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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXI1
forkhead box I1

The human orthologue of this gene is associated
with the following human disease:

Enlarged vestibular aqueduct

Gene

Official Symbol	FOXI1
Official Full Name	forkhead box I1
CGNC ID	1498
also known as	forkhead box protein I1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI

Sequence Information

Genomic
RNA	XM_425185
Polypeptide	XP_425185

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2299	ENSG00000168269	MIM:600791	MIM:601093
Mouse	14233	ENSMUSG00000047861	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:1096329
Xenopus	394546, 380059			494124
Zebrafish	387258, 353313	ENSDARG00000009550, ENSDARG00000019659	ZDB-GENE-031126-4, ZDB-GENE-030505-1	ZFIN:ZDB-GENE-031126-4, ZFIN:ZDB-GENE-030505-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	427613
Ensembl Gene	ENSGALG00000002105
KEGG	gga:427613

Entry 1

GEISHA Id	FOXI1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TACGTGGCTGACAACTTCCC-3’
Reverse cDNA Template Primer	5’-ATTAACCCTCACTAAAGGCGTGGAGTGCTTGTGACTTG-3’	cDNA Template Length	841
Complete cDNA Template Probe	show TACGTGGCTGACAACTTCCCATTTTACAACAAAAGCAAAGCTGGCTGGCAGAACTCAATTCGGCACAACTTGTCTCTCA ACGATTGTTTCAAGAAGGTGCCTAGAGATGAAGATGATCCAGGAAAAGGGAATTACTGGACTCTGGACCCAAACTGTGA AAAGATGTTTGACAATGGCAACTTTCGCAGGAAGAGGAAAAGGAAGTCTGATATTGGGGCTAGTTCTGCCCATCTGACA TCTGAGAAATCCGAGGACAGTGCCTTGACTGGCAGCCCCAAAGCTGTGGAGCATCAGGATCTTTTGGAAAACTCTTCAT CTGGGACTGACAATCCACCCGATAAAGGATCTCCACCTCCATCTTCCAGTAGCCCATGCCTTAGTAATTTCATTTCCAG TATGACTGCATATGTTAACGGCTCTAATTCAGTGGGCCGCTCAGTGCCATTGGGACTTAATGCTGAACCCACTGACAAA ATGGGACAGAATATGGTAGGCTTAAATTCCTACTCTCCACTCTCTAATGTCCCCAGTCACGGTGTGGGAGAGTGGTCCA ATTCTATGCCTCCTAGTCACCTTGGCTATAGCAATTCAGTGCTCAACCAGTTTAACACCCATTTTTACAGTAGTATCAG CACAAATAACACTCTGTTTTCCAGGGAGGGGACAGAGGTTTAAATAAGAGATCATAAGACATCAAAATATAGCTATTTA TGAGAGGGAGTGACCTGTGGGTGGATGATTATTGTTAGTCTGTTGTCTCTAGGACCTGCATTGCATCCTACCTTCTGAC AGCCCCAAACGTTTTAGCTGTTGTCCTTACTCAAGTCACAAGCACTCCACG

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 16

Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites

19-24

stage 19

stage 20

Allantois
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Mesonephros
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

25-26

stage 26

Widespread Expression

Entry 2

GEISHA Id	FOXI1.Freter.2012	Data Source	Publication
Complete cDNA Template Probe	show GATGCACCTGTCTCAGGAAAGGAGCACTAGCACAGGTGTGTCATAACTTATCAGCTGCCTGTGTTAGAGCATGAGCTCC TTTGATCCACAAACGCACTCTCCACCACGCTGCAGCCCACAATTTCCAAATATCGGTCAAGAACCTCCAGAAATGAATA TCTACTATGAGAACTTCTTCCACCCACAGAATATTCCTAGTCCGCAGCGACCGAGCACCTTTGAGACAACGGACTACAA CAGCACACCTAATCCTTACCTCTGGCTAAACGGACCTTCCATTACTCCACCACCGTATCTCCCGGGATCCAATGCCAGT CCCTTCATTCCTCAGTCTTATGGGATGCAAAGGCAGCTCCTGCCTAACATGCACGGCTTGGGAGGAACTGATCTTGGCT GGCTTCCTCTTCCATCCCAAGAAGAGCTTATGAAGTTGGTTAGACCACCTTACTCCTACTCTGCACTTATTGCCATGGC TATCCACGGAGCACCAGAAAAGAGGTTGACTCTCAGTCAGATCTACCAGTACGTGGCTGACAACTTCCCATTTTACAAC AAAAGCAAAGCTGGCTGGCAGAACTCAATTCGGCACAACTTGTCTCTCAACGATTGTTTCAAGAAGGTGCCTAGAGATG AAGATGATCCAGGAAAAGGGAATTACTGGACTCTGGACCCAAACTGTGAAAAGATGTTTGACAATGGCAACTTTCGCAG GAAGAGGAAAAGGAAGTCTGATATTGGGGCTAGTTCTGCCCATCTGACATCTGAGAAATCCGAGGACAGTGCCTTGACT GGCAGCCCCAAAGCTGTGGAGCATCAGGATCTTTTGGAAAACTCTTCATCTGGGACTGACAATCCACCCGATAAAGGAT CTCCACCTCCATCTTCCAGTAGCCCATGCCTTAGTAATTTCATTTCCAGTATGACTGCATATGTTAACGGCTCTAATTC AGTGGGCCGCTCAGTGCCATTGGGACTTAATGCTGAACCCACTGACAAAATGGGACAGAATATGGTAGGCTTAAATTCC TACTCTCCACTCTCTAATGTCCCCAGTCACGGTGTGGGAGAGTGGTCCAATTCTATGCCTCCTAGTCACCTTGGCTATA GCAATTCAGTGCTCAACCAGTTTAACACCCATTTTTACAGTAGTATCAGCACAAATAACACTCTGTTTTCCAGGGAGGG GACAGAGGTTTAAATAAGAGATCATAAGACATCAAAATATAGCTATTTATGAGAGGGAGTGACCTGTGGGTGGATGATT ATTGTTAGTCTGTTGTCTCTAGGACCTGCATTGCATCCTACCTTCTGACAGCCCCAAACGTTTTAGCTGTTGTCCTTAC TCAAGTCACAAGCACTCCACGTGTGGCAGCTCCATATAAAAATGGAGGGATTTTAACAGCAAGAGTAGTGAAAGATAGT GTTTTAGCAAGAATAGTGGAGATTGTGTTTGTACTGCTACCAACCATGGTCCCCTGTGGACATCCTTGAGAGGAGTTAC TGTTTACCTTAGGGATTAAACTTTCTGGCGTGGCACTAGTTTTGCTATGATGCTTTTAAAGCACTAATATATATTTGGC TATATCTGTAAATCACCTCTCTTGCTGATACAGGCTGTCTGTACTAGAGATTCTTGGTAAGTTCTTATTTGGACAAAGC TATTCTGAGACACTGAAGGACCTATAGCAAAAACTACTACATAGTGAATAATAACTAGCAGAGGATGAGTGAATGCCCT CTTTAAATGTCTCTAATACTAGAGCATACGTTGCCTCAAGTCTGATGCTATTTCTCCCCTAAGGGGAATGTGGTTGTGA AGCAGGCTAGCATCATCAGGGACACAACATTCACTTTGAAACTGAAACAAAGCATAGGAAAATACAATGGAGTTGCCTT CTGCTGGTGCAATCAGATCTTTGTGTTTTAAATTCTAAGTGCAGGGTCAGATTTTGTGGAAAACGTCTCTGTACCGTAT ATTTTCCTTCTTTTTGTAACAAAGTCCATGCAATTGTTTTGTCATTGTGTAAATATTAGGAATAATTCTTATTTTTTTA TATTCTACTGTAACCACAAACAAAAATTCAAATAAATGAAGTTTTTTCAAACCAATAATTGAATCAAGTTTCATATTTA TGTAAAATAATGTCTGTAGAGATATTATGCAACATATGTAGGCACCATGTTTTACTGGTATTTACCTGTACACAGCTGT GCACTGATGAGACTTCCAGAATGATGGAAAACATATTAATGCACTGTAATAGCTACTACTGCTTTGTCTTGATTTTTTT TTTTTTTTAACTCTACATGATATAGTTTTGTTACAGGCCACCCCAGAAACATTTTTAATAAAGAATTTGTATATACGCA TGTGTGTGTACTATACTTCTTACATCTTTAAAAGCCTCCTCAATAGTTTGACTTGTGCAGTTAGCCTGAGGAAAACCTA GGGAAATATTCAAGTAAGGAGTGAGACAGTATATGTCTAGAGAATCACAATTTGCATGCCTGAGGAATACAATTGGCTG CTAT
Citation	Freter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (XM_425185.6).