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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
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HOXA3
homeobox A3

Gene

Official Symbol	HOXA3
Official Full Name	homeobox A3
CGNC ID	49224
also known as	homeobox protein Hox-A3\|homeo box A3\|homeobox protein Hox-D3\|homeodomain protein HOXD-3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204548
Polypeptide	NP_989879
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.49158

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3200	ENSG00000105997		MIM:142954
Mouse	15400	ENSMUSG00000079560	All phenotypic alleles (12):Targeted, knock-out(2) Targeted, other(10)	MGI:96175
Xenopus	100151729, 379985			482266
Zebrafish	58049	ENSDARG00000036231	ZDB-GENE-000823-3	ZFIN:ZDB-GENE-000823-3

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	395231
Ensembl Gene
KEGG	gga:395231

Entry 1

GEISHA Id	HOXA3.Saldivar.1996	Data Source	Publication
Complete cDNA Template Probe	show AAGCTTTTTTTTTTTTCAAGGGAGTTCATAAGTTTATTAACCTTTCAAATAAATAGTGCAAGTATAGCCACCTCTTACA GTTCATTTGTCTTCAGTCTGTTAACTTGCCCTTAAATCCATCTGGTACATCTCCCTGATGAAGGCAGCACACTTGCACT CTACTTCAGACAGCGTAATAAAACTTAAAACACAGATTAAAATATTGTCCTATCATAGTTTGTTTTAATTACATCCTGT GTATATTACATTTTCAGAATGTTGCTCAGCAGCAGGAAACACAGTAACATCAGTTTTGCTCTTTCCCTTTGTGATGCAA GAAGCAGTGTCACCTTCTGCCTATTTTTGTTGGCTCATGACTAAAGAGATGGGAATTACCGCTGCACTTCTGTTCCTTG TTCCCAGTCTGAGGGGTGTCTGGCAGAAGTCAGTAAGGGTGTCAAAATACTTAAGAACATGTGTTTCGCATCTTGTTCA CAGTATGCTATTCCCTAAGAACTATCCATACAGGTAGCTTGCTTATTCTTACTGGTGAAATTTAAAGAGATCTAGAAAC CTCATTCTCTCCAGGTTGTAGGTTAATATCTTTTCCTACTGACCTTAACTCCACCTGTTTCAGAAGTTAGAATTTACTA AGAAATAAAGGACTGAATTGACCAAGCATCTTCAGTAACAGAAGATATGTAGCCACCTCTGACATACATGCAGTGCATT TTATGCACATGCATGTTTCTTATATTCTTATAGTGAAAAACAGATTTAAAATTAAGAAACGTTTGCTGCTTGGCCCACA GTATGTAAATAAATTTATCGGTGGATTATCACAGGATATCATCTCATCACTGCTCAAGAGTTAACTCAAGAGTAGTTTA AGGTTTTTAAAATCTTATATTTAACTGCAAAAGTTCATGTGTAAACTTCTTTCTGTATTTGCTTGATGGAGTGTTCAAC TCGAACACATACAAAAGACCCACCCCAATACAGTTGAACAGACAAAGTAGTCTGCCTTTATTAATGCATTAATGTATGG TGCTGTAGCTCAATGCATACCAAATTCCAGAAAGGTTAGTCTACTCCCCTTTAAGCGTGCATTTGCAAACATCTTTACT CTTAAAGAGACAAAGAAAAAAACAAAAACAAAACATGAGAGCTCTTCCTCATATGTTCAGCTCAGTAAAGAACCACTCC AGTTTGCTACATGTAAGATTTTGATTTGACAAATCTAAAAATCATAGCTACCTAAAGTAAGTTTGTGCATTTTCTTTCA ATTGCTCCTTACTAGAGCTTTCTGCATCAAATGTGCATGGCAGTTTTACTTTATTGTCATAGCCTTATTTTCTAAAGAG AAACAAGCCCCACACAATTCGTCAGCATAGGAGCTGGTGACTTTCAGCATTTTTGCTAGTCAGGATGCAGTTTAAGTGA TAGTGCAAGCAGGACATTTCTGATGATATAAGCAAAATGTTTCATTTATGCCCAGTGATGAGAAGACCACGGGAAGTTT CATGAAAATCAATGCTTGAATTCAAGCGGCACCCCGAAAAGCCCCGCTCCGGGCGGCGGCAGCGCTCCGGCCCCGGCCT CGGCGGCGGGACGAGGTCTGCCCGGAGCGGCCATTGGAGGAGCAGCGCCACGTGACAGAGGGGTGCCAATGTTATTCTC CAAGGGTGTCAAGACCCTGTCAGTTTGCGAAATAAATATTGGGAAACAACGAAATGCAAAAAGCGACCTACTACGACAG CTCTGCAATCTATGGTGCCTACCCCTACCAAGGAGCAAATGGTTTCACTTATAATGCGAGTCAGCAGCAATATCCTCCA TCTTCGTCACTTGTGGAAACTGAGTACCACCGCCCCGCGTGCTCCCTCCAGTCCCCTGGCAGCGCCGTGTCCCACCACA AGGCCAATGACATCAGTGAGAGTTGCATGAGGACTCTCCCCAGCCAGCCTCTGCAGCCCCCTGGCCTCACCGACCCGCA GGCCCCGCCGCAGCCACCTCCAGCCCCGCAGGCACAGCCTCCACCTCCATCCTCGGCCTCACCATCTCAAAATGCCAGC AGCAACCCTGCCCCGGCCAACTCCACTAAGAGCCCGGCTCTTAACTCGCCCACCGTGTCCAAACAGATATTCCCGTGGA TGAAAGAGTCTCGGCAAAACACAAAGCAGAAAAACAGCAGTTCCAGTTCAGGTGAGAGCTGTGCTGGTGATAAGAGCCC CCCAGGGCAAGCATCCTCTAAGCGAGCCCGTACGGCTTACACAAGTGCCCAGCTGGTAGAACTGGAAAAGGAGTTCCAC TTCAATAGATACCTTTGCAGGCCACGAAGGGTTGAGATGGCCAATTTGCTCAATCTCACAGAAAGACAGATCAAAATCT GGTTTCAGAACCGCAGAATGAAATACAAAAAGGATCAAAAGGGCAAGGGCATGATGACCTCTTCAGGAGGACAGTCCCC GAGCAGAAGCCCCGTCCCTCCAGCTGCTGGGGGATACCTAAACTCTATGCATTCTTTAGTAAACAGTGTCCCCTACGAG CCCCAGTCGCCTCCGCCATTTAATAAGCCTCATCAAAACACCTATGGCATCCCCGCATCGTATACCGCTCCTCTTAATA ATTGCCCACCTCCTCAAAAGAGATACACGGGGACAGCAGCTGTGACACCTGAATACGATACTCATCCTCTTCAAGGCAA CGGTTATGGGAATCCACATATACAGGGAAGCCCCGTCTACGTAGGGGGCAACTACGTGGAGACCATGACCAATTCCGGG CCTTCCATCTTTGGTCTAACTCATCTCTCTCATCCTCCCTCTGCCAACATGGACTACAGCGGGGCTGGGCCGATGGGCA ACAATCACCACCACGGACCTTGCGACCCGCACCCGACATACACAGACCTTACAGCTCACCATCCTTCTCAGGGAAGAAT TCAGGAAGCGCCCAAACTCACCCATCTGTAGGAGCCAGGAGTCACTAGGCGGAACGCAAAGCCCCAACCTTTTAAAGTA CTCGTCCCTTCCTCTCTTCTCCCCTCCCCGCCATGCGCCCTCCTCCCCTCTCTTTCTTCTTTCTTTTGCTCATTTTAGT TCGTTTCGTTTCCTTTGGTAAAAGCGTTTTCTAGTTTATGTGACGTAGCAATATTTGTTGCTTGAATTGCTCTATAGTT TCACTAGTGGATATTTATCTTCTTGAACTGCAGCCTCGTGTCTCACTTTGGGAGCATACGGAGGCTTTATACTTTACCT TCTACACTTTTATCAAAACAGGGTATATGAACAAATTTTCTATAAAAGGAATTCTTAAATGTGAATTGTGTTCGTACAT GATTGATCCCGCGGGGAAGCAATTTTTTTATTGCACTTCTTTTAAATAGCGAGAAAGACATCAGAAGCGCTTGGACAGG GATTTCCCTGGACAGTTATTGATACGTGTAAGTCTTTCAATGTGTGTATGCTGGTGAACATTCAGATTTATTTATATTA TTTTTTTTTTTTGCAAACATTGAATAATCTAAGTGTTTAAAATTTTATTTATCCCCATTTGTTCATATTTATATATATA TATAAAAAAACCTGTACCCTGAATATTCAGGAGGTATTTACCTGGCCATGTGTTAGATGGCATATCGGCACGCGTAGGA AATACATTTGAAAGGGAACCATAACTCCTATATTAAAATGATGAGAACTGTGATGAAGACGACGCAATAAAATCTGGGA AAAGAAAAAAGATCACAGCTTGAATAATTGATGCCCGTAACATCCAGATAGGGGGAAAGAAGGCGTGTGAAGCTGAAAG GCTTAGATTTGTGTTGAAAGTTATACATTACCTTGCTGCTCACGTTCTGAAAACAAAAAAAATAATAAAGTTTTTATT
Citation	Saldivar JR, Krull CE, Krumlauf R, Ariza-McNaughton L, Bronner-Fraser M., Rhombomere of origin determines autonomous versus environmentally regulated expression of Hoxa-3 in the avian embryo., Development. 1996 Mar;122(3):895-904.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Bronner-Fraser
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_204548.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 8

stage 10

stage 12

Central Nervous System
Neural Crest
Rhombomeres
Spinal Cord

13-17

stage 14

stage 16

stage 17

Cranial Ganglion
Cranial Nerve
Ear/Otic Placode
Neural Crest
Pharyngeal Arches and Clefts
Rhombomeres

double labeled with DiI

Entry 2

GEISHA Id	HOXA3.Paxton.2010	Data Source	Publication
Complete cDNA Template Probe	show AAGCTTTTTTTTTTTTCAAGGGAGTTCATAAGTTTATTAACCTTTCAAATAAATAGTGCAAGTATAGCCACCTCTTACA GTTCATTTGTCTTCAGTCTGTTAACTTGCCCTTAAATCCATCTGGTACATCTCCCTGATGAAGGCAGCACACTTGCACT CTACTTCAGACAGCGTAATAAAACTTAAAACACAGATTAAAATATTGTCCTATCATAGTTTGTTTTAATTACATCCTGT GTATATTACATTTTCAGAATGTTGCTCAGCAGCAGGAAACACAGTAACATCAGTTTTGCTCTTTCCCTTTGTGATGCAA GAAGCAGTGTCACCTTCTGCCTATTTTTGTTGGCTCATGACTAAAGAGATGGGAATTACCGCTGCACTTCTGTTCCTTG TTCCCAGTCTGAGGGGTGTCTGGCAGAAGTCAGTAAGGGTGTCAAAATACTTAAGAACATGTGTTTCGCATCTTGTTCA CAGTATGCTATTCCCTAAGAACTATCCATACAGGTAGCTTGCTTATTCTTACTGGTGAAATTTAAAGAGATCTAGAAAC CTCATTCTCTCCAGGTTGTAGGTTAATATCTTTTCCTACTGACCTTAACTCCACCTGTTTCAGAAGTTAGAATTTACTA AGAAATAAAGGACTGAATTGACCAAGCATCTTCAGTAACAGAAGATATGTAGCCACCTCTGACATACATGCAGTGCATT TTATGCACATGCATGTTTCTTATATTCTTATAGTGAAAAACAGATTTAAAATTAAGAAACGTTTGCTGCTTGGCCCACA GTATGTAAATAAATTTATCGGTGGATTATCACAGGATATCATCTCATCACTGCTCAAGAGTTAACTCAAGAGTAGTTTA AGGTTTTTAAAATCTTATATTTAACTGCAAAAGTTCATGTGTAAACTTCTTTCTGTATTTGCTTGATGGAGTGTTCAAC TCGAACACATACAAAAGACCCACCCCAATACAGTTGAACAGACAAAGTAGTCTGCCTTTATTAATGCATTAATGTATGG TGCTGTAGCTCAATGCATACCAAATTCCAGAAAGGTTAGTCTACTCCCCTTTAAGCGTGCATTTGCAAACATCTTTACT CTTAAAGAGACAAAGAAAAAAACAAAAACAAAACATGAGAGCTCTTCCTCATATGTTCAGCTCAGTAAAGAACCACTCC AGTTTGCTACATGTAAGATTTTGATTTGACAAATCTAAAAATCATAGCTACCTAAAGTAAGTTTGTGCATTTTCTTTCA ATTGCTCCTTACTAGAGCTTTCTGCATCAAATGTGCATGGCAGTTTTACTTTATTGTCATAGCCTTATTTTCTAAAGAG AAACAAGCCCCACACAATTCGTCAGCATAGGAGCTGGTGACTTTCAGCATTTTTGCTAGTCAGGATGCAGTTTAAGTGA TAGTGCAAGCAGGACATTTCTGATGATATAAGCAAAATGTTTCATTTATGCCCAGTGATGAGAAGACCACGGGAAGTTT CATGAAAATCAATGCTTGAATTCAAGCGGCACCCCGAAAAGCCCCGCTCCGGGCGGCGGCAGCGCTCCGGCCCCGGCCT CGGCGGCGGGACGAGGTCTGCCCGGAGCGGCCATTGGAGGAGCAGCGCCACGTGACAGAGGGGTGCCAATGTTATTCTC CAAGGGTGTCAAGACCCTGTCAGTTTGCGAAATAAATATTGGGAAACAACGAAATGCAAAAAGCGACCTACTACGACAG CTCTGCAATCTATGGTGCCTACCCCTACCAAGGAGCAAATGGTTTCACTTATAATGCGAGTCAGCAGCAATATCCTCCA TCTTCGTCACTTGTGGAAACTGAGTACCACCGCCCCGCGTGCTCCCTCCAGTCCCCTGGCAGCGCCGTGTCCCACCACA AGGCCAATGACATCAGTGAGAGTTGCATGAGGACTCTCCCCAGCCAGCCTCTGCAGCCCCCTGGCCTCACCGACCCGCA GGCCCCGCCGCAGCCACCTCCAGCCCCGCAGGCACAGCCTCCACCTCCATCCTCGGCCTCACCATCTCAAAATGCCAGC AGCAACCCTGCCCCGGCCAACTCCACTAAGAGCCCGGCTCTTAACTCGCCCACCGTGTCCAAACAGATATTCCCGTGGA TGAAAGAGTCTCGGCAAAACACAAAGCAGAAAAACAGCAGTTCCAGTTCAGGTGAGAGCTGTGCTGGTGATAAGAGCCC CCCAGGGCAAGCATCCTCTAAGCGAGCCCGTACGGCTTACACAAGTGCCCAGCTGGTAGAACTGGAAAAGGAGTTCCAC TTCAATAGATACCTTTGCAGGCCACGAAGGGTTGAGATGGCCAATTTGCTCAATCTCACAGAAAGACAGATCAAAATCT GGTTTCAGAACCGCAGAATGAAATACAAAAAGGATCAAAAGGGCAAGGGCATGATGACCTCTTCAGGAGGACAGTCCCC GAGCAGAAGCCCCGTCCCTCCAGCTGCTGGGGGATACCTAAACTCTATGCATTCTTTAGTAAACAGTGTCCCCTACGAG CCCCAGTCGCCTCCGCCATTTAATAAGCCTCATCAAAACACCTATGGCATCCCCGCATCGTATACCGCTCCTCTTAATA ATTGCCCACCTCCTCAAAAGAGATACACGGGGACAGCAGCTGTGACACCTGAATACGATACTCATCCTCTTCAAGGCAA CGGTTATGGGAATCCACATATACAGGGAAGCCCCGTCTACGTAGGGGGCAACTACGTGGAGACCATGACCAATTCCGGG CCTTCCATCTTTGGTCTAACTCATCTCTCTCATCCTCCCTCTGCCAACATGGACTACAGCGGGGCTGGGCCGATGGGCA ACAATCACCACCACGGACCTTGCGACCCGCACCCGACATACACAGACCTTACAGCTCACCATCCTTCTCAGGGAAGAAT TCAGGAAGCGCCCAAACTCACCCATCTGTAGGAGCCAGGAGTCACTAGGCGGAACGCAAAGCCCCAACCTTTTAAAGTA CTCGTCCCTTCCTCTCTTCTCCCCTCCCCGCCATGCGCCCTCCTCCCCTCTCTTTCTTCTTTCTTTTGCTCATTTTAGT TCGTTTCGTTTCCTTTGGTAAAAGCGTTTTCTAGTTTATGTGACGTAGCAATATTTGTTGCTTGAATTGCTCTATAGTT TCACTAGTGGATATTTATCTTCTTGAACTGCAGCCTCGTGTCTCACTTTGGGAGCATACGGAGGCTTTATACTTTACCT TCTACACTTTTATCAAAACAGGGTATATGAACAAATTTTCTATAAAAGGAATTCTTAAATGTGAATTGTGTTCGTACAT GATTGATCCCGCGGGGAAGCAATTTTTTTATTGCACTTCTTTTAAATAGCGAGAAAGACATCAGAAGCGCTTGGACAGG GATTTCCCTGGACAGTTATTGATACGTGTAAGTCTTTCAATGTGTGTATGCTGGTGAACATTCAGATTTATTTATATTA TTTTTTTTTTTTGCAAACATTGAATAATCTAAGTGTTTAAAATTTTATTTATCCCCATTTGTTCATATTTATATATATA TATAAAAAAACCTGTACCCTGAATATTCAGGAGGTATTTACCTGGCCATGTGTTAGATGGCATATCGGCACGCGTAGGA AATACATTTGAAAGGGAACCATAACTCCTATATTAAAATGATGAGAACTGTGATGAAGACGACGCAATAAAATCTGGGA AAAGAAAAAAGATCACAGCTTGAATAATTGATGCCCGTAACATCCAGATAGGGGGAAAGAAGGCGTGTGAAGCTGAAAG GCTTAGATTTGTGTTGAAAGTTATACATTACCTTGCTGCTCACGTTCTGAAAACAAAAAAAATAATAAAGTTTTTATT
Citation	Paxton CN, Bleyl SB, Chapman SC, Schoenwolf GC. Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright	2009 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204548).

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Ear/Otic Placode
Ectoderm
Endoderm
Mesoderm
Primitive Streak

7-11

stage 9

stage 11

Ear/Otic Placode
Endoderm
Hindbrain
Mesoderm
Neural Plate/Tube
Primitive Streak
Somites

Entry 3

GEISHA Id	HOXA3.Grevellec.2011	Data Source	Publication
Complete cDNA Template Probe	show CTTTCATCTGCTGTCTCCGGGCTGTCTGGCGGGGGGAGAGGCCGGTGAAGGGCTGAGAGGTGTACTGCGCAAATGGGGA CGGATGGACCCTCTGAAACGGGCGCTGGCAAATCTGGGGGCCCGCTTCTTTTGGCCTTTTGTCTTCGGTGGGGGCGAGG AGCGCTTTTCCCATCGCAGGCACCGGTTTGGGTGGCAAACCTTCCGCCTTCCGCCCTCCGCTCCCCCCCACCCCCGCCA GCTCCCGTTAGGGTGCTGCTATTATCCGCTCCTTGTCGCTATAAATCCCGCTAGTGCTGTTTTCGCGAGTAATGGCCGT GCGCTGCTCAGGTTACCCTAACTTTTAGGAAGTGATTAACTCCCGCAGCCAAAGGCGGGGGCCGATTTTCCTTCGCTGG CGGGCGGCCGAATTTTCACTCGTATTTTGCCTTCGAGGCGCAGCCGCCCATTGTCGGCGCGGCGGGAGCGCAGCTTTGC GCGGAACATTGCGCGGCCGCCGCTCTGCCCGCCGGCGGCACCCGGCAAACCTGGGAGCGCCCGGGGAAGGCGAAACGTT TGGTGCGGACATCACGAAAGGCTGTTCCCTTCCTGTCGTCGCGGTGCCTACGTTCCCTCTTTCTGAAGGAAAGGAATTG AGAAAAATCACACCAGGCCCAGATATCGTTAGGGAAGAGAGGCGAGGAGCTGGAGGTGGTGTCCGCGCCTCAGATCTTG ATTGTCTTATTAGCTTAATAACAGCCGGAGAGGTTGATTAGTGCAATAATGGGGCTGCCGCCTTGCTGTAGGTGCGCTA CCTTCGTTTGGTTGGGATGCAACAAAGGAAAGGCTGTCTTCTAAGAACTTGTATAACTTGAAAGGCGCAGAATGAGATC GTTTGGTGCATGTGTTGCCTAAGACATTTCGCCCCTAAGCATTTGTCGTCGTTAGATGTTTTGGGGGAAAATAGCCAGC TGCTTAAGCGCGGGGGAAGTGGCGAAGAGATCAGAGCTGTTCTGACCCGAAAGAACGGAGCTGTTGGTCAGGAAGGGGA GAGGGAACGGCGAGCAGCAAGCTGTGATTTCTGAGAACAATGTATGTGCGTGTGGGACGAGCTGCTGGATGGGAGATGG CGTACAGGTCTCCTCTCTCATTAGTGCGGGCCATTCTTGGGCTGGTTATTTTCAGGTCTGCCCGGAGCGGCCATTGGAG GAGCAGCGCCACGTGACAGAGGGGTGCCAATGTTATTCTCCAAGGGTGTCAAGACCCTGTCAGTTTGCGAAATAAATAT TGGGAAACAACGAAATGCAAAAAGCGACCTACTACGACAGCTCTGCAATCTATGGTGCCTACCCCTACCAAGGAGCAAA TGGTTTCACTTATAATGCGAGTCAGCAGCAATATCCTCCATCTTCGTCACTTGTGGAAACTGAGTACCACCGCCCCGCG TGCTCCCTCCAGTCCCCTGGCAGCGCCGTGTCCCACCACAAGGCCAATGACATCAGTGAGAGTTGCATGAGGACTCTCC CCAGCCAGCCTCTGCAGCCCCCTGGCCTCACCGACCCGCAGGCCCCGCCGCAGCCACCTCCAGCCCCGCAGGCACAGCC TCCACCTCCATCCTCGGCCTCACCATCTCAAAATGCCAGCAGCAACCCTGCCCCGGCCAACTCCACTAAGAGCCCGGCT CTTAACTCGCCCACCGTGTCCAAACAGATATTCCCGTGGATGAAAGAGTCTCGGCAAAACACAAAGCAGAAAAACAGCA GTTCCAGTTCAGGTGAGAGCTGTGCTGGTGATAAGAGCCCCCCAGGGCAAGCATCCTCTAAGCGAGCCCGTACGGCTTA CACAAGTGCCCAGCTGGTAGAACTGGAAAAGGAGTTCCACTTCAATAGATACCTTTGCAGGCCACGAAGGGTTGAGATG GCCAATTTGCTCAATCTCACAGAAAGACAGATCAAAATCTGGTTTCAGAACCGCAGAATGAAATACAAAAAGGATCAAA AGGGCAAGGGCATGATGACCTCTTCAGGAGGACAGTCCCCGAGCAGAAGCCCCGTCCCTCCAGCTGCTGGGGGATACCT AAACTCTATGCATTCTTTAGTAAACAGTGTCCCCTACGAGCCCCAGTCGCCTCCGCCATTTAATAAGCCTCATCAAAAC ACCTATGGCATCCCCGCATCGTATACCGCTCCTCTTAATAATTGCCCACCTCCTCAAAAGAGATACACGGGGACAGCAG CTGTGACACCTGAATACGATACTCATCCTCTTCAAGGCAACGGTTATGGGAATCCACATATACAGGGAAGCCCCGTCTA CGTAGGGGGCAACTACGTGGAGACCATGACCAATTCCGGGCCTTCCATCTTTGGTCTAACTCATCTCTCTCATCCTCCC TCTGCCAACATGGACTACAGCGGGGCTGGGCCGATGGGCAACAATCACCACCACGGACCTTGCGACCCGCACCCGACAT ACACAGACCTTACAGCTCACCATCCTTCTCAGGGAAGAATTCAGGAAGCGCCCAAACTCACCCATCTGTAGGAGCCAGG AGTCACTAGGCGGAACGCAAAGCCCCAACCTTTTAAAGTACTCGTCCCTTCCTCTCTCTCTCCCCTCCCCGCCATGCGC CCTCCTCCCCTCTCTTTCTTCTTTCTTTTGCTCATTTTAGTTCGTTTCGTTTCCTTTGGTAAAAGCGTTTTCTAGTTTA TGTGACGTAGCAATATTTGTTGCTTGAATTGCTCTATAGTTTCACTAGTGGATATTTATCTTCTTGAACTGCAGCCTCG TGTCTCACTTTGGGAGCATACGGAGGCTTTATACTTTACCTTCTACACTTTTATCAAAACAGGGTATATGAACAAATTT TCTATAAAAGGAATTCTTAAATGTGAATTTGTTCGTACATGATTGATCCCGCGGGGAAGCAATTTTTTTATTGCACTTC TTTTAAATAGCGAGAAAGACATCAGAAGCGCTTGGACAGGGATTCCCTGGACAGTTATTGATACGTGTAAGTCTTTCAA TGTGTGTATGCTGGTGAACATTCAGATTTATTTATATTATTTTTTTTTTTTGCAAACATTGAATAATCTAAGTGTTTAA AATTTTATTTATCCCCATTTGTTCATATTTATATATATATATAAAAAAACCTGTACCCTGAATATTCAGGAGGTATTTA CCTGGCCATGTGTTAGATGGCATATCGGCACGCGTAGGAAATACATTTGAAAGGGAACCATAACTCCTATATTAAAATG ATGAGAACTGTGATGAAGACGACGCAATAAAATCTGGGAAAAGAAAAAAGATCACAGCTTGAATAATTGATGCCCGTAA CATCCAGATAGGGGGAAAGAAGGCGTGTGAAGCTGAAAGGCTTAGATTTGTGTTGAAAGTTATACATTCCTTGCTGCTC ACGTTCTGAAAACAAAAAAAATAATAAAGTTTTTATTCTGAATAA
Citation	Grevellec A, Graham A, Tucker AS. Shh signalling restricts the expression of Gcm2 and controls the position of the developing parathyroids. Dev Biol. 2011 May 15;353(2):194-205. Epub 2011 Feb 22.
Copyright	Copyright © 2011 Elsevier Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205032.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Pharyngeal Arches and Clefts

all

Entry 4

GEISHA Id	HOXA3.Guidato.2003	Data Source	Publication
Complete cDNA Template Probe	show AAGCTTTTTTTTTTTTCAAGGGAGTTCATAAGTTTATTAACCTTTCAAATAAATAGTGCAAGTATAGCCACCTCTTACA GTTCATTTGTCTTCAGTCTGTTAACTTGCCCTTAAATCCATCTGGTACATCTCCCTGATGAAGGCAGCACACTTGCACT CTACTTCAGACAGCGTAATAAAACTTAAAACACAGATTAAAATATTGTCCTATCATAGTTTGTTTTAATTACATCCTGT GTATATTACATTTTCAGAATGTTGCTCAGCAGCAGGAAACACAGTAACATCAGTTTTGCTCTTTCCCTTTGTGATGCAA GAAGCAGTGTCACCTTCTGCCTATTTTTGTTGGCTCATGACTAAAGAGATGGGAATTACCGCTGCACTTCTGTTCCTTG TTCCCAGTCTGAGGGGTGTCTGGCAGAAGTCAGTAAGGGTGTCAAAATACTTAAGAACATGTGTTTCGCATCTTGTTCA CAGTATGCTATTCCCTAAGAACTATCCATACAGGTAGCTTGCTTATTCTTACTGGTGAAATTTAAAGAGATCTAGAAAC CTCATTCTCTCCAGGTTGTAGGTTAATATCTTTTCCTACTGACCTTAACTCCACCTGTTTCAGAAGTTAGAATTTACTA AGAAATAAAGGACTGAATTGACCAAGCATCTTCAGTAACAGAAGATATGTAGCCACCTCTGACATACATGCAGTGCATT TTATGCACATGCATGTTTCTTATATTCTTATAGTGAAAAACAGATTTAAAATTAAGAAACGTTTGCTGCTTGGCCCACA GTATGTAAATAAATTTATCGGTGGATTATCACAGGATATCATCTCATCACTGCTCAAGAGTTAACTCAAGAGTAGTTTA AGGTTTTTAAAATCTTATATTTAACTGCAAAAGTTCATGTGTAAACTTCTTTCTGTATTTGCTTGATGGAGTGTTCAAC TCGAACACATACAAAAGACCCACCCCAATACAGTTGAACAGACAAAGTAGTCTGCCTTTATTAATGCATTAATGTATGG TGCTGTAGCTCAATGCATACCAAATTCCAGAAAGGTTAGTCTACTCCCCTTTAAGCGTGCATTTGCAAACATCTTTACT CTTAAAGAGACAAAGAAAAAAACAAAAACAAAACATGAGAGCTCTTCCTCATATGTTCAGCTCAGTAAAGAACCACTCC AGTTTGCTACATGTAAGATTTTGATTTGACAAATCTAAAAATCATAGCTACCTAAAGTAAGTTTGTGCATTTTCTTTCA ATTGCTCCTTACTAGAGCTTTCTGCATCAAATGTGCATGGCAGTTTTACTTTATTGTCATAGCCTTATTTTCTAAAGAG AAACAAGCCCCACACAATTCGTCAGCATAGGAGCTGGTGACTTTCAGCATTTTTGCTAGTCAGGATGCAGTTTAAGTGA TAGTGCAAGCAGGACATTTCTGATGATATAAGCAAAATGTTTCATTTATGCCCAGTGATGAGAAGACCACGGGAAGTTT CATGAAAATCAATGCTTGAATTCAAGCGGCACCCCGAAAAGCCCCGCTCCGGGCGGCGGCAGCGCTCCGGCCCCGGCCT CGGCGGCGGGACGAGGTCTGCCCGGAGCGGCCATTGGAGGAGCAGCGCCACGTGACAGAGGGGTGCCAATGTTATTCTC CAAGGGTGTCAAGACCCTGTCAGTTTGCGAAATAAATATTGGGAAACAACGAAATGCAAAAAGCGACCTACTACGACAG CTCTGCAATCTATGGTGCCTACCCCTACCAAGGAGCAAATGGTTTCACTTATAATGCGAGTCAGCAGCAATATCCTCCA TCTTCGTCACTTGTGGAAACTGAGTACCACCGCCCCGCGTGCTCCCTCCAGTCCCCTGGCAGCGCCGTGTCCCACCACA AGGCCAATGACATCAGTGAGAGTTGCATGAGGACTCTCCCCAGCCAGCCTCTGCAGCCCCCTGGCCTCACCGACCCGCA GGCCCCGCCGCAGCCACCTCCAGCCCCGCAGGCACAGCCTCCACCTCCATCCTCGGCCTCACCATCTCAAAATGCCAGC AGCAACCCTGCCCCGGCCAACTCCACTAAGAGCCCGGCTCTTAACTCGCCCACCGTGTCCAAACAGATATTCCCGTGGA TGAAAGAGTCTCGGCAAAACACAAAGCAGAAAAACAGCAGTTCCAGTTCAGGTGAGAGCTGTGCTGGTGATAAGAGCCC CCCAGGGCAAGCATCCTCTAAGCGAGCCCGTACGGCTTACACAAGTGCCCAGCTGGTAGAACTGGAAAAGGAGTTCCAC TTCAATAGATACCTTTGCAGGCCACGAAGGGTTGAGATGGCCAATTTGCTCAATCTCACAGAAAGACAGATCAAAATCT GGTTTCAGAACCGCAGAATGAAATACAAAAAGGATCAAAAGGGCAAGGGCATGATGACCTCTTCAGGAGGACAGTCCCC GAGCAGAAGCCCCGTCCCTCCAGCTGCTGGGGGATACCTAAACTCTATGCATTCTTTAGTAAACAGTGTCCCCTACGAG CCCCAGTCGCCTCCGCCATTTAATAAGCCTCATCAAAACACCTATGGCATCCCCGCATCGTATACCGCTCCTCTTAATA ATTGCCCACCTCCTCAAAAGAGATACACGGGGACAGCAGCTGTGACACCTGAATACGATACTCATCCTCTTCAAGGCAA CGGTTATGGGAATCCACATATACAGGGAAGCCCCGTCTACGTAGGGGGCAACTACGTGGAGACCATGACCAATTCCGGG CCTTCCATCTTTGGTCTAACTCATCTCTCTCATCCTCCCTCTGCCAACATGGACTACAGCGGGGCTGGGCCGATGGGCA ACAATCACCACCACGGACCTTGCGACCCGCACCCGACATACACAGACCTTACAGCTCACCATCCTTCTCAGGGAAGAAT TCAGGAAGCGCCCAAACTCACCCATCTGTAGGAGCCAGGAGTCACTAGGCGGAACGCAAAGCCCCAACCTTTTAAAGTA CTCGTCCCTTCCTCTCTTCTCCCCTCCCCGCCATGCGCCCTCCTCCCCTCTCTTTCTTCTTTCTTTTGCTCATTTTAGT TCGTTTCGTTTCCTTTGGTAAAAGCGTTTTCTAGTTTATGTGACGTAGCAATATTTGTTGCTTGAATTGCTCTATAGTT TCACTAGTGGATATTTATCTTCTTGAACTGCAGCCTCGTGTCTCACTTTGGGAGCATACGGAGGCTTTATACTTTACCT TCTACACTTTTATCAAAACAGGGTATATGAACAAATTTTCTATAAAAGGAATTCTTAAATGTGAATTGTGTTCGTACAT GATTGATCCCGCGGGGAAGCAATTTTTTTATTGCACTTCTTTTAAATAGCGAGAAAGACATCAGAAGCGCTTGGACAGG GATTTCCCTGGACAGTTATTGATACGTGTAAGTCTTTCAATGTGTGTATGCTGGTGAACATTCAGATTTATTTATATTA TTTTTTTTTTTTGCAAACATTGAATAATCTAAGTGTTTAAAATTTTATTTATCCCCATTTGTTCATATTTATATATATA TATAAAAAAACCTGTACCCTGAATATTCAGGAGGTATTTACCTGGCCATGTGTTAGATGGCATATCGGCACGCGTAGGA AATACATTTGAAAGGGAACCATAACTCCTATATTAAAATGATGAGAACTGTGATGAAGACGACGCAATAAAATCTGGGA AAAGAAAAAAGATCACAGCTTGAATAATTGATGCCCGTAACATCCAGATAGGGGGAAAGAAGGCGTGTGAAGCTGAAAG GCTTAGATTTGTGTTGAAAGTTATACATTACCTTGCTGCTCACGTTCTGAAAACAAAAAAAATAATAAAGTTTTTATT
Citation	Guidato S, Prin F, Guthrie S. Somatic motoneurone specification in the hindbrain: the influence of somite-derived signals, retinoic acid and Hoxa3. Development. 2003 Jul;130(13):2981-96.
Copyright	Published by The Company of Biologists 2003. This material is protected by a copyright retained by the authors.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204548.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

25-29

stage 28

stage 29

Rhombomeres

Entry 5

GEISHA Id	HOXA3.Garcia-Dominguez.200	Data Source	Publication
Complete cDNA Template Probe	show AAGCTTTTTTTTTTTTCAAGGGAGTTCATAAGTTTATTAACCTTTCAAATAAATAGTGCAAGTATAGCCACCTCTTACA GTTCATTTGTCTTCAGTCTGTTAACTTGCCCTTAAATCCATCTGGTACATCTCCCTGATGAAGGCAGCACACTTGCACT CTACTTCAGACAGCGTAATAAAACTTAAAACACAGATTAAAATATTGTCCTATCATAGTTTGTTTTAATTACATCCTGT GTATATTACATTTTCAGAATGTTGCTCAGCAGCAGGAAACACAGTAACATCAGTTTTGCTCTTTCCCTTTGTGATGCAA GAAGCAGTGTCACCTTCTGCCTATTTTTGTTGGCTCATGACTAAAGAGATGGGAATTACCGCTGCACTTCTGTTCCTTG TTCCCAGTCTGAGGGGTGTCTGGCAGAAGTCAGTAAGGGTGTCAAAATACTTAAGAACATGTGTTTCGCATCTTGTTCA CAGTATGCTATTCCCTAAGAACTATCCATACAGGTAGCTTGCTTATTCTTACTGGTGAAATTTAAAGAGATCTAGAAAC CTCATTCTCTCCAGGTTGTAGGTTAATATCTTTTCCTACTGACCTTAACTCCACCTGTTTCAGAAGTTAGAATTTACTA AGAAATAAAGGACTGAATTGACCAAGCATCTTCAGTAACAGAAGATATGTAGCCACCTCTGACATACATGCAGTGCATT TTATGCACATGCATGTTTCTTATATTCTTATAGTGAAAAACAGATTTAAAATTAAGAAACGTTTGCTGCTTGGCCCACA GTATGTAAATAAATTTATCGGTGGATTATCACAGGATATCATCTCATCACTGCTCAAGAGTTAACTCAAGAGTAGTTTA AGGTTTTTAAAATCTTATATTTAACTGCAAAAGTTCATGTGTAAACTTCTTTCTGTATTTGCTTGATGGAGTGTTCAAC TCGAACACATACAAAAGACCCACCCCAATACAGTTGAACAGACAAAGTAGTCTGCCTTTATTAATGCATTAATGTATGG TGCTGTAGCTCAATGCATACCAAATTCCAGAAAGGTTAGTCTACTCCCCTTTAAGCGTGCATTTGCAAACATCTTTACT CTTAAAGAGACAAAGAAAAAAACAAAAACAAAACATGAGAGCTCTTCCTCATATGTTCAGCTCAGTAAAGAACCACTCC AGTTTGCTACATGTAAGATTTTGATTTGACAAATCTAAAAATCATAGCTACCTAAAGTAAGTTTGTGCATTTTCTTTCA ATTGCTCCTTACTAGAGCTTTCTGCATCAAATGTGCATGGCAGTTTTACTTTATTGTCATAGCCTTATTTTCTAAAGAG AAACAAGCCCCACACAATTCGTCAGCATAGGAGCTGGTGACTTTCAGCATTTTTGCTAGTCAGGATGCAGTTTAAGTGA TAGTGCAAGCAGGACATTTCTGATGATATAAGCAAAATGTTTCATTTATGCCCAGTGATGAGAAGACCACGGGAAGTTT CATGAAAATCAATGCTTGAATTCAAGCGGCACCCCGAAAAGCCCCGCTCCGGGCGGCGGCAGCGCTCCGGCCCCGGCCT CGGCGGCGGGACGAGGTCTGCCCGGAGCGGCCATTGGAGGAGCAGCGCCACGTGACAGAGGGGTGCCAATGTTATTCTC CAAGGGTGTCAAGACCCTGTCAGTTTGCGAAATAAATATTGGGAAACAACGAAATGCAAAAAGCGACCTACTACGACAG CTCTGCAATCTATGGTGCCTACCCCTACCAAGGAGCAAATGGTTTCACTTATAATGCGAGTCAGCAGCAATATCCTCCA TCTTCGTCACTTGTGGAAACTGAGTACCACCGCCCCGCGTGCTCCCTCCAGTCCCCTGGCAGCGCCGTGTCCCACCACA AGGCCAATGACATCAGTGAGAGTTGCATGAGGACTCTCCCCAGCCAGCCTCTGCAGCCCCCTGGCCTCACCGACCCGCA GGCCCCGCCGCAGCCACCTCCAGCCCCGCAGGCACAGCCTCCACCTCCATCCTCGGCCTCACCATCTCAAAATGCCAGC AGCAACCCTGCCCCGGCCAACTCCACTAAGAGCCCGGCTCTTAACTCGCCCACCGTGTCCAAACAGATATTCCCGTGGA TGAAAGAGTCTCGGCAAAACACAAAGCAGAAAAACAGCAGTTCCAGTTCAGGTGAGAGCTGTGCTGGTGATAAGAGCCC CCCAGGGCAAGCATCCTCTAAGCGAGCCCGTACGGCTTACACAAGTGCCCAGCTGGTAGAACTGGAAAAGGAGTTCCAC TTCAATAGATACCTTTGCAGGCCACGAAGGGTTGAGATGGCCAATTTGCTCAATCTCACAGAAAGACAGATCAAAATCT GGTTTCAGAACCGCAGAATGAAATACAAAAAGGATCAAAAGGGCAAGGGCATGATGACCTCTTCAGGAGGACAGTCCCC GAGCAGAAGCCCCGTCCCTCCAGCTGCTGGGGGATACCTAAACTCTATGCATTCTTTAGTAAACAGTGTCCCCTACGAG CCCCAGTCGCCTCCGCCATTTAATAAGCCTCATCAAAACACCTATGGCATCCCCGCATCGTATACCGCTCCTCTTAATA ATTGCCCACCTCCTCAAAAGAGATACACGGGGACAGCAGCTGTGACACCTGAATACGATACTCATCCTCTTCAAGGCAA CGGTTATGGGAATCCACATATACAGGGAAGCCCCGTCTACGTAGGGGGCAACTACGTGGAGACCATGACCAATTCCGGG CCTTCCATCTTTGGTCTAACTCATCTCTCTCATCCTCCCTCTGCCAACATGGACTACAGCGGGGCTGGGCCGATGGGCA ACAATCACCACCACGGACCTTGCGACCCGCACCCGACATACACAGACCTTACAGCTCACCATCCTTCTCAGGGAAGAAT TCAGGAAGCGCCCAAACTCACCCATCTGTAGGAGCCAGGAGTCACTAGGCGGAACGCAAAGCCCCAACCTTTTAAAGTA CTCGTCCCTTCCTCTCTTCTCCCCTCCCCGCCATGCGCCCTCCTCCCCTCTCTTTCTTCTTTCTTTTGCTCATTTTAGT TCGTTTCGTTTCCTTTGGTAAAAGCGTTTTCTAGTTTATGTGACGTAGCAATATTTGTTGCTTGAATTGCTCTATAGTT TCACTAGTGGATATTTATCTTCTTGAACTGCAGCCTCGTGTCTCACTTTGGGAGCATACGGAGGCTTTATACTTTACCT TCTACACTTTTATCAAAACAGGGTATATGAACAAATTTTCTATAAAAGGAATTCTTAAATGTGAATTGTGTTCGTACAT GATTGATCCCGCGGGGAAGCAATTTTTTTATTGCACTTCTTTTAAATAGCGAGAAAGACATCAGAAGCGCTTGGACAGG GATTTCCCTGGACAGTTATTGATACGTGTAAGTCTTTCAATGTGTGTATGCTGGTGAACATTCAGATTTATTTATATTA TTTTTTTTTTTTGCAAACATTGAATAATCTAAGTGTTTAAAATTTTATTTATCCCCATTTGTTCATATTTATATATATA TATAAAAAAACCTGTACCCTGAATATTCAGGAGGTATTTACCTGGCCATGTGTTAGATGGCATATCGGCACGCGTAGGA AATACATTTGAAAGGGAACCATAACTCCTATATTAAAATGATGAGAACTGTGATGAAGACGACGCAATAAAATCTGGGA AAAGAAAAAAGATCACAGCTTGAATAATTGATGCCCGTAACATCCAGATAGGGGGAAAGAAGGCGTGTGAAGCTGAAAG GCTTAGATTTGTGTTGAAAGTTATACATTACCTTGCTGCTCACGTTCTGAAAACAAAAAAAATAATAAAGTTTTTATT
Citation	Garcia-Dominguez M, Poquet C, Garel S, Charnay P. PIASxβ acts as an activator of Hoxb1 and is antagonized by Krox20 during hindbrain segmentation. EMBO J. 2006 June 7; 25(11): 24322442. Published online 2006 May 4.
Copyright	Copyright © 2006, European Molecular Biology Organization
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204548.1 ).