GEISHA - A Chicken Embryo Gene Expression Database
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HIF1A
hypoxia inducible factor 1 subunit alpha

Gene
Official SymbolHIF1A
Official Full Namehypoxia inducible factor 1 subunit alpha
CGNC ID8999
also known ashypoxia-inducible factor 1-alpha|HIF-1-alpha|HIF1-alpha|hypoxia inducible factor 1 alpha subunit|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor), Hypoxia-inducible factor 1 alpha, HIF1 alpha
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204297
PolypeptideNP_989628
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4933
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly43580FBgn0015542
Human3091ENSG00000100644MIM:603348
Mouse15251ENSMUSG00000021109All phenotypic alleles (12):Targeted, knock-out(7) Targeted, other(5) MGI:106918
Xenopus496583, 380141946621
Zebrafish393202, 797150ENSDARG00000034293, ENSDARG00000006181ZDB-GENE-040426-706, ZDB-GENE-080917-55ZFIN:ZDB-GENE-040426-706, ZFIN:ZDB-GENE-080917-55
Gene Ontology
Molecular FunctionDNA binding, histone acetyltransferase binding, protein dimerization activity, more...sequence-specific DNA binding transcription factor activity, signal transducer activity
Biological Processpositive regulation of transcription, DNA-templated, response to hypoxia, transcription, DNA-templated
Cellular Componentcytoplasm, nucleus
Links to other databases
Entrez Gene374177
Ensembl GeneENSGALG00000011870
KEGGgga:374177

Entry 1

GEISHA IdChEST818o24Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGGCTANCAAAGCTGTGCTAAATACTGCTGCAAGTTCACAAAACCTGGAAGCAGTCCTTGCAGCTGCTTTTATTTCTTT
CCTTAGATTTTAGGACTCTCTAGCCTCATGCTAATCCTTCTTTGGAGGACAAGATTTATATATACATTCATTTCTACAG
GTTAGCTTCATAATTTTGAATAAGTTTTTGTTTGTTTTTTGAAGTGTTGAGGCATTATCTTAGAGCACTTACTCTTTAC
CAGTAGTAAAGAAGGAACTGCAGCTGGATGTGCTTTTACATATGGAACATACTAAATTACGAGTTTCACAAAATAAGAG
GAACAGTGTTGCTTTCAGCAGCTCATCGGGACTGCAGCAGTAATCAAACCATGCATATCAGAGTGGTTGTCCAGCAGCT
TAGGTGTAATACACTTAAAGTTGCCTGGAGCCCAGAGTGCACACTTCCTACTGCACCTTCTACCATGCAGTAAGGTGGG
CTTGGACTGTATATCGATCTTAAAAAAAAACCTTTGGGTATAATAGAAACATTTTACTATTAACAATTTTCATTCCTGT
TGTACGCACAAATTCCCTGACAGTAATTATGAATCACTTTAAAGAGACAGATGCCGGAATGAACAATTAAAACTCTACG
TGCTTGCCAAGTTACCAAAAAGTTAAGAGTTTGCTACTGGATTTATACAGTATGGTAGATTTTGTGAATAACTGCAGTA
TTCTCTCATGAAAAAGTGGTATATTTTGATGGAATTCTTTTCTGGAACCAAGTACAACCTATTGCAATTGTATTTCTCT
TGAAACATTTTGACATACTTGTGATTGTACTTCTTTTTGATTGTGTAACGGTATAAAATTCAATAAAAGAGAGGGTTTG
TCTCT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Ear/Otic Placcode
Oral Pharynx
Surface Ectoderm
 
13-18
stage 13
stage 15
Intermediate Mesoderm
Oral Pharynx
 
19
stage 19
Oral Pharynx
Pharyngeal Arches and Clefts
Spinal Ganglia and Nerves
Widespread Expression
 

Entry 2

GEISHA IdHIF-1a.Nanka.2006Data SourcePublication
Complete cDNA Template Probeshow
GGAGCCGCTCGGATCGAGCGAGCAGCAGCCAGGCCGCCGCCATGGACAGCCCTGGCGGCGTCACCGACAAGAAGAGGAT
TAGTTCTGAACGCAGGAAAGAGAAGTCAAGAGATGCAGCCAGGTGCCGAAGAAGCAAGGAATCAGAAGTGTTCTATGAA
CTTGCTCATCAGCTGCCCCTTCCGCACACTGTGAGTGCCCACCTTGACAAGGCATCCATTATGAGGCTGACCATCAGCT
ACCTGCGCATGAGGAAGCTGCTGGATGCTGGTGAGCTAGAGACAGAAGCCAACATGGAGAAGGAGCTGAACTGTTTCTA
CTTAAAAGCTCTTGATGGATTTGTTATGGTGCTTTCTGAGGATGGGGACATGATTTACATGTCTGAAAACGTGAACAAG
TGTATGGGACTCACTCAGTTCGATTTGACGGGGCACAGTGTATTTGATTTCACTCATCCATGTGACCATGAAGAGCTGA
GAGAAATGCTTACACACAGAAATGGTCCTGTGAAAAAGGGCAAAGAGCAAAACACGGAGCGCAGCTTCTTTCTCAGAAT
GAAGTGTACGCTGACCAGCAGGGGAAGAACAGTGAATATAAAGTCTGCTACATGGAAGGTACTGCACTGCACTGGACAT
ATACGTGTATATGACACATGCAATAATCAAACTCACTGTGGCTACAAGAAGCCTCCCATGACGTGCTTGGTGTTGATAT
GTGAACCAATTCCTCACCCATCAAACATTGAGGTCCCCTTGGACAGTAAAACGTTCCTCAGTCGTCACAGTCTCGATAT
GAAATTTTCCTACTGTGATGAAAGAATTACAGAGTTGATGGGATATGAACCAGAGGAACTCCTGGGTCGTTCAATCTAT
GAGTACTATCATGCGCTGGATTCTGATCATCTGACCAAAACACACCATGATATGTTCACGAAAGGGCAGGTGACTACGG
GACAATACAGAATGCTTGCTAAACAAGGTGGCTACGTCTGGGTTGAGACTCAAGCAACTGTTATATACAACACTAAGAA
TTCTCAACCACAGTGCATAGTATGTGTAAACTATGTGTTGAGTGGAATTGTTCAGAAGGACTTGATATTTTCCCTTGGA
CAAACTGAGTGTATGCTGAAACCAGTGGAGTCTCCTGAAATGAAAATGACCAAAATATTCAGCAAAGATGACTGGGATG
ATACCAACAGCCTTTTTGAAAAACTTAAGCAGGAACCAGATGCTTTAACTGTGCTGGCTCCAGCTGCTGGAGACACAAT
CATCTCCCTAGATTTCAGCAGCAATGAGTCTGATGAACAACAATGTGATGAAGTCCCTTTGTATAACGATGTAATGCTC
CCCTCATCCAGTGAGAAATTGCAGAATATAAATATAGCAATGTCCCCTCTACCTGCCTCTGAAACTACAAAGCCACTTC
GTAGCAATGCCGATCCTGCACTCAATAGAGAAGTTGTATCAAAGCTGGAGCCAAACACAGAGACACTTGAACTTTCTTT
TACCATGCCTCAGGTACAAGAGCAACCAACCAGCCCTTCTGATGCAAGTACCAGCCAAAGTTCACCTGAGCCCAGTAGT
CCCAATGACTATTGCTTTGATGTGGATAATGACATGGCTAATGAATTCAAACTGGAATTAGTGGAGAAGCTCTTTGCAA
TAGATACAGAAGCAAAAAATCCATTCTCCACTCAGGAGACTGATTTAGACTTGGAAATGTTGGCTCCTTACATCCCAAT
GGATGATGATTTCCAGCTACGCTCCTTTGATCAACTATCTCCACTGGAAAGCAGTTCTTCTGGCTCTCAAAATGCAGCC
ACCATTACCATACTTCAGCAGACTCAGACACCATCAACTGCTGCTGATGAAATAAAACCAGTGGCAGAACGTGTGGATG
ATGTGAAGGCACTAATTGTTCCATCATCTCCTGTCCACGTAATAAATGACACGAGTAGTGCCCCTGCATCACCTTACAG
TGGAAACAGGAGTCGAACTGCATCTCCAATCAGAGCAGGAAAAGGAACATTGGAACAGACAGAAAAATCTTGTCCAGGA
GCACCCAGTTTGATAACAGTCACGCTGAACAAAAGATCTACTGCAATGGATGAAGAACTAAATCCAAAGATGCTAGCTT
TGCATAATGCTCAGAGAAAACGAAAAATGGAACATGATGGTTCACTTTTTCAGGCAGTTGGAATTGGGTCTTTATTCCA
GCAGACAGGTGACCGTGGAGGAAACGCATCGCTTGCTTGGAAACGTGTAAAGGCGTGCAAAACAAACGGTCACAATGGA
GTGGAGCAAAAGACAATCATTCTACTATCAACTGACATAGCGAGTAAACTTCTAGGGCAGTCGATGGATGAAAGTGGAC
TACCCCAACTCACGAGTTACGATTGTGAAGTAAATGCTCCCATACAAGGCAACAGAAACCTGCTACAGGGTGAAGAACT
GCTCAGAGCTCTGGATCAAGTTAACTGAGCTTTCACAGTAGTTGTTCCTTTTTTGGACACTGGTGAATCATCACCTAAA
GCAGTCTATTTATATTTTCTATATCTGATTTTAGAAGCCTGGCTACAGTACTGCACTAATTCAGTTAGTTCAGTTTTGA
TCCCCTTTCTACTTATTTTGTCAGTCTTTTTAATACATTCTTTATGTAACAGTAACTCAAACCGTAGTGCATTTTTATA
ATTCTTTGGTACATACACTTTAAAGTCCATTACATTTAGAACACACTTGCAATAGCAGCTTAGAAATATGCACCTGATT
TAAAAAGTATATATATTTATTTTTTGGCTGGGGAGTTGGTCACCAAAATCTATCATTAGTAAAATGTCAGCACGTGAAA
AACTGGCAGTACTTCCATCCTGCTCTTCATAGGTAGCTGGAAGACTTGTGCTCTCTTACTCTTTATGTTCAAGTAAGTT
TTTTTATTTTAATATTTTTTATAAGAAACAGCAATGCTTTGCAGCAGTGCATTGTAGCCACAATCGCACAATATATTTT
CTTAAAAAATACCAGCAGTTCCTCATGCAATATATCTGCATTTATAAAAACTAGTTTTTAAGAAGAATCTTTTGTTTGC
CTATGATATCATGTTTAAACCTGGATTATGTCATTATTTTAGTCACGTTGTAATATAAATTGTTCTTAAATGCTGTCTT
ACACTTTTGACTTAAGAGTGTGATTAGTCGAAGGGAAAGGATTGATCTGGGAAGGGCTAGCAGCATTTTATTTGGGTAC
ATTCTCAATTTAGAGAGAGAGTTGATGTTCTTAAAGTAGTCACTTTGCCAGCTTAAAAGAAATCCCTGCCTGTAGTTGT
TGAAGTTAATGCTAATATTGTGTATGATCTTAAATCTAAATGTTCAGCTTACCCTGTGTGGTATAGGTGATATTTCAAG
CAGACTGTAAACCATCTTGCATTGTTAGCAGTTTTATCTAGTACATCACTGAGTTGCTCAATATTTTAATGTTTTGGTT
TTAAGCACCTTGTTGCTATTAACATCCGTATACTTTCGTGTAGATTTCAATAACTTGAATATATTTAGAAGCCTTTTTA
TTTAGAAATATATAGTTGTCACAAACATCTTATTTTCCTATATGTACTGTACAAACCTTCATTCACTCGTTCTTTTGCT
CTTTGTGGTTGGATCTAACACTAACTGTATTGTTTTCTTACATCAATAAACTATATGTGGACCAGGCCCCCTCGGGGAG
TGTGTTATCTGAGAAAAGTGAGATAATTTATATTTTTGTTAGTGGTTATTGTTCATCCGTGTTCCCTTTTTAACTTAGA
CTTGATTGGAAACCCCAGCTTCCTTATTTTGATCATACCATCTCCGACGTAATTATTTGAGCCTATTCAGTACTAAATT
CTCCTACAGTGTTGTACTACCGCCGGCCAAAGATGTTAAACTTTTTAATCTGTTATCACACCAGTTAGCAAACTTGAAA
GGGAGAAGACAGCAAATCTGTGTTACTTCAAAGCAAAAAGACTTTTTCCTTAAGAACAGCTCAGAGGCTCATCTCTGGA
AGCATTATCAAGGTAACACTGGAAAGCAGGAAAAAGTAAAATTCACATGAGGGATCAATTAAAGACGAACTTGTTAAAA
TTGCAGTGAGAAATGAAGCTGGTACTCTGATAAAGAAAGGTTGTTCTACATTGTCATGCTGTTGACTCGGTAACTTTGC
TGTCCTAAAACACAAAACTACTGATACAACCTTGTAATGTGTAAATAGGGTCAAGATATCCGGTGCATTCGTCACAAAC
TATTGTAGGAAACTTATTTCACTGTAAGAAATGAAGTGTGGATGTCACAATTTCTTTTGGAATCTTTCTTTTCATTGAC
CTCCTTTAGAGTACTTTACAATCACTGTAATGCTGTATAAGCTTACCGTGCTTTTTAAAAATACTGTTACAGTTTTACT
GAAGCAAGAGCACTTTCCAAACTGACACAAGTGTGCTAATGAAACTAAATGGAACCAACGTTAAAAGACAAGGCACTGG
CAGCAGAAAATATGGTTGCATGTTTGAGTAGGAGTTGCATAGAGAGAGAAAAGCACTAAGCATGGACTTCAGGATTTGT
GCACAAGAAACATCTTGAATATACACACCTAATAAATACTAAGGGTTGTAATGAAACCCTTATATGTGGATGGTGTGCT
TCCCATGGCAGCGCTTTCTCCAGCAGCAGTAGAAGTTGTGATAGTGAAGCTGGTAAAGGCTTAAGAAAGGCACCAGCAG
ACTTGGGTTTAAATGAGCACTATTTCACCTAGGAATCTTCCCCATTCGTTACACATTTTCTGTCATACATATTAATGAG
GCACAGCATGTTGTTTACTATGCTTGTAGAAGTGAATGAAATAAGACTGAACTGCAGTACATGTAGCTGTTTGCACTCT
GGGCAACTGGAAAAAAAAAAGGCCTCAGCCTGAAAACCTAACTTTTAAAATTAAACATAAGATTTCAAGTGTTCCCTCC
TTCTCCCCCTCACTGACCCCTAATTATTGTGACAGTAATTATCAGGACCTGCCCACTGTATTCTGGAAGTTGTAGCTTC
CCTATGACTAAGACTGATGTGCTGTAGTTACTGGGAACAGTTCTTCAGCTCTCAGAGATGCTGAAGAAAGCATGGAAAA
TTAACAGTAACTGCTCTGGGCTACTCAAAGCTGTGCTAAATACTGCTGCAAGTTCACAAAACCTGGAAGCAGTCCTTGT
AGCTGCTTTTATTTCTTTCCTTAGATTTTAGGACTCTCTAGCCTCATGCTAATCCTTCTTTGGAGGACAAGATTTATAT
ATACATTCATTTCTACAGGTTAGCTTCATAATTTTGAATAAGTTTTTGTTTGTTTTTTGAAGTGTTGAGGCATTATCTT
AGAGCACTTACTCTTTACCAGTAGTAAAGAAGGAACTGCAGCTGGATGTGCTTTTACATATGAAACATACTAAATTACG
AGTTTCACAAAATAAGAGGAACAGTGTTGCTTTCAGCAGCTCATCGGGACTGCAGCAGTAATCAAACCATGCATATCAG
AGTGGTTGTCCAGCAGCTTAGGTGTAATACACTTAAAGTTGCCTGGAGCCCAGAGTGCACACTTCCTACTGCACCTTCT
ACCATGCAGTAAGGTGGGCTTGGACTGTATATCGATCTTAAAAAAAAACCTTTGGGTATAATAGAAACATTTTACTATT
AACAGTTTCCATTCCTGTTGTACGCACAAATTCCCTGACAGTAATTATGAATCACTTTAAAGAGACAGATGCCAGAATG
AACAATTAAAACTCTACGTGCTTGCAATGAAGTAAAGGTATAGGGATCAAAAATTAGTACAGGTTTAATAGCTGCATAT
TTAGAAGTAACTTTCATTATTTCAACAGCTTCTTAAACAGCTAAACAAGGGCAGCTGAAGGCAGGCTTTGTAGTTAAAC
TGCTCAATGAATCATTTCCTTCCTTGAATCCAAGAGGCAGGAGCACCCTCCCACTGTGAGGCAGGCACTAGAGGATAGG
CCTGAGGTCAATCATCTGTTCTCCATCCCCTCTGATTAGCTGCTACTGAACTGCGCACACAATTCACCCAAATGTCACT
GCACTTATGGATATTGTTCAGATTGCAATTATCCAGCACAAAAATAAACATTTCACAGGCCAGGAATGCTCTGTAGGAA
GGCCAGTATTGTCATAGGAACTCATGAGCTGAATACCCAGCTCTCATTAGTAATCATACGCTCAACTCCCTGGAAAGCT
CCAATCTTGAGGACTGTGATTTTGATCCACGTTCTAAAACTGAGGTGTCATTTCCTTTCTGCTTCCCTGCTTACCTTGA
GCAAAGCTTGCCAAGTTACCAAAAAGTTAAGAGTTTGCTACTGGATTTATACAGTATGGTAGATTTTGTGAATAACTGC
AGTATTCTCTCATGAAAAAGTGGTATATTTTGATGGAATCCTTTTCTTGGAACCAAGTACAACCTATTGCAATTGTATT
TCTCTTGAAACATTTTGACATACTTGTGATTGTACTTCTTTTTGATTGTGTAACGGTATAAAATTCAATAAAAGAGAGG
GTTTGTTTTT
CitationNanka O, Valásek P, Dvoráková M, Grim M. Experimental hypoxia and embryonic angiogenesis. Dev Dyn. 2006 Mar;235(3):723-33.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AB013746).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 22
stage 22
Forebrain
Hindbrain
Limb Buds
Midbrain
Pharyngeal Arches and Clefts
 
25-28
stage 28
  

Entry 3

GEISHA IdHif1alpha.Ota.2007Data SourcePublication
Complete cDNA Template Probeshow
GGCTAATGAATTCAAACTGGAATTAGTGGAGAAGCTCTTTGCAATAGATACAGAAGCAAAAAATCCATTCTCCACTCAG
GAGACTGATTTAGACTTGGAAATGTTGGCTCCTTACATCCCAATGGATGATGATTTCCAGCTACGCTCCTTTGATCAAC
TATCTCCACTGGAAAGCAGTTCTTCTGGCTCTCAAAATGCAGCCACCATTACCATACTTCAGCAGACTCAGACACCATC
AACTGCTGCTGATGAAATAAAACCAGTGGCAGAACGTGTGGATGATGTGAAGGCACTAATTGTTCCATCATCTCCTGTC
CACGTAATAAATGACACGAGTAGTGCCCCTGCATCACCTTACAGTGGAAACAGGAGTCGAACTGCATCTCCAATCAGAG
CAGGAAAAGGAACATTGGAACAGACAGAAAAATCTTGTCCAGGAGCACCCAGTTTGATAACAGTCACGCTGAACAAAAG
ATCTACTGCAATGGATGAAGAACTAAATCCAAAGATGCTAGCTTTGCATAATGCTCAGAGAAAACGAAAAATGGAACAT
GATGGTTCACTTTTTCAGGCAGTTGGAATTGGGTCTTTATTCCAGCAGACAGGTGACCGTGGAGGAAACGCATCGCTTG
CTTGGAAACGTGTAAAGGCGTGCAAAACAAACGGTCACAATGGAGTGGAGCAAAAGACAATCATTCTACTATCAACTGA
CATAGCGAGTAAACTTCTAGGGCAGTCGATGGATGAAAGTGGACTACCCCAACTCACGAGTTA
CitationOta K, Nagai H, Sheng G. Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick. Gene Expr Patterns. 2007 Aug;7(7):761-6. Epub 2007 Jun 12.
Copyright"Reprinted from Gene Expression Patterns, Volume number 7, Ota K, Nagai H, Sheng G, Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick,761-766. Copyright (2007), with permission from Elsevier". Copyright © (2007) Elsevier B.V. All rights reserved.
CommentsHif in situ probes were generated against nucleotides 1616–2389 of full length Hif1 alpha sequence (NCBI Accession # AB013746)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 5
stage 6
stage 6
Area Pellucida
Early Endoderm
Epiblast
Neural Plate/Tube
Surface Ectoderm
Widespread Expression
 
7-12
stage 7
stage 7
stage 8
stage 8
stage 9
stage 10
stage 10
stage 12
stage 12
Early Endoderm
Ectoderm
Epiblast
Gut
Intermediate Mesoderm
Neural Plate/Tube
Somites
Surface Ectoderm
Widespread Expression
check anatomies: endothelial tissues
13-14
stage 14
Intermediate Mesoderm
Notochord
Widespread Expression
 

Entry 4

GEISHA IdHIF1α.Etchevers.2003Data SourcePublication
Complete cDNA Template Probeshow
GAATTCAAACTGGAATTAGTGGAGAAGCTCTTTGCAATAGATACAGAAGCAAAAAATCCATTCTCCACTCAGGAGACTG
ATTTAGACTTGGAAATGTTGGCTCCTTACATCCCAATGGATGATGATTTCCAGCTACGCTCCTTTGATCAACTATCTCC
ACTGGAAAGCAGTTCTTCTGGCTCTCAAAATGCAGCCACCATTACCATACTTCAGCAGACTCAGACACCATCAACTGCT
GCTGATGAAATAAAACCAGTGGCAGAACGTGTGGATGATGTGAAGGCACTAATTGTTCCATCATCTCCTGTCCACGTAA
TAAATGACACGAGTAGTGCCCCTGCATCACCTTACAGTGGAAACAGGAGTCGAACTGCATCTCCAATCAGAGCAGGAAA
AGGAACATTGGAACAGACAGAAAAATCTTGTCCAGGAGCACCCAGTTTGATAACAGTCACGCTGAACAAAAGATCTACT
GCAATGGATGAAGAACTAAATCCAAAGATGCTAGCTTTGCATAATGCTCAGAGAAAACGAAAAATGGAACATGATGGTT
CACTTTTTCAGGCAGTTGGAATTGGGTCTTTATTCCAGCAGACAGGTGACCGTGGAGGAAACGCATCGCTTGCTTGGAA
ACGTGTAAAGGCGTGCAAAACAAACGGTCACAATGGAGTGGAGCAAAAGACAATCATTCTACTATCAACTGACATAGCG
AGTAAACTTCTAGGGCAGTCGATGGATGAAAGTGGACTACCCCAACTCACGA
CitationEtchevers HC. Early expression of hypoxia-inducible factor 1alpha in the chicken embryo. Gene Expr Patterns. 2003 Mar;3(1):49-52.
CopyrightReprinted from Gene Expr Patterns, Volume 3, Issue 1, Heather C. Etchevers, Early expression of hypoxia-inducible factor 1α in the chick embryo, Pages 49-52, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAuthor said: Plasmid pCHIF-1α-F2 was kindly provided by Dr Toshiyuki Takahashi (Takahashi et al., 2001) and corresponds to nucleotides 1623–2384 of chicken HIF1α (GenBank Accession number: AB013746).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 11
stage 11
stage 11
stage 12
stage 12
stage 12
Diencephalon
Head Mesenchyme
Hindbrain
Midbrain
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx
ectoderm of 1st branchial arch
rostral pharyngeal endoderm
13-18
stage 14
stage 14
stage 14
stage 17
stage 17
stage 18
Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx
Retina
dorsal and rostral cephalic ectoderm, ventral BA2
hypothalamus
19-24
stage 19
stage 20
stage 20
Neural Plate/Tube
Pharyngeal Arches and Clefts
Renal
Wing Mesenchyme
BA2 mesenchymal expression
mesonephros
25-30
stage 30
stage 30
stage 30
Midbrain
Retina
Telencephalon
proliferative neuronal layers

Entry 5

GEISHA IdHIF1a.Singh.2016Data SourcePublication
Complete cDNA Template Probeshow
GGGACTGCAGCAGTAATCAAACCATGCATATCAGAGTGGTTGTCCAGCAGCTTAGGTGTAATACACTTAAAGTTGCCTG
GAGCCCAGAGTGCACACTTCCTACTGCACCTTCTACCATGCAGTAAGGTGGGCTTGGACTGTATATCGATCTTAAAAAA
AAACCTTTGGGTATAATAGAAACATTTTACTATTAACAGTTTCCATTCCTGTTGTACGCACAAATTCCCTGACAGTAAT
TATGAATCACTTTAAAGAGACAGATGCCAGAATGAACAATTAAAACTCTACGTGCTTGCAATGAAGTAAAGGTATAGGG
ATCAAAAATTAGTACAGGTTTAATAGCTGCATATTTAGAAGTAACTTTCATTATTTCAACAGCTTCTTAAACAGCTAAA
CAAGGGCAGCTGAAGGCAGGCTTTGTAGTTAAACTGCTCAATGAATCATTTCCTTCCTTGAATCCAAGAGGCAGGAGCA
CCCTCCCACTGTGAGGCAGGCACTAGAGGATAGGCCTGAGGTCAATCATCTGTTCTCCATCCCCTCTGATTAGCTGCTA
CTGAACTGCGCACACAATTCACCCAAATGTCACTGCACTTATGGATATTGTTCAGATTGCAATTATCCAGCACAAAAAT
AAACATTTCACAGGCCAGGAATGCTCTGTAGGAAGGCCAGTATTGTCATAGGAACTCATGAGCTGAATACCCAGCTCTC
ATTAGTAATCATACGCTCAAATCCCTGG
CitationSingh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
CopyrightCopyright © 2015 Elsevier B.V. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information provided in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST648m13.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 28
Limb Buds
 
31-38
stage 31
stage 34
stage 36
stage 38
Limb Buds
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4933

Mouse

EmageMGI:106918
EurexpressMGI:106918
MGI GXDMGI:106918

Frog

Xenbase946621

Fruit Fly

BDGPFBgn0015542

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-706, ZDB-GENE-080917-55
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