GEISHA - A Chicken Embryo Gene Expression Database
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HOXA4
homeobox A4

Gene
Official SymbolHOXA4
Official Full Namehomeobox A4
CGNC ID49256
also known asHOX1.4, chox-1.4, homeobox protein Hox-A4|homeobox protein Hox-1.4, Hox-A4, Homeobox protein Hox-A4, Chox-1.4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001030346
PolypeptideNP_001025517
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4243
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3201ENSG00000197576MIM:142953
Mouse15401ENSMUSG00000000942All phenotypic alleles (3):Targeted, knock-out(3) MGI:96176
Xenopus486675
Zebrafish58050ENSDARG00000036231ZDB-GENE-000823-4ZFIN:ZDB-GENE-000823-4
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395307
Ensembl Gene
KEGGgga:395307

Entry 1

GEISHA IdChEST427P4Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TGGAGAAGGAGTTCCACTTCAACCGCTACCTGACCAGGAGGCGACGCATCGAGATCGCGCACACCCTGTGCCTCTCCGA
GCGCCAGGTCAAGATCTGGTTCCAGAACCGGCGCATGAAGTGGAAGAAGGACCACAAGCTGCCCAACACCAAGATGCGC
TCCTCCAACCAGCCCTCGCTCGGCCAGCAGCAGGCCAAGGCACAGACACAGGGCCACCCCCGCCCGCTCGACGGGGCTG
CGCCCAACGCGGCCGCGCTATAAGGGGCTCGTTGTTCTTGTTTTTTTTTTTAATATATAGATCTCTATTTACCTATCTA
TGGGGGTTGTGCGGCCGCCCGCGCTGGCGGTTGGCCCTTGGGACCACGCAACTGTGTAAGACAAAGCAGGAGCAGGGGA
AGGAAGGACGAGACGTGCCCAGGGATGGGCACACGTTGAAACCAAAACCCGGACGATTGCCTACATTGTATATAGATAA
TGGTTCCATGCCCGTCATTTTTACTATTTATGGAAACCCTCTCTTGCCCTCGCTGTAAGAGTGCTGGATGCTGTCACGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Primitive Streak
Tail
caudal
13-18
stage 15
stage 18
Spinal Cord
Trunk Mesenchyme
 
19-21
stage 21
stage 21
Somatopleure
Somites
Spinal Cord
 

Entry 2

GEISHA IdHOXA4.Barak.2012Data SourcePublication
Complete cDNA Template Probeshow
GGCCTCGCCGAGCCCAGAAAAACGACAACGCGAGAAAAATTAGTATTTTTGCACTTCACAAATTAATGACCATGAGTTC
GTTTTTGATAAACTCCAACTACATCGAGCCCAAATTCCCTCCCTGCGAGGAGTACACGCAGCACAGCGGCAGCGCCGGC
AGCTCCGCCAGCTACCACCCGCACCACCCGCACCCGCACGCCCCACCACCGCCGCCGCCGCCGCCGCCGCCGCACCTGC
ACGCCGCGCACCCGGGCCCCGCTCTGCCCGAGTACTTCCCGCGGCCCCGCCGGGAACCCGGCTACCAGGCTCCCGCCGC
GCCGCCGGGGCCGCCGGGGCCGCCTCCCGAGGCGCTGTACCCGGCGCAGGCACCCTCCTACCCCCAGGCTCCCTACAGC
TACAGCAGCGCCGGCAGCGCCGCCCCGGGCCCCGAGCAGCCGCCCCCGGGCGCCTCTCCGCCGCCGCCGCCGCCGGCCA
AGGGCCACCCCGGGCCGGCCCAGCCCCTGCTCCCCGGCCATGCCCTGCAGCGCCGCTGCGAAGCGGCCCCCGCCGCCGG
GGCCGGCACCGGGCCGGGCTGCGCGTTGCTGCCCGACAAGAGCCTGCCCGGGCTGAAGGGGAAGGAGCCGGTGGTGTAC
CCCTGGATGAAGAAGATCCACGTGAGCACGGTCAACCCCAACTACAGCGGCGGGGAGCCCAAGCGGTCCCGCACCGCCT
ACACCCGACAGCAGGTCCTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGACCAGGAGGCGACGCATCGAGAT
CGCGCACACCCTGTGCCTCTCCGAGCGCCAGGTCAAGATCTGGTTCCAGAACCGGCGCATGAAGTGGAAGAAGGACCAC
AAGCTGCCCAACACCAAGATGCGCTCCTCCAACCAGCCCTCGCTCGGCCAGCAGCAGGCCAAGGCACAGACACAGGGCC
ACCCCCGCCCGCTCGACGGGGCTGCGCCCAACGCGGCCGCGCTATAAGGGGCTCGTTGTTCTTGTTTGTTTTTTTTTAA
TATATAGATCTCTATTTACCTATCTATTGGGGTTGTGCGGCCGCCCGCGCTGGCGGCTGCGCCCCTTGGCACCACGCAA
CTGTGTAAGACAAAGCAGGAGCAGGGAAGGAAGGACGAGAGCTGCCCAGGGAGCGGGCACACGTTGAAACCAAAACCCG
GACGATTGCCTACATTGTATATAGATAATGGTTCCATGCCCGTCATTTTTTTTCTATTTATGGAAACCCTCTCTTGCCC
TCGCTGTAAGAGTGCTGGATGCTGTCACGGACGAATTCTCCGTACCTATGACGGACCCTTTTTTTTTGTTGTTGTTGTT
GTCGTTGTTTTTAAACAGAGAACACTTTTACAAACTAAAAGACGGTTCAAACAAAGCCAGGAGCTCGGGGGGACGCCCG
GTCGAGGCGGTGACTCGAGTGGCGTGGGCCGAGCGTGGCCGTGAGGGGCACACACGGACCCACGAGGCACAGAGCGGAC
AGTTCACCTCGGGTTAAAAACTCATGGGAAGCGTCCCCTCACGCCGTGTTGGTGTACCGGCCGTAACTTAGCTGGGTTT
CGGTGTAGCCCCGCAGTAGCTGTGATATATGAGTTTTTTTCCTCCACATTCCCCATCGCATTTATTTAAAAAGAAAAGA
ATAATAATAATAACGCTATTAAAGGCTGTGGCTGTTTTCATATTTGGCACCGTCTAAATCGTTTGGGTCCATGTACAAT
TTGTGGATTTTTTGGTGTAATGTATACAGTGCCAGATGCTGGTAATAAAGTTATTCTGTACAAAAAGAATTAAACGCTT
CGAAA
Citation Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001030346.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 5
stage 5
stage 5
Primitive Streak
 
7-11
stage 7
stage 7
stage 8
stage 8
stage 9
stage 9
stage 9
stage 10
stage 10
stage 11
stage 11
stage 11
Central Nervous System
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
Somatic Mesoderm
Somites
Tail
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4243

Mouse

EmageMGI:96176
EurexpressMGI:96176
MGI GXDMGI:96176

Frog

Xenbase486675

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-000823-4
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