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A chicken embryo gene expression database

	Anatomical Location
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	Gene Name
	GEISHA ID
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HMX1
H6 family homeobox 1

The human orthologue of this gene is associated
with the following human disease:

Oculoauricular syndrome

Gene

Official Symbol	HMX1
Official Full Name	H6 family homeobox 1
CGNC ID	11629
also known as	GH6, homeobox protein HMX1\|homeo box (H6 family) 1\|homeobox (H6 family) 1\|homeobox protein H6
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205533
Polypeptide	NP_990864

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3166	ENSG00000215612	MIM:612109	MIM:142992
Mouse	15371	ENSMUSG00000067438	All phenotypic alleles (3):Spontaneous(1) Chemically induced(1) Targeted, knock-out(1)	MGI:107178
Xenopus	100498485			6259138
Zebrafish	797503	ENSDARG00000095651	ZDB-GENE-080204-54	ZFIN:ZDB-GENE-080204-54

Gene Ontology

Molecular Function	DNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, negative regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396546
Ensembl Gene
KEGG	gga:396546

Entry 1

GEISHA Id	GH6.Takahashi.2003	Data Source	Publication
Complete cDNA Template Probe	show GCACAAGACAGGGAGTGTTTGTGCAGTGCTGGATTTCAGCGCGGTGATTACACTCAGGGAAATACGGACAGAAGCACCG CGGCCGCGAATTCGCGGCCGCCCGCGGGGCAGCGGGGAGCCGAGGAGCCATCCTCCGGCGGAGCCGGGACCCCCCCTCC CGCAGCTGTTTTACCGACGATGCCGGACGAAGCGACGGAAAACGCCGGCTCCACATCTGCCCGCGTCTCGTCCTTTTTC ATCGAGGACCTGCTGGGCACCGAAGGCGGCGGAGGGACGCGGAGGGCGGCGGCGGGAGGCGGAGGTGGGCGCGGAGCTC CGCGCTGCGGCCCCCACTCCCCGCTGCGCCTCGGAGCCTCGGGCTGCCCGCTCCGCGACGCCGCCGTCGGTTGGTACCG TCGAGCTTTCTTGGGCTGCGCCAGCCCCGACACCAGCGACCGGGACTCGCCGGAGCTGCCCGAGGACACGGAGCGGGCG GGCGGCGGCGGGCGGGCGGCGGCGCGGGGCCCCGCGGGCGGGAGGCAGAGCTCCGGAGGCCGCGAGGAAGAGGAGGAAC GCGGCGAGGAAGCG
Citation	Takahashi H, Shintani T, Sakuta H, Noda M. CBF1 controls the retinotectal topographical map along the anteroposterior axis through multiple mechanisms. Development. 2003 Nov;130(21):5203-15. Epub 2003 Sep 3.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors.
Comments	The authors indicated the probe was the 567 bp fragment of chick GH6 (4-570; AF227921)

Stage

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Comments (click to highlight)

13-18

stage 18

Retina

Entry 2

GEISHA Id	GH6.Kiernan.1997	Data Source	Publication
Complete cDNA Template Probe	show CCGCGGGGCAGCGGGGAGCCGAGGAGCCATCCTCCGGCGGAGCCGGGACCCCCCCTCCCGCAGCTGTTTTATCGACGAT GCCGGACGAAGCGACGGAAAACGCCGGCTCCACATCTGCCCGCGTCTCGTCCTTTTTCATCGAGGACCTGCTGGGCACC GAAGGCGGCGGAGGGACGCGGAGGGCGGCGGCGGGAGGCGGAGGTGGGCGCGGAGCTCCGCGCTGCGGCCCCCACTCCC CGCTGCGCCTCGGAGCCTCGGGCTGCCCGCTCCGCGACGCCGCCGTCGGTTGGTACCGTCGAGCTTTCTTGGGCTGCGC CAGCCCCGACACCAGCGACCGGGACTCGCCGGAGCTGCCCGAGGACACGGAGCGGGCGGGCGGCGGCGGGCGGGCGGCG GCGCGGGGCCCCGCGGGCGGGAGGCAGAGCTCCGGAGGCCGCGAGGAAGAGGAGGAACGCGGCGAGGAAGCGGGCGAAG CGGAGCAGCGAGCCGCCGGCCGCAAGAAGAAGACGCGCACGGTGTTCAGCCGCAGCCAGGTCTTCCAGCTGGAGTCCAC CTTCGACGTGAAGCGCTACCTGAGCAGCTCCGAGAGGGCCGGCCTGGCCGCCTCGCTGCACCTCACCGAGACGCAGGTG AAGATTTGGTTCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTCGCCGCCGACCTGGAGGCGGCCAACCTCTCACACG CCGCCCAAAGGATTGTGCGGGTCCCCATTTTGTACCACGAGAACTCGCCGGCCAGCGCCTTGGGCTTCGGCCTGCCCCA CATGTCCCCCCCCTTGGTGGGCTTCTCCGGCGGCGTCAGTTACCCCCTGGGCACCTTCCCCGCCGCCTCCCTTCCCTTC CTTCGCTCGCAGATGACGGGACTCGTCTGAGCGCCCACCTGTGTCGGGACCGCGGCCCCGAGCCCCCTCCCTTGGCTTC CAGCTTCACCCTCGGACTTTTTCTTTCCACTTTCACCATTTTCCGCTTTTCGACTTTTATTTAAAAAAAA
Citation	Kiernan AE, Nunes F, Wu DK, Fekete DM. The expression domain of two related homeobox genes defines a compartment in the chicken inner ear that may be involved in semicircular canal formation. Dev Biol. 1997 Nov 15;191(2):215-29.
Copyright	Copyright q 1997 by Academic Press.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205533.2). GH6 is also known as HMX1 in NCBI.