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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXI3
forkhead box I3

Gene

Official Symbol	FOXI3
Official Full Name	forkhead box I3
CGNC ID	53468
also known as	forkhead box protein I3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_426357
Polypeptide	XP_426357
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	344167			MIM:612351
Mouse	232077	ENSMUSG00000055874	All phenotypic alleles (2):Targeted, other(2)	MGI:3511278
Xenopus	549298, 496395, 494806			982121
Zebrafish	387256, 387258, 387257	ENSDARG00000069715, ENSDARG00000009550, ENSDARG00000055926	ZDB-GENE-031126-2, ZDB-GENE-031126-4, ZDB-GENE-031126-3	ZFIN:ZDB-GENE-031126-2, ZFIN:ZDB-GENE-031126-4, ZFIN:ZDB-GENE-031126-3

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428801
Ensembl Gene
KEGG	gga:428801

Entry 1

GEISHA Id	FOXI3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-ACAACCTCAGCCTCAACGAC-3’
Reverse cDNA Template Primer	5’-ATTAACCCTCACTAAAGGCCATTCCCTTTGCAGCACTG-3’	cDNA Template Length	677
Complete cDNA Template Probe	show ACAACCTCAGCCTCAACGACTGCTTCCGCAAGGTGCCCCGTGACGAGGACGACCCCGGAAAAGGAAACTATTGGACCTT AGATCCCAACTGTGAGAAGATGTTTGACAACGGGAACTTCCGGCGCAAGCGCAAGCGACGCTCAGAGCCCAACACCCCC GCGACCACGGCTGCGGCCTCCTCGCTCGGGGGCCTGAAGGCCGAAGAAGAGCGACCCATCCCAGCCGCAGGCAAACCTT GTGGAAACAGCCCACCCCCAGAGCTGGACCCATCGCCTTCTGCCAGGGACCATCCCAAAAGCTCCTCTCCCTCCGGTAT CATTTCATCCACCCCGAGCTGCCTCAGCACCTTCTTCAGCGGCATGAGCTCGCTGAGCGGCGGAGGCAGCCGGCTGACG GGGGGGCTCAGCACTGACCTGCATCACAGGAACTTCTCTGCTGGACAGCTGAGCAGCGGCACTTTCACCCCTTCCAGCA GCTCATCTCAGGAGGTGCCTTCACCAGAACAGCTGCAGCGAGTGGCGGGACCTTCCCCTGCCTACTACAGCTCCTTCCA TCCCAGCAGCGGCAGCCAGGGCGCCCAGTACAACCACTACTACAACTTCACAGTCAACAGCCTCATCTACACCCGAGAT GGAACGGAGGTGTAGGACGCCGGGGCAGTGCTGCAAAGGGAATGG

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

stage 10

stage 12

Ear/Otic Placode
Ectoderm
Pharyngeal Arches and Clefts
Unlabeled

trigeminal region

13-18

stage 17

stage 18

Eye
Hindbrain
Pharyngeal Arches and Clefts

19-24

stage 22

stage 23

stage 24

Eye
Pharyngeal Arches and Clefts

Entry 2

GEISHA Id	Foxi3.Khatri.2013	Data Source	Publication
Complete cDNA Template Probe	show TGAGCAGCGGCACTTTCACCCCNTTCCAGCAGCTCATCTCAGGAGGTGCATTCACCAGAACAGCTGCAGCGAAGTGGCG GGACCTTCCCCTGCCTACTACAGCTCCTTCCATCCCAGCAGCGGCAGCCAGGGTGCCCAGTACAACCACTACTACAACT TCACAGTCAACAGCCTCATCTACACCCGAGATGGAACGGAGGTGTAGGACGCCGGGGCAGTGCTGCAAAGGGAATGGGA GATGCAGGTGTGTGCGTGGCAGCATGGAGGACCGTGTGCTTTTGCAAACAGCATTTCAATGTGGACGCTTCCCGGGAGT TCGTTCAGGAAAGACAGATCTTCTCACCTTTCCAAGCAAAAACACCCCACAAACACCAGCAAAAGGCAGATGCAAAATC TTTTCCCCTGAGCTTAGTACCAAAGATAACTCTAGCCTTGCAGCTTCAGCACGAGAATAAACACTGGGGTATTTTTATA CATATTTGTATGTAATGTAACTCTCCTGTACATACGTTTCTATGTGGTTTTATATTTGTAAATTATGCTCTGGAGCTGT ACTTATTTATAATGTTTTCAACTTGGTTAAAGTTTATTTTACTCCGTTTCCCCCTTCTTGTNGTGTAGTGTAGTGTTCG GTGGTTTGATTATTTCTGTGGGTTAGTTTGTTCGTTAGCGCATTAATAAAACTTTTCAGGCTGAACAGCTGNTGGGAAT AAAACGTTAACACGCCTAAAAA
Citation	Khatri SB, Groves AK. Expression of the Foxi2 and Foxi3 transcription factors during development of chicken sensory placodes and pharyngeal arches. Gene Expr Patterns. 2013 Jan-Feb;13(1-2):38-42. DOI: 10.1016/j.gep.2012.10.001. Epub 2012 Oct 31.
Copyright	Copyright © 2012 Elsevier B.V. All rights reserved.
Comments	Authors indicated that cDNA probe for chicken Foxi3 was obtained from the UMIST Chick EST Repository (clone ID ChEST50h20).