GEISHA - A Chicken Embryo Gene Expression Database
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FOXJ1
forkhead box J1

Gene
Official SymbolFOXJ1
Official Full Nameforkhead box J1
CGNC ID14612
also known asforkhead box protein J1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_001233326
PolypeptideXP_001233327
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2302ENSG00000129654MIM:607154MIM:602291
Mouse15223ENSMUSG00000034227All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:1347474
Xenopus493505, 734957, 496834, 399038, 399039919737, 853647
Zebrafish767737, 494105ENSDARG00000059545, ENSDARG00000088290ZDB-GENE-060929-1178, ZDB-GENE-041212-76ZFIN:ZDB-GENE-060929-1178, ZFIN:ZDB-GENE-041212-76
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene770009
Ensembl Gene
KEGGgga:770009

Entry 1

GEISHA IdFOXJ1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-TGGCAATGAGTACCTGTCCG-3’
Reverse cDNA Template Primer5’-ATTAACCCTCACTAAAGGGAACGGTGCTGACATTGACG-3’cDNA Template Length886
Complete cDNA Template Probeshow
TGGCAATGAGTACCTGTCCGGCTCTGTCAGCATGGAGCAGCTGTTTGAGCTCGGTGACACCTCGCTGCCCGCAGACGTC
AACGAATGGAGCGCTGTGGGATCCTTTCTATAAGCAAAGGACCGAACCAAACCCATGGGGGCTTTGGGAGGACGCTCCC
TTTGTGCTGCTGGAACTTGCAATGGACAATATTTTCTACGGACAGACTCCCCCAGCAGCTTGATCAGCTTCATGGTAGG
GTTTATTCATAGACACACCAATGGGGAGAACACAGTAACACAAAAAATTGCTTGAAATATCTTCAAAGGACACACCAGA
AGCCCGAGGTCCACCGCTTTCCTCAAGAGAAGAGGTAGAACAGTACTTATTTTTTTACTTTTTCAGGAACAAAATGTAC
ATTCCCACTTTTCCTTGCATGGAAATGGACACGGCATACAGTCCTCCTCTGCAGACCCAACAGACAAGATTCCTGGTGG
CTTCGGACTCCATAGACGACGTGCAATCTTCTCACTCCTTCTTCTCTCTGTTCTTCTCTCTCTTTCTGTCCGGGTTCGT
TTGTAGGTGTAGCTAATTAGTTAGCAGGCAAACAGAGTCCCCTCTGGATTCTCCAAGTTCAACCTCCCTCCTGACTTGT
GCCTGGGGAAGAAGGAAAGATCCGTGCATTCAGTCTGCCTCTTTAGATGTTTTTATATAATCTATTATATATTATATAT
TCAAAGAAACCTATATTTTTAGCATTAGGACCTCTTTTCAGAGTGGGGTAGGGGAAATGTAGGTTGGGGTTGTTTTGTA
CTTGGGCTTATGTTAGTCGTTCTGCAAACCAAGACCTGCACAGTGGCTTTGGTCAGCATTGGGTCACCCAACTCCACGT
CAATGTCAGCACCGTTC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Unlabeled
 
13-18
stage 17
Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
 
19-24
stage 19
stage 20
stage 20
Forebrain
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Unlabeled
Wing Mesenchyme
 
25
stage 25
Forebrain
Head Mesenchyme
Hindbrain
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 2

GEISHA IdFOXJ1.Cruz.2010Data SourcePublication
Complete cDNA Template Probeshow
ATGGCTGAGGGCTGGCTGAGCCTGCGGGCGGCCGAGGGGCAGCAGGGCGGCATGGGCGACTCGAGCAACCTGGACGACA
GCCTGACCAGCCTGCAGTGGCTGCAGGAGTTCTCCATCATCAACGCCAACGTGGGCAAATCCTCCTCGTGCCCCAGCGG
CCCCGATCCTCACGATTGCCACCACGTCCCCGGCTTCGCCGCTCCGTGCTCGCCCCTGGCGGCCGACCCGGCGTGTATG
GGGATGCCCCACACCCCGGGCAAACCCACCTCCTCCTCCACCTCGAGGACGGCACACCCGGCTTTGCAGGCTCAGCCGC
CCGAGGACATCGACTACAAGACCAACCCGCACGTGAAGCCGCCCTACTCCTACGCCACTCTCATCTGCATGGCGATGGA
AGCCAGCAAGAAGACCAAAATCACCCTGTCCGCCATCTACAAGTGGATTACCGACAACTTCTGCTACTTCCGACACGCC
GACCCCACCTGGCAGAACTCCATCCGACACAACCTGTCCTTGAACAAGTGCTTCATCAAAGTGCCCCGCGAGAAGGACG
AGCCGGGGAAAGGCGGCTTTTGGAAGATCGACCCTCAGTACGCCGACCGGCTGATGAACGGGGCCTTCAAGAAGCGGCG
GATGCCCCCGGTGCAGATCCACCCGGCCTTCACCAACAGGGCCCAGCACCAAGCGTGCGGCGTCGGCGGGCCGCTGCCT
TCCAGCTGCGCCAACAGCAACGTCCTCAACGTCAACACGGAGTCCCAGCAGCTGCTGAAGGAGTTTGAAGAGGTCACCG
GAGAGCAGAGTTGGGATGGGAAGAGCGGCCGCAAGCGCAAGCAGCCCTTACCCAAACGCACGGCCAAGGCGGCCCGGCT
GCTCAACACGGCCCTGCTCACCCAGGAGGAGCAGACCGAGCTGGGCTCGCTGAAGGGCAACTTCGACTGGGAGGTTGTC
TTTGACACCAACCTCAATGGAGATTTCACCACGTTTGAGGAGCTGGAGCTCACGCCGCCCATCAGCCCCATTGGGCGTG
ATGTTGACCTGACGGGCCACGGATACCACGACGGTGCACAGGAGTGGTGCGTGGCCGGGCCCGAGCAGCCCCTCACCGA
GCCCAACCACAACAACCTGGACTTTGACGAGACCTTCATGGCCACCTCCTTCCTGCAGCACCCCTGGGATGACGATGGC
AATGAGTACCTGTCCGGCTCTGTCAGCATGGAGCAGCTGTTTGAGCTCGGTGACACCTCGCTGCCCGCAGACGTCAACG
AATGGAGCGCTGTGGGATCCTTTCTATAA
CitationCruz C, Ribes V, Kutejova E, Cayuso J, Lawson V, Norris D, Stevens J, Davey M, Blight K, Bangs F, Mynett A, Hirst E, Chung R, Balaskas N, Brody SL, Marti E, Briscoe J. Foxj1 regulates floor plate cilia architecture and modifies the response of cells to sonic hedgehog signalling. Development. 2010 Dec;137(24):4271-82.
CopyrightCopyright retained by the authors. Permission to reprint the images has been requested.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_001233326).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
stage 22
Neural Plate/Tube
 

Mouse

EmageMGI:1347474
EurexpressMGI:1347474
MGI GXDMGI:1347474

Frog

Xenbase919737, 853647

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060929-1178, ZDB-GENE-041212-76
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