
Gut
Lateral Plate Mesoderm
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome

Dorsal view.
Ventral view.

19-24

stage 22

stage 23

Allantois
Endoderm
Gut
Oral Pharynx
Sclerotome

Section taken between the limbs.

stage 25

Gut
Oral Pharynx
Sclerotome

Entry 2

GEISHA Id	FOXF1.Wilm.2004	Data Source	Publication
Complete cDNA Template Probe	show ATGGAGATCGGTAATGGAGGGATCCAGGCGGGGCCGGGCGGGGTGCGGACGCAGGGAAGCCCCTCGCTGTCCCCGTTTC TCTCCAGGGCACGTCGGGGAAATGGAGGTGATTCCCAGCGCTCGAAAGGCTCGGAGGAGCGAAATGTTTTGCAGGCACC GAAGTTCCCGTGTTACCTCTCACCCACCGGAATCGAGATCTACCAGTTCTTATAGAGCCGCTTCCCTTTCTTCCGCGGT TCTTACCAGGGCTGGAAAAACTCCGTTCGCCACAACCTCTCGCTCAACGAGTGTTTCATTAAGCTGCCCAAGGGGTTGG GCCGCCCGGGTAAGGGCCACTACTGGACCATCGACCCGGCCAGCGAGTTCATGTTCGAGGAGGGCTCGTTCCGCCGCCG GCCCCGAGGCTTCAGGAGGAAATGCCAGGCGCTGAAGCCCATGTACAGCATGATGAACGGGCTCAGCTTCAACCACCTC CCCGACAGCTACAGCTTCCAGGGCTCGGCCGGAGGGCTCTCCTGCCCTCCCAACAGCCTCTCTCTCGAAGGGGGTTTGG GCATGATGAACGGCCACTTAGCCGGCAACGTGGACGGGATGGGCCTTGCGGGACACTCCGTGCCCCACCTGCCCTCCAA CGGCGGGCACTCCTACATGGGCAGCTGCAGCGGCTCCTCGGCGGGGGATTACCCGCACCACGAGAGCTCCGTGCCCGCC TCCCCGCTGCTGCCCGGCGGAGGGGTGATGGAACCGCACTCGGTTTACTCCAGCTCGGCCTCTGCGTGGGCTCCCTCCG CCTCGGCCGCCTTAAACACGGGAGCTTCCTACATCAAGCAGCAGCCGCTGTCGCCTTGCAACCCCGCGGCCAACCCGCT GTCCTCCAGCCTTTCCACGCATTCCCTCGATCAGCCCTACCTGCATCAGAACAGCCACAACACCGCCGAGCTTCAAGGC ATCCCGCGGTATCACTCCCAGTCTCCGAGCATGTGCGACAGAAAGGAATTCGTCTTCTCTTTCAACGCCATGGCCTCCT CCTCCATGCATTCAGCGGGCAGCGGCTCCTATTACCACCAACAAGTGACATACCAGGACATCAAGCCGTGCGTTATGTG A
Citation	Wilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_414186).