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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXO1
forkhead box O1

The human orthologue of this gene is associated
with the following human disease:

Rhabdomyosarcoma, alveolar

Gene

Official Symbol	FOXO1
Official Full Name	forkhead box O1
CGNC ID	49093
also known as	FOXO1A, forkhead box protein O1\|forkhead box O1A
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204328
Polypeptide	NP_989659

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2308	ENSG00000150907	MIM:268220	MIM:136533
Mouse	56458	ENSMUSG00000044167	All phenotypic alleles (11):Targeted, knock-out(4) Targeted, other(7)	MGI:1890077
Xenopus	493378, 444991			482527
Zebrafish	567969, 768121	ENSDARG00000061549, ENSDARG00000063540	ZDB-GENE-080425-3, ZDB-GENE-061013-59	ZFIN:ZDB-GENE-080425-3, ZFIN:ZDB-GENE-061013-59

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374231
Ensembl Gene
KEGG	gga:374231

Entry 1

GEISHA Id	FOXO1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-AACCCAGTCGTCATCTGCTG-3’
Reverse cDNA Template Primer	5’-ATTAACCCTCACTAAAGGTCCATGTCACAGTCCAACCG-3’	cDNA Template Length	681
Complete cDNA Template Probe	show AACCCAGTCGTCATCTGCTGCCCTGATGCAGCAAACACCAGGTTACTCATTTGCATCTTCAACAACAAGTATATGTTCA CCAAATCCAGACTACAGGAAATTTACGTATGCTCAAGCTAGCATGAACTCTTTGCCCCAAATTCCTATGCAGACTCTCC AAGACAGTAAATCAAGCTATGGATCGATGAGCCAATTTAACTGTCCTGCAGGACTTTTGAAGGAGTTACTGACTTCTGA TTCTCCTCCGCATAATGATATCTTGGCATCAGTAGACACTGGTGTTTCCCAGGCTGGTGGCAGGGCGCTGGGCCAAGGT GTACTGATGGTCACTAATTCAGTGATGCCAACTTATGGCAATCAGCCACCTCACAACAAAATGATGAACCCTAACGCCC GTCCTCACCAAGGACATAACCAGCCAACACCTGCAGTTAATGGCCGTGCCTTGTCACACACAGTGAACCCCATGTCACA TACTTCATGTCTAAATCGCTTGTCGACAGTGAAGACTTCATTACAAGTGCCTATGAGTCACCAGATGCAGATGAATGCT ATGAACCCGTATGCCCCTGTTAACAGTTGCAACGGCTACGGAAGGGTGGGAATTGTTTCCCTCCACCAGGAGAAGCTTC CCAGTGACTTAGATGACATGTTAATTGAACGGTTGGACTGTGACATGGA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 16

Widespread Expression

19-24

stage 20

stage 21

Atria
Foregut
Head Mesenchyme
Leg Mesenchyme
Liver
Lung
Mesonephros
Myotome
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Spinal Ganglia and Nerves
Ventricles
Widespread Expression
Wing Mesenchyme

stage 25

Atria
Foregut
Lung
Mesonephros
Myotome
Outflow Tract
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Ventricles
Widespread Expression

Entry 2

GEISHA Id	FOXO1.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show CTGGACAACAGTTTTTGTGCTGGCAGAAGAAAGAGAGAAAAACGTATTTTCACTGATTATTGTTTTGTCTACGACGCTC ACAATTGGAAAATGTTCTAATTGAAACTCTGCTTCCCTGTAGTGATGCTGTATGGTGGAGAAAGAAATGGGATGTGCCA AGAAAATGAGGTTCAGTAATAAGCCATATATTTAATTATCCTGTTATGACTTTCCTAAGACTCTGCAATGCATCCACTG ATGTGCTAGCATTTAGCACCCTGTTGGGCTTAAATCACTACTAACTACAGCTACTTTTTAGATATCTAATTACAGTTGT CAGCAGTTCCAGGGGTTGACGTTAAGCTGTCCTGTGATATGGGATCTCCCCCAGTGTGATAGTGGTCTTTGAACTGTTG AGCATTAAATGTTTGTGGTGCTGAAGCCTCAGCAAAACAGCCTGCTTTTACGGCCAAAAACTTCAACTAGCATCATCAC CATCAACTTCACAGTCTCTGAGAGTTGATAGTAAACCCTGGCAATGGGCTTACACACAAGTTTCTGAGGATCTTTCTTT CTGCTGCATGTGCAAAAACGTTTGTTTCCAAATGGGGATTGATAGTGCAGTCCAAGCTAGGCACAAAATCCACCTCTGT GCACAAGGAAAGCAGTACTTAACTGTAAGCTCCATGGGGTTGCAGCTAAACATGCTACATTTAACAATATACCTCCTGT TTATTATTTACTGCTACTGTACAAACTCCTAGATACAGGTATTTTCTTCCTTTCCTTTTATAACTATGAATATCATAAA TGTAGCTGTCCCCGAGTTACAACCCTCTGTAGGAAGCCCCTTTTAATTACTGAGAGAAAACAGTTGTAGATAATCAGAG GTTTTGGGTCATGCGGTCGAATTTACTNTCTTTTGCATGGTGCCATTCAAATATTTTGCAATTGTAATTCTGGAATACT GTGAAGTCTGATGANGGGCATGTTGNCTGCCTTTGAAAGCAAACATTTNGCNAACCCCNGGGTAATAAATCCCTTTTTC AGTAAAAANGTACCCGAGTTTNCTGGNAGTAANCTTAAGTTTGGTCNNAAATTGTTTGNAAANTGANTTGGGTTNGGTG AAATTGTGGCCGGATGA
Comments	Images and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST232b16.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Widespread Expression

Entry 3

GEISHA Id	FOXO1.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show CATTGGACAAACAGTTTTGTGCTGGCAGAAGAAAGAGAGAAAAACGTATTTTCACTGATTATGTTTGTCTACGACGCTC ACAATGGAAAATGTCTAATGAAACTCTGCTTCCCTGTAGTGATGCTGTATGGTGGAGAAAGAAATGGGATGTGCCAAGA AAATGAGGTTCAGTAATAAGCCATATATTTAATTATCCTGTTATGACTTTCCTAAGACTCTGCAATGCATCCACTGATG TGCTAGCATTTAGCACCCTGTTGGGCTTAAATCACTACTAACTACAGCTACTTTTTAGATATCTAATTACAGTTGTCAG CAGTTCCAGGGGTTGACGTTAAGCTGTCCTGTGATATGGGATCTCCCCCAGTGTGATAGTGGTCTTTGAACTGTTGAGC ATTAAATGTTTGTGGTGCTGAAGCCTCAGCAAAACAGCCTGCTTTTACGGCCAAAAACTTCAACTAGCATCATCACCAT CAACTTCACAGTCTCTGAGAGTTGATAGTAAACCCTGGCAATGGGCTTACACACAAGTTTCTGAGGATCTTTCTTTCTG CTGCATGTGCAAAAACGTTGTTTCCAAATGGGGATTGATAGTGCAGTCCAAGCTAGGCACAAAATCCACCTCTGTGCAC AAGGAAAGCAGTACTTAACTGTAAGCTCCATGGGGGTTGCAGCTAAACATGCTACATTTAACAATATACCTCCTGTTTA TTATTTACTGCTACTGTACAAACTCCTAGATACAGGTATTTTCTTCCCTTTTCCTTTTATAACTATGAATATCATCAAT GTTAGCTGTCCCCCGAGTTACAACCCTCTGTAAGGAAGCCCCTTTTAATTACTGAGAGAAAACAGGTTGTCGATCACTC AGAGGGTTGGGGTCAATGCGGGCGAATTACTTTCTTTTGCTGGTGCCATCCAATATTTGCACTTGTATTCCGGAATACG TGGAGCTGATGAGGGCTGGTTGTTGCCTGAAAAGCAATTATGGAC
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Unlabeled

all

Entry 4

GEISHA Id	FOXO1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CATTGGACAAACAGTTTTGTGCTGGCAGAAGAAAGAGAGAAAAACGTATTTTCACTGATTATGTTTGTCTACGACGCTC ACAATGGAAAATGTCTAATGAAACTCTGCTTCCCTGTAGTGATGCTGTATGGTGGAGAAAGAAATGGGATGTGCCAAGA AAATGAGGTTCAGTAATAAGCCATATATTTAATTATCCTGTTATGACTTTCCTAAGACTCTGCAATGCATCCACTGATG TGCTAGCATTTAGCACCCTGTTGGGCTTAAATCACTACTAACTACAGCTACTTTTTAGATATCTAATTACAGTTGTCAG CAGTTCCAGGGGTTGACGTTAAGCTGTCCTGTGATATGGGATCTCCCCCAGTGTGATAGTGGTCTTTGAACTGTTGAGC ATTAAATGTTTGTGGTGCTGAAGCCTCAGCAAAACAGCCTGCTTTTACGGCCAAAAACTTCAACTAGCATCATCACCAT CAACTTCACAGTCTCTGAGAGTTGATAGTAAACCCTGGCAATGGGCTTACACACAAGTTTCTGAGGATCTTTCTTTCTG CTGCATGTGCAAAAACGTTGTTTCCAAATGGGGATTGATAGTGCAGTCCAAGCTAGGCACAAAATCCACCTCTGTGCAC AAGGAAAGCAGTACTTAACTGTAAGCTCCATGGGGGTTGCAGCTAAACATGCTACATTTAACAATATACCTCCTGTTTA TTATTTACTGCTACTGTACAAACTCCTAGATACAGGTATTTTCTTCCCTTTTCCTTTTATAACTATGAATATCATCAAT GTTAGCTGTCCCCCGAGTTACAACCCTCTGTAAGGAAGCCCCTTTTAATTACTGAGAGAAAACAGGTTGTCGATCACTC AGAGGGTTGGGGTCAATGCGGGCGAATTACTTTCTTTTGCTGGTGCCATCCAATATTTGCACTTGTATTCCGGAATACG TGGAGCTGATGAGGGCTGGTTGTTGCCTGAAAAGCAATTATGGAC
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.