GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

HOPX
HOP homeobox

Gene
Official SymbolHOPX
Official Full NameHOP homeobox
CGNC ID8667
also known asOB1, homeodomain-only protein|odd homeobox 1 protein|odd homeobox protein 1, Homeodomain-only protein, Odd homeobox protein 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204556
PolypeptideNP_989887
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.1158
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human84525ENSG00000171476MIM:607275
Mouse74318ENSMUSG00000059325All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:1916782
Xenopus780767480600
Zebrafish386589ZDB-GENE-031016-2ZFIN:ZDB-GENE-031016-2
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processheart development, histone deacetylation, lung alveolus development, more...negative regulation of transcription from RNA polymerase II promoter, positive regulation of skeletal muscle tissue regeneration, positive regulation of striated muscle cell differentiation, regulation of heart contraction, regulation of protein binding, transcription, DNA-templated, trophectodermal cell differentiation
Cellular Componentnucleus
Links to other databases
Entrez Gene395241
Ensembl GeneENSGALG00000011404
KEGGgga:395241

Entry 1

GEISHA IdChEST439a8Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCTCGAGGATGGTGAAGATCTTCAGAGTGGGTTTACTTGGGGTTCTCCTGTCACAAAAGGTTTCAAGATACAAAGCAAT
ACCCTGATATTTAAATAATTTTTATTTATAGAAGTCAGTGACTCCTACTGAGGAGCAGCTAGAGATCCTGGAGTACAAT
TTTTGCAAGGTGAACAAGCATCCTGATCCCACCACGCTGTGCCTCATTGCAGCTGAGACCGGGCTTTCTGAAGAGCAGA
CCCTGAAATGGTTCAAGCAGCGCCTGGCAGAGTGGAGGAAGTCTGAAGGGCTGCCCTCAGAATGTGGGTCTGTGAGGGA
CTAGAGGAAATCTCATGCCCTTGTCCTGGGCTCATGGAAAAGCTGCCAAGAAAGGATCAAGCACAGGAGGGAGGAATAG
AGATTTCTTTTCCCTATGATCCCAAGAGGCAAAGCATGCATGCTAGCTTTAGTATATAGAGCATCCAGAAAGGAGGGCA
ATTGGAAAACTTGATGTCTTGATCTTGTGATGTCTTGGTTAGTTTAAGGTGCCCAAGCCAGCTCTGGATATTGACAAGC
TAAGAGCCTACATCATTAACAGACTGAGCCAAGATCCTTTGAATGTATGTCTCACATTTCTGTTAAAGATCACCGAAGG
GAGAGAACTGGTCTTTTCTTTGTCCAAAGTGTGAATAAAAACCAAAGATTTTTGGTGAGAGAAC
CommentsNo specific expression detected for stages 11-25.
no images

Entry 2

GEISHA IdHOPX.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-AATGGTTCAAGCAGCGCC-3’
Reverse cDNA Template Primer5’-AATTAACCCTCACTAAAGGCTCCCTCCTGTGCTTGATCC-3’cDNA Template Length383
Complete cDNA Template Probeshow
AATGGTTCAAGCAGCGCCTGGCAGAGTGGAGGAAGTCTGAAGGGCTGCCCTCAGAATGTGGGTCTGTGAGGGACTAGAG
GATGCTGCTCCTGGCCCCATCCATGCTGTAAACGATGGTGAAGATCTTCAGAGTGGGTTTACTTGGGGTTCTCCTGTCA
CAAAAGGTTTCAAGATACAAAGCAATACCCTGATATTTAACATAATTTTTATTTATAGAAGATTATATATATATAATAT
GTATGTATATGTGTATACAGCTCCTGATGGCTGCATAACTTGTCTAGCAATTCCCATTAATAGCAGCTGCACAGGCCAG
GAAATCTCATGCCCTTGTCCTGGGCTCATGGAAAAGCTGCCAAGAAAGGATCAAGCACAGGAGGGAG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Unlabeled
 
13-18
stage 16
Unlabeled
 
19-24
stage 19
Unlabeled
 
25-26
stage 26
stage 26
stage 26
Head Mesenchyme
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.1158

Mouse

EmageMGI:1916782
EurexpressMGI:1916782
MGI GXDMGI:1916782

Frog

Xenbase480600

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-031016-2
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona