GEISHA - A Chicken Embryo Gene Expression Database
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HHEX
hematopoietically expressed homeobox

Gene
Official SymbolHHEX
Official Full Namehematopoietically expressed homeobox
CGNC ID5114
also known asPROBOX, hematopoietically-expressed homeobox protein HHEX|homeobox protein HEX|homeobox protein PRH, Homeobox protein PRH , Hex, Hematopoietically expressed ho
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205252
PolypeptideNP_990583
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3316
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3087ENSG00000152804MIM:604420
Mouse15242All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4) MGI:96086
Xenopus395060, 373590487158
Zebrafish30098ZDB-GENE-980526-299ZFIN:ZDB-GENE-980526-299
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processcell differentiation, multicellular organismal development, more...negative regulation of transcription, DNA-templated, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396182
Ensembl Gene
KEGGgga:396182

Entry 1

GEISHA Idpat.pk0074.g5Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGACCATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCC
CCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAGCTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAG
CCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGGCCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGA
CCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGGGGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAG
GAGGACCCCGAGTCCGACGTCTCCGACGACTCCGACCAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCA
CACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGGCTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGG
GAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAAGCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGAT
ATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGATCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTAC
TGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTGACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCC
CCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAGGGCAGGACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTTAA
TGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAATGTATTCTGTGCCATAGAGAGGGAATGGAGCATCCCGAGAGTGC
TTTACCCCACCAAGAACTGCAGCTGCATCCCCTGGAGGATCCCCCCTCACCGGCAGAAGCTGTGGGGACGTTCCGTTTT
GTCCTGAAGGAGGGAAAGTCCCTCTCGCATTTGGAAGATTTGCCCCAAAACTGGGGGTTCCCTTGCCGGGAAAAAATAC
TAAAAAAACCAAAACCGACCCGGTTCAACCCACCGGCTTTTTTTTCTTAAAATGTGGGGGGCCCCAATTTTCATTTTAA
GGAATAGGGCTTAAGGCTTCCGGGCATGTGAAGGGCCCCGGCCGGGGCCCTCCTCTGGCAAGGATGCTTAAACTTTGGT
TTCACCCTGTGCTTTTTATATGGTAAAAAAAAAAAAAGCCCTG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Blood Islands
Head Process
heart field
7-12
stage 9
stage 11
Anterior Intestinal Portal
Blood Islands
Head Mesenchyme
Intermediate Mesoderm
Liver
 
13-18
stage 14
stage 14
stage 14
stage 15
Blood Vessels
Endocardium
Endoderm
Foregut
Hindgut
Liver
Outflow Tract
Sinus Venosus
Thyroid
 
19-24
stage 19
stage 20
stage 23
stage 23
stage 24
Allantois
Blood Vessels
Endocardium
Liver
Outflow Tract
Sinus Venosus
Thyroid
blood vessels over nervous system
roof of HB, vascular endothelium in face.

Entry 2

GEISHA IdHexData SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Area Pellucida
Hypoblast
 
4-6
stage 4
stage 6
stage 6
Anterior Intestinal Portal
Area Opaca
Area Pellucida
Blood Islands
Endoderm, early
Head Process
Hensen's Node
Hypoblast
 
7-12
stage 7
stage 10
stage 11
Anterior Intestinal Portal
Blood Islands
Blood Vessels
Endoderm, early
Liver
 
13-16
stage 14
stage 16
Anterior Intestinal Portal
Blood Islands
Blood Vessels
Liver
Tail
Thyroid
 

Entry 3

GEISHA IdHex.Yanai.2005Data SourcePublication
Complete cDNA Template Probeshow
CGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAGC
CGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACGC
CGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCCC
CCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCGG
ACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTACG
CCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGCC
GCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGACC
ATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAGC
TCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGGC
CACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGGG
GGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGACC
AGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGGC
TTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAAG
CACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGAT
CTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTGA
CCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAGG
GCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAATG
TATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
CitationYanai M, Tatsumi N, Endo F, Yokouchi Y. Analysis of gene expression patterns in the developing chick liver. Dev Dyn. 2005 Jul;233(3):1116-22.
CopyrightWiley-Liss, Inc. 2005
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Anterior Intestinal Portal
Endoderm
Head Process
 
13-18
stage 17
Liver
Thyroid
 
19-24
stage 22
Liver
 
25-30
stage 25
stage 25
Endoderm
Liver
 
31-42
stage 36
stage 39
stage 42
stage 42
Endoderm
Liver
Pancreas
IHBD=interhepatic bild ducts
gall bladder

Entry 4

GEISHA IdHex.Chapman.2002Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationChapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99.
Copyright2002 Elsevier Science (USA). All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIV
Hypoblast
Kohler's Sickle
 
1-3
stage 3
Endoderm, early
Hypoblast
Primitive Streak
 
4-6
stage 4
stage 5
stage 6
Blood Islands
Endoderm
Germinal Crescent
Head Process
Hensen's Node
Primitive Streak
Chordin expression in the notochord shown in red.
Prechordal Plate

Entry 5

GEISHA IdHEX.Ishii.2007Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationIshii Y, Langberg JD, Hurtado R, Lee S, Mikawa T. Induction of proepicardial marker gene expression by the liver bud. Development. 2007 Oct;134(20):3627-37. Epub 2007 Sep 12.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by T. Mikawa.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205252).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 12
Liver
 
13-16
stage 14
stage 14
stage 16
stage 16
stage 16
stage 16
stage 16
stage 16
stage 16
stage 16
Liver
 

Entry 6

GEISHA IdHex.Klewer.2006Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationKlewer SE, Yatskievych T, Pogreba K, Stevens MV, Antin PB, Camenisch TD. Has2 expression in heart forming regions is independent of BMP signaling. Gene Expr Patterns. 2006 Jun;6(5):462-70. Epub 2006 Feb 3.
CopyrightReprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
CommentsAccording to authors , "... Hex (full-length, a the gift of G.H. Goodwin, Institute of Cancer Research, London (Zhang et al., 2004)). " As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205252)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7
stage 7
Blood Islands
Lateral Plate Mesoderm
Cardiac crescent

Entry 7

GEISHA IdHex.Chapman.2008Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CommentsImages Provided by Susan Chapman. Insufficient information provided to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_205252).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
stage XIII
Hypoblast
Kohler's Sickle
 
1-3
stage 2
stage 3
stage 3
stage 3
stage 3
Early Endoderm
Germinal Crescent
Head Process
Headfold
Hensen's Node
Hypoblast
Primitive Streak
Chd:red
Double labeled
Hex:blue
4-6
stage 4
stage 4
stage 4
stage 4
stage 4
stage 4
stage 5
stage 5
stage 5
stage 5
stage 5
stage 5
Anterior Intestinal Portal
Blood Islands
Early Endoderm
Epiblast
Germinal Crescent
Head Process
Hensen's Node
Hypoblast
Liver
Chd:red
Double labeled
Ganf:red
Hex:blue
7-12
stage 8
stage 9
stage 11
stage 12
stage 12
Anterior Intestinal Portal
Blood Islands
Blood Vessels
Early Endoderm
Head Mesenchyme
Heart Tube
Liver
Liver precursor endoderm
13-14
stage 14
stage 14
Blood Islands
Hindgut
Liver
Proepicardium
Thyroid
 

Entry 8

GEISHA IdHEX.Bertocchini.2008Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationFederica Bertocchini, Claudio D Stern (2008). A differential screen for genes expressed in the extraembryonic endodermal layer of pre-primitive streak stage chick embryos reveals expression of Apolipoprotein A1 in hypoblast, endoblast and endoderm. Gene Expression Patterns, Volume 8, Issues 7-8, September 2008, Pages 477-480, ISSN 1567-133X, DOI: 10.1016/j.gep.2008.07.001.
CopyrightCopyright © 2008 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205252).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIV
Hypoblast
Stage XIV EG&K

Entry 9

GEISHA IdHEX.Foley.2000Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationFoley AC, Skromne I, Stern CD. Reconciling different models of forebrain induction and patterning: a dual role for the hypoblast. Development. 2000 Sep;127(17):3839-54.
CopyrightPrinted in Great Britain © The Company of Biologists Limited 2000
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205252).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Hypoblast
Stage XII-XIII
1-3
stage 2
Hypoblast
 
4
stage 4
stage 4
Hypoblast
Primitive Streak
 

Entry 10

GEISHA IdHEX.Lopez-Sanchez.2009Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationLopez-Sanchez C, Garcia-Masa N, Gañan CM, Garcia-Martinez V. Movement and commitment of primitive streak precardiac cells during cardiogenesis. Int J Dev Biol. 2009;53(8-10):1445-55.
CopyrightReprinted from Int. J. Dev. Biol. Copyright (2009), with permission from UBC Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_205252.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
stage 6
Early Endoderm
Early Mesoderm
gene was expressed in the lateral endoderm and bilateral mesoderm
gene was expressed in the lateral endoderm and bilateral mesoderm.
7-8
stage 7
stage 7
stage 8
stage 8
Early Endoderm
Liver
gene expressed in the level of splanchnic mesoderm of the heart rudiment
gene was expressed in the pericardial splanchnic mesoderm

Entry 11

GEISHA IdHHEX.Yaklichkin.2011Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationYaklichkin SY, Darnell DK, Pier MV, Antin PB, Hannenhalli S. Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evol Biol. 2011 Oct 15;11:302.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205252.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-17
stage 14
stage 14
stage 17
Thyroid
 

Entry 12

GEISHA IdHHEX.Lee.2020Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationHyung Chul Lee, Hui-Chun Lu, Mark Turmaine, Nidia M. M. Oliveira, Youwen Yang† , Irene De Almeida and Claudio D. Stern. Molecular anatomy of the pre-primitive streak chick embryo Open Biol. null. 10.1098/rsob.190299.
CopyrightCopyright © 2020 The Authors.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205252.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage X
stage XII
stage XII
stage XIV
stage XIV
Hypoblast
Unlabeled
Stage EGK X-XI
Stage EGK XII-XIII
Stage EGK XIII-XIV
all
 
  

Entry 13

GEISHA IdcHEX.Yatskievych.1999Data SourcePublication
Complete cDNA Template Probeshow
GCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGGGGCCGGGGAG
CCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTACGCGCCCACG
CCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCCGCGCCGGCCC
CCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGGCCCCGTACCG
GACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCACCGGCGCTTAC
GCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCCCTGGGAAAGC
CGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCAACGAGCAGAC
CATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAAGCTGCTGCAG
CTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAGAACCCCCAGG
CCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGTCGGAGGGCAGCCCCAGCCCCGCGGGGGG
GGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGACGACTCCGAC
CAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAGCCGAGCTCGG
CTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAAAGACAAAGAA
GCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTTTTTTGGCAGA
TCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTATGTTGATTGGTGCTCTG
ACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGGGGAGCACTGAG
GGCACCACCGTGCCTTTGTGTGTGCGAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCAGGCAGAGAAAT
GTATTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCTGCATCCCCCGG
AAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTCCCTCATCGCAT
TTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAAAACAAAACAAAAACAAAAACCAAAC
ACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAGAAGG
AAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGACAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCTCGTG
TACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAAAAGA
AAAAAAAAAAAAGGAATCAAAAACTGGT
CitationYatskievych TA, Pascoe S, Antin PB. Expression of the homebox gene Hex during early stages of chick embryo development. Mech Dev. 1999 Jan;80(1):107-9
Copyright© 1999 Elsevier Science Ireland Ltd All rights reserved
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205252.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
stage XII
stage XII
Hypoblast
Kohler's Sickle
 
4-6
stage 5
stage 5
stage 6
stage 6
Area Opaca
Early Endoderm
Extraembryonic Mesoderm
Head Process
Hensen's Node
Hypoblast
head fold
stage 5 -
7-12
stage 9
stage 10
stage 10
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
Anterior Intestinal Portal
Aorta
Blood Islands
Blood Vessels
Central Nervous System
Endocardium
Endoderm
Endothelial Cells
Intermediate Mesoderm
Myocardium
Paraxial Mesoderm
Thyroid
cardiogenic crescent
dorsal aorta
endoderm adjacent to the vitelline vein
intersomtic vessels
13-14
stage 14
Blood Islands
Intermediate Mesoderm
Liver
Renal
Tail
Thyroid
 
all
 
  

Entry 14

GEISHA IdHHEX.Anderson.2021Data SourceDirect Submission
Complete cDNA Template Probeshow
GGAGAAACCCGCGGCGGCGGTGGCAGCAGCCGGCGGCCGCGCTCGGGGCCGCTCTCCGAGGGGCGGCCGGGCCGCGGGG
GGCCGGGGAGCCGCGCCATGCAGTATCAGGCGCCGGGCGCGGCTCCGGCGGCGGCCCTGGGCGTCGGCGTCCCTCTGTA
CGCGCCCACGCCGCTGCTGCAGCCCGCGCACCCCACGCCCTTCTACATCGAGGACATCCTGGGCCGCGGCCCCGCCGCC
GCGCCGGCCCCCCACTCCCTGCCCGCCCCGCCGCCGCCGACGCTGCCGTCGCCCAACTCCTCCTTCACCAGCCTGGTGG
CCCCGTACCGGACCCCCGTCTACGAGCCGACCCCCATCCACCCGGCCTTCTCTCACCACCTCGCCGCCACCTACGGCAC
CGGCGCTTACGCCGGGCCCCTCTACTCCTTTCCCCGCGCCGTCGGCGACTACACGCACGCACTGATCCGCCAGGACCCC
CTGGGAAAGCCGCTGCTGTGGAGCCCCTTCATCCAGCGGCCGCTGCATAAGAGGAAGGGTGGGCAGGTGCGCTTCTCCA
ACGAGCAGACCATCGAGCTGGAGAAGAAGTTCGAGACGCAGAAATACCTCTCCCCGCCCGAGAGGAAGCGCCTGGCCAA
GCTGCTGCAGCTCAGCGAGCGCCAGGTCAAAACGTGGTTCCAGAACCGCAGAGCCAAATGGAGGCGACTGAAGCAGGAG
AACCCCCAGGCCACCAAAAAGGAGGAGGCGGAAGGCACCGGCGATCACGGCGACCCTCGGCCGGAGGGCAGCCCCAGCC
CCGCGGGGGGGGGCGAGGCCGAGCCGCAGGACAGCCCTTCGGCCGCCTCGCAGGAGGACCCCGAGTCCGACGTCTCCGA
CGACTCCGACCAGGAGGTGGACATCGAGGGCGACAAAGGCTTCTACAGCGCCACACGCTGACGGCCCGCGGGCACGGAG
CCGAGCTCGGCTTGCGCTGTCCCGGGACTGCGGGAAGGAGGATTTTATGACGGGAGAGGACCTTCACCATTCCGCCGAA
AGACAAAGAAGCACGAACGGACTCGTTCTGTAATAATCTGAGAAAGAAAAGATATTCGTTCTGCAAACGGTCCGTTTTT
TTTTTGGCAGATCTCTGATTTGATTGTAGGGACTGATCGGTGGTTTGTATTTACTGTGTAAGATCTGTGTGTACGTTGA
TTGGTGCTCTGACCGGGACACAGCGCTGTGCCCATCTCCGGCTGCTGGAACCCCCCTCTTCCCCAGCTCGTGTAGTGGG
GGAGCACTGAGGGCAGGACCGTGCCTTTGTGTGTGCAAACGAATCTGCTTTAAATGGAGTAATTTAAGTGTCCTTCGCA
GGCAGAGAAGTGTTTTCTGTGCCATAGAGAGGGATTGGAGCATCCCGAGAGTGCCTTACCCCACCCAGGACCTGCAGCT
GCATCCCCCGGAAGGATCCCCCCTCACCGGGCAGAGGCTGTGGGCACGTTCCGTTTTGCTCTTGATGGAGTGAAATGTC
CCTCATCGCATTTTGGAGGATTTTGCCCCACAATCTGTGTGGTTCCATTTGCAGGGAAAAAAAAACAAAAACCAAAACC
AAACACAGCAACAAACCAACCCAGGCTATTTTTTTCCTTGACAAATCTGTCGTGCTGTCCCCCAGATTTCCCATTTCAG
AAGGAAATGAGGGGCTGATAGGGCACTGCGAGGCGCAGTGTGGCAGCGGGCACCCGTGCCTGGCGTGTCCCTCTCTGCT
CGTGTACATAGCAGTTTGCCTTAAAAGTCTTTGCGGTTTTATACCTCACATTGTTCATATTTTGTACATATTGGTTTAA
AAGAAAAAAAAAAAGGAATCAAAAACTGGTATTTAATTTCTGATGGATTTCTTCGAAATAAAATGAAACTCTGCACCA
CommentsImages provided by Claire Anderson. As insufficient information was provided to verify sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_205252.2). Reference paper: T.A. Yatskievych, S. Pascoe, P.B. Antin. Expression of the homebox gene Hex during early stages of chick embryo development. Mech. Dev., 80 (1999), pp. 107-109.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Hypoblast
Kohler's Sickle
 
4-6
stage 4
stage 4
stage 6
Blood Vessels
Early Endoderm
Germinal Crescent
Head Process
Hensen's Node
Hypoblast
 
7-12
stage 8
stage 10
stage 11
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
Anterior Intestinal Portal
Atria
Blood Islands
Blood Vessels
Endocardium
Endoderm
Extraembryonic Blood Vessels
Foregut
Head Mesenchyme
Liver
Myocardium
Pharynx
Sinus Venosus
Splanchnic Mesoderm
Thyroid
Ventricles
Ventral view
section 13
section 28
section 4
section 42
13
stage 13
Blood Islands
Blood Vessels
Extraembryonic Blood Vessels
Liver
Thyroid
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3316

Mouse

EmageMGI:96086
EurexpressMGI:96086
MGI GXDMGI:96086

Frog

Xenbase487158

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-299
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