GEISHA - A Chicken Embryo Gene Expression Database
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HDAC3
histone deacetylase 3

Gene
Official SymbolHDAC3
Official Full Namehistone deacetylase 3
CGNC ID1896
also known ashistone deacetylase 3|HD3
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204747
PolypeptideNP_990078
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2110
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly44446FBgn0025825
Human8841ENSG00000171720MIM:605166
Mouse15183ENSMUSG00000024454All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4) MGI:1343091
Xenopus549637, 432017481105
Zebrafish393965ENSDARG00000037514ZDB-GENE-040426-847ZFIN:ZDB-GENE-040426-847
Gene Ontology
Molecular Functionchromatin binding, histone deacetylase activity, more...NAD-dependent histone deacetylase activity (H3-K14 specific), NAD-dependent histone deacetylase activity (H3-K18 specific), NAD-dependent histone deacetylase activity (H3-K9 specific), NAD-dependent histone deacetylase activity (H4-K16 specific), transcription corepressor activity, transcription factor binding
Biological Processchromatin modification, negative regulation of transcription from RNA polymerase II promoter, more...transcription, DNA-templated
Cellular Componentcytoplasm, histone deacetylase complex, nucleus, transcriptional repressor complex
Links to other databases
Entrez Gene395506
Ensembl GeneENSGALG00000002634
KEGGgga:395506
GEISHA IdHDAC3.Murko.2010Data SourcePublication
Complete cDNA Template Probeshow
GCCCCGCCCCTTACCGGCCACTTCTCGCGAGAGCTGGCGCACAGACAAGGGCCGACGGGAGGTGCGGTCGCGAAGTGAT
GACGTAAGGGGGGGCGCGGGGTGGCGGTGGCGGCCTGTTCGCCATGGCGAAGACCGTGGCCTATTTCTACGACCCGGAC
GTCGGCAATTTCCACTACGGAGCCGGGCACCCCATGAAGCCGCACCGCCTGGCGCTCACCCACAGCCTGGTGCTGCACT
ACGGCCTCTACAAGAAGATGATCGTTTTCAAGCCATACCAGGCATCGCAGCATGACATGTGCAGATTCCACTCCGAGGA
CTACATAGACTTCCTGCAGAGAGTGAGTCCCAACAACATGCAGGGCTTCACCAAAAGCCTCAATGCTTTCAACGTGGGC
GATGACTGCCCAGTGTTTCCAGGGCTCTTTGAGTTTTGCTCTCGCTACACTGGGGCCTCCCTGCAGGGAGCAACGCAGC
TGAACAACAAGATCTGTGATATTGCAATAAACTGGGCAGGGGGCCTACATCATGCCAAAAAGTTTGAGGCTTCTGGGTT
TTGTTACGTCAACGACATAGTAATTGGCATCCTGGAGCTGCTCAAATACCACCCACGTGTTCTGTATATTGATATTGAT
ATCCATCACGGAGATGGTGTGCAGGAAGCTTTCTACTTGACAGACCGTGTCATGACCGTGTCATTCCATAAATATGGAA
ACTATTTCTTTCCTGGTACAGGGGACATGTATGAAGTTGGTGCGGAGAGTGGTCGTTATTACGCTCTAAATGTGCCTCT
ACGAGATGGTATCGATGACCAAAGTTATAAACACCTCTTCCAACCAGTCATTAACCAAGTGGTAGATTACTATCAGCCC
ACCTGCATCGTATTGCAGTGTGGTGCAGATTCTCTGGGTCGTGACCGGCTGGGCTGCTTTAACCTCAGTATAAGAGGAC
ATGGGGAGTGCGTGGAGTACGTAAAGAGTTTCAACATCCCCTTACTGGTGCTGGGAGGAGGCGGGTACACAGTCCGCAA
TGTGGCACGATGCTGGACTTACGAAACATCGTTGCTTGTAGATGAAGCAATTAGTGAAGAGCTCCCATACAGCGAGTAC
TTTGAATACTTCGCTCCAGATTTCACTCTTCATCCTGATGTCAGTACGAGGATTGAAAATCAGAACTCCAGGCAGTACT
TGGATCAGATCAGGCAGACAATATTTGAGAACCTGAAGATGCTGAACCATGCTCCCAGCGTGCAGATCCACGATGTCCC
TTCTGACTTGCTGAGCTACGATCGCACAGATGAACCTGATCCAGAGGAAAGAGGCTCTGAGGAAAACTACAGCAGGCCT
GAAGCTGCCAACGAGTTTTATGATGGTGACCACGATAACGACAAAGAGAGTGACGTTGAGATCTGAGGAATCCGATGGA
CTCTCTGGACTCTGGAGATCTGGGACTCTGGACCATGGGGGGTGGTTCCCATGTTGGACATTGGTGCAGTTAACTGGGC
TGCGTGGGAGCCAGTGAGCCCTCCCTTCATATTCAACTGCATGTGGTGGCACGG
CitationMurko C, Lagger S, Steiner M, Seiser C, Schoefer C, Pusch O. Expression of class I histone deacetylases during chick and mouse development. Int J Dev Biol. 2010;54(10):1527-37.
CopyrightReprinted from Int. J. Dev. Biol., 55(1), Copyright (2010), with permission from the authors and IJDB
CommentsProbe is from base pairs 1185-1500 of accession number NM_204747.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14
stage 15
stage 18
Ear/Otic Placode
Eye
Forebrain
Head Mesenchyme
Hindbrain
Limb Buds
Mesencephalon
Midbrain
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Somites
Telencephalon
Wing
 
19-24
stage 24
Eye
Forebrain
Head Mesenchyme
Heart
Lung
Notochord
Somites
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2110

Mouse

EmageMGI:1343091
EurexpressMGI:1343091
MGI GXDMGI:1343091

Frog

Xenbase481105

Fruit Fly

BDGPFBgn0025825

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-847
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