GEISHA - A Chicken Embryo Gene Expression Database
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HES5
hes family bHLH transcription factor 5

Gene
Official SymbolHES5
Official Full Namehes family bHLH transcription factor 5
CGNC ID773
also known astranscription factor HES-5|hairy and enhancer of split 5
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_001012695
PolypeptideNP_001012713
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human388585ENSG00000197921MIM:607348
Mouse15208ENSMUSG00000048001All phenotypic alleles (4):Targeted, knock-out(3) Targeted, other(1) MGI:104876
Xenopus733755, 398151, 733286876634
Zebrafish30300ENSDARG00000038205ZDB-GENE-980526-521, ZDB-GENE-980526-274ZFIN:ZDB-GENE-980526-521, ZFIN:ZDB-GENE-980526-274
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene419392
Ensembl GeneENSGALG00000001141
KEGGgga:419392

Entry 1

GEISHA IdHES5.Hayes.2007Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationHayes S, Nelson BR, Buckingham B, Reh TA. Notch signaling regulates regeneration in the avian retina (2007). Dev Biol. 2007 Dec 1;312(1):300-11. Epub 2007 Sep 29.
CopyrightCopyright © 2007 Elsevier Inc. All rights reserved.
CommentsAccording to authors , "Hes5 plasmid was described in (Ref)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001012695)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 44
stage 44
Retina
According to the author, P1 is the day the chicken hatched. Sections are P4.

Entry 2

GEISHA IdHES5-1.Fior.2005Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationFior R, Henrique D (2005). A novel hes5/hes6 circuitry of negative regulation controls Notch activity during neurogenesis. Dev Biol. 2005 May 15;281(2):318-33.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001012695).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Neural Plate/Tube
Caudal Neural Plate
7-8
stage 7
stage 8
stage 8
Neural Plate/Tube
Caudal Neural Plate

Entry 3

GEISHA IdHES5-2.Fior.2005Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationFior R, Henrique D (2005). A novel hes5/hes6 circuitry of negative regulation controls Notch activity during neurogenesis. Dev Biol. 2005 May 15;281(2):318-33.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001012695).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Neural Plate/Tube
Caudal Neural Plate
7-8
stage 7
stage 8
stage 8
Neural Plate/Tube
Caudal Neural Plate

Entry 4

GEISHA IdHES5-3.Fior.2005Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationFior R, Henrique D (2005). A novel hes5/hes6 circuitry of negative regulation controls Notch activity during neurogenesis. Dev Biol. 2005 May 15;281(2):318-33.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001012695).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Neural Plate/Tube
Caudal Neural Plate
7-8
stage 7
stage 8
stage 8
Neural Plate/Tube
Caudal Neural Plate

Entry 5

GEISHA IdHES5.Maier.2009Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationMaier E, Gunhaga L. Dynamic expression of neurogenic markers in the developing chick olfactory epithelium. Dev Dyn. 2009 Jun;238(6):1617-25.
CopyrightDev. Dyn Copyright © 2009 John Wiley & Sons, Inc. All Rights Reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001012695.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
Nasal Placode/Nerve
 
13-18
stage 14
stage 14
stage 17
stage 17
Nasal Placode/Nerve
 
19-24
stage 22
stage 22
Nasal Placode/Nerve
 
25-30
stage 29
stage 29
Nasal Placode/Nerve
 
31-34
stage 34
stage 34
Nasal Placode/Nerve
 

Entry 6

GEISHA IdHES5.Paxton.2010Data SourcePublication
Complete cDNA Template Probeshow
CCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTCAGCTACCTGAAATACAGCCGA
GCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGTGCCTCAAAGAAGCTCTGCAAT
TCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCAGAGGTCACAAGCAATGCCCAA
GGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACACCAGTGAAGCCTTCCTGCAAC
CTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACATTCCAGAGGAGACTACGACTT
GCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGAGCATTACTGCGTGTGGATGCC
TGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTCTGAAGGAATGCAGGACGTAAC
CCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAGTGAGGTTGCACGGGTACATCT
CitationPaxton CN, Bleyl SB, Chapman SC, Schoenwolf GC. Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright 2009 Elsevier B.V. All rights reserved.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described 5-ccagagacaccaacccaact-3; 5-agatgtacccgtgcaacctc-3
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 6
stage 6
Hensen's Node
Neural Plate/Tube
Unlabeled
 
7-11
stage 9
stage 11
stage 11
Forebrain
Hensen's Node
Hindbrain
Midbrain
Neural Plate/Tube
Pharynx
Spinal Cord
 

Entry 7

GEISHA IdHES5.Maier.2010Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationMaier, E, von Hofsten, J, Nord, H, Fernandes, M, Paek, H, Hebert, JM, Gunhaga, L, Opposing Fgf and Bmp activities regulate the specification of olfactory sensory and respiratory epithelial cell fates. Development. 2010 May 15; 137(10): 1601–1611.
CopyrightCopyright © 2010. Held by the authors. Requested
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001012695.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14
  
19-24
stage 22
stage 22
stage 22
stage 22
Forebrain
Nasal Placode/Nerve
Stage 12 to 22, observed at 22
25-27
stage 25
stage 25
stage 25
stage 25
stage 27
stage 27
stage 27
stage 27
stage 27
Nasal Placode/Nerve
Stage 17 to 25, observed at 25.
Stage 17 to 25, observed at 25.
Stage 21 to 27, observed at 27
Stage 21 to 27, observed at stage 27

Entry 8

GEISHA IdHES5.1.Akai.2005Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationJun Akai, Pam A. Halley, Kate G. Storey. FGF-dependent Notch signaling maintains the spinal cord stem zone. Genes Dev. 2005 December 1; 19(23): 2877–2887.
CopyrightCopyright © 2005, Cold Spring Harbor Laboratory Press
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-8
stage 8
Neural Crest
Neural Plate/Tube
 

Entry 9

GEISHA IdHES5.1.Daudet.2007Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationDaudet N, Ariza-McNaughton L, Lewis J. Notch signalling is needed to maintain, but not to initiate, the formation of prosensory patches in the chick inner ear. Development. 2007 Jun;134(12):2369-78.
CopyrightCopyright 2007 the authors. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001012695.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Ear/Otic Placode
Neural Plate/Tube
 

Entry 10

GEISHA IdHES5.3.Daudet.2007Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationDaudet N, Ariza-McNaughton L, Lewis J. Notch signalling is needed to maintain, but not to initiate, the formation of prosensory patches in the chick inner ear. Development. 2007 Jun;134(12):2369-78.
CopyrightCopyright 2007 the authors. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001012695.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Ear/Otic Placode
Neural Plate/Tube
 

Entry 11

GEISHA IdHES5.Ratie.2013Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationLeslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright© 2013 Ratié et al.; licensee BioMed Central Ltd.
CommentsThe sequence below was obtained from NCBI (acc # NM_001012695.1) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 11
Hypothalamus
Telencephalon
 
13
stage 13
stage 13
stage 13
Hypothalamus
Isthmus/MHB
Mesencephalon
Double Labeled ISH: HES5, blue; Nkx2.1, red
left side embryo - DMSO vehicle control
right side embryo - DAPT treated

Entry 12

GEISHA IdHES5.Ware.2014Data SourcePublication
Complete cDNA Template Probeshow
GGCTCGAGCCAGCTTCGTGCTGACAGCAGCTCTCGGATAATGGCACCCAGCGCTCTCTCCCTGGAAATCCTGACACCCA
AAGAGAAGAACAGACTCAGAAAACCCATTGTAGAGAAACTGCGTCGCGATAGGATTAACAGCAGCATTGAGCAGCTGAA
GCTGCTCCTGGAGAAGGAGTTCCAGAGACACCAACCCAACTCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACTGTC
AGCTACCTGAAATACAGCCGAGCTTTTGCAGCCTCTGCCAAAAGCCTACAGCAGGATTACTGCGAAGGGTATGCCTGGT
GCCTCAAAGAAGCTCTGCAATTCCTGTCTCTCCATTCAGCAAACACAGAAACTCAGATGAAGCTGATCTGCCATTTCCA
GAGGTCACAAGCAATGCCCAAGGACTCCGGTTCTCCTTCTGCATCCACTTCCACTCACCAGCCCTCAGCAAAACAAACA
CCAGTGAAGCCTTCCTGCAACCTCTGGAGGCCTTGGTAGGCCAAGAGCACGCTCACCATCACCTGGACACTGGTGCACA
TTCCAGAGGAGACTACGACTTGCTACAGAAGTCCCCCTACTCCTCTCACCAGTAGGAAAAAATGTTTTCCTTCTGCAGA
GCATTACTGCGTGTGGATGCCTGCTTCCCTTCTTCCAGAAGGACCGAAATGTTCCCACCATGTGGAGAGAAAGTTATTC
TGAAGGAATGCAGGACGTAACCCTCCTGCTAGGAGGACCGAGTCGTTCAGAGAGGAACGCCGACTGTTCTTAACCTTAG
TGAGGTTGCACGGGTACATCTGTTAAGAAAGCTATATCCGCTGAGATGTTCAGGTCAGCGTTTTCAGGTGTCCGCTCAG
CAGCAGCCCCCCCTGCCTCCTGCCCTGCTCGGGGCCCCCACACCGCCTGCACCTGAGCCACAGGCTGCAGCTGGGGCTG
GGCTAAGCGCACACACGTGAAAACCTGGCTGCCAGCAGGTTCTATGATATTTGTAGACTGTACTGAGCATGCTCCAGAA
ATGGCTAAACCATAACTCAAGCTGTGTAGAGGAAATTCCTCGGGATGTCTTGCTCGCAAAGTCAGAGTGCTGTTTGTGA
GGTTCAGGATATGTATGCCTTTTATAAAGGCAAGAGCTCCTTCTAATATCCTTATAGGAATGAAAGTTACGGCTGAAAA
AAA
CitationWare M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
CopyrightCopyright © 2014 Ware, Hamdi-Rozé and Dupé
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (Acc. # NM_001012695.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Hypothalamus
 

Mouse

EmageMGI:104876
MGI GXDMGI:104876

Frog

Xenbase876634

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-521, ZDB-GENE-980526-274
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