Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

HOXA9
homeobox A9

Gene

Official Symbol	HOXA9
Official Full Name	homeobox A9
CGNC ID	13931
also known as	HOXA-9, homeobox protein Hox-A9
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003640734
Polypeptide	XP_003640782
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.649

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3205	ENSG00000078399		MIM:142956
Mouse	15405	ENSMUSG00000038227	All phenotypic alleles (3):Targeted, knock-out(3)	MGI:96180
Xenopus	100037070			481972
Zebrafish	58048, 58047	ENSDARG00000056819, ENSDARG00000009461	ZDB-GENE-000823-2, ZDB-GENE-000823-1	ZFIN:ZDB-GENE-000823-2, ZFIN:ZDB-GENE-000823-1

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396096
Ensembl Gene
KEGG	gga:396096

Entry 1

GEISHA Id	HOXA9.Durand.2012	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TACGTGGACTCCTTCCTGGTGCCGGAGGGGGACGAGCTGGCGGCCCCCCGCTACGCCCCCGCGCCGCTGGGGCCGCCGC CGCGCCCGGCGCTGGCCGAGCACCCCGAGCTGACCCCCTGCAGCTTCCAGCCCAAGGCGCCCGTCTTCGGCCCCCCCTG GAGCCCCGCGCACCCCGCCGGCGCCAGCGGCGTCCCCGCCGTGTACCACCCCTACGCGCACCACCAGGCGCCCGTGGCA CCGCCCGACGGCAGGTACATGCGTTCGTGGCTCGAGCCTGTGCCGGGCTCCTTGTCCTTCCCCGGGTTACCTACCAGCA GGCATTACGGCATTAAACCTGAACCGCTGGCGGCCAGAAGGGGTGACTGTACCACGTTTGACACTCACACTTTGTCTCT GTCTGATTATGCTTGTGGTTCTCCTCCAGTTGATAGGGATAAGCAAAGCCACGAAGGCGCATTCTCTGAAAACAATGGA GAAAGTGAGGCAAACGGAGAGA
Comments	The sequence below was obtained from NCBI (acc # NM_001305224.1) using the information provided in the publication as described in Durand et al.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

stage 22

Leg
Limb Buds
Wing

25-30

stage 26

stage 29

Wing

stage 31

Wing

Entry 2

GEISHA Id	Hoxa‐9.Gaunt.1996	Data Source	Publication
Complete cDNA Template Probe	show GGGTTACCTACCAGCAGGCATTACGGCATTAAACCTGAACCGCTGGCGGCCAGAAGGGGTGACTGTACCACGTTTGACA CTCACACTTTGTCTCTGTCTGATTTACCTTGTGGTTCTCCTCCAGTTGATAGGGATAAGCAAAGCCACGAAGGCGCATT CTCTGAAAACAATGGAGAAAGTGAGGCAAACGGAGAGAAACCACACATTGATCCAAATAACCCCGCTGCTAACTGGCTC CACGCGAGGTCCACCCGGAAAAAGCGCTGCCCTTACACCAAGCACCAGACGCTGGAACTGGAGAAGGAGTTTCTGTTCA ATATGTATCTCACCAGGGACCGCAGGTACGAGGTGGCCAGGCTCCTCAACCTCACCGAGAGACAAGTGAAAATCTGGTT TCAGAACAGGAGGATGAAAATGAAGAAAATCAACAAAGACCGAGCGAAGGACGAATGATGGGGATACGGGGGTTAAACG GAAAGGAAAGGAAAAAAAAAGCATAAAGTAAAACAAAACAAAACCG
Citation	Gaunt SJ, Strachan L. Temporal colinearity in expression of anterior Hox genes in developing chick embryos. Dev Dyn. 1996 Nov;207(3):270-80.
Copyright	Copyright © 1996 Wiley‐Liss, Inc.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Gaunt et al. 1996.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Primitive Streak

7-12

stage 9

stage 12

Hensen's Node
Lateral Plate Mesoderm
Primitive Streak
Somites

13-18

stage 15

Ear/Otic Placode
Neural Plate/Tube
Somites

31-44

stage 44

Entry 3

GEISHA Id	Hoxa-9.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show CAGCCCCGAATTGCGGCGGGTCGGGCGCCCGCGCCGCGCCGCGCCATGTCGGCCCCCGGGACCCTCAGCAACTACTACG TGGACTCCTTCCTGGTGCCGGAGGGGGACGAGCTGGCGGCCCCCCGCTACGCCCCCGCGCCGCTGGGGCCGCCGCCGCG CCCGGCGCTGGCCGAGCACCCCGAGCTGACCCCCTGCAGCTTCCAGCCCAAGGCGCCCGTCTTCGGCCCCCCCTGGAGC CCCGCGCACCCCGCCGGCGCCAGCGGCGTCCCCGCCGTGTACCACCCCTACGCGCACCACCAGGCGCCCGTGGCACCGC CCGACGGCAGGTACATGCGTTCGTGGCTCGAGCCTGTGCCGGGCTCCTTGTCCTTCCCCGGGTTACCTACCAGCAGGCA TTACGGCATTAAACCTGAACCGCTGGCGGCCAGAAGGGGTGACTGTACCACGTTTGACACTCACACTTTGTCTCTGTCT GATTATGCTTGTGGTTCTCCTCCAGTTGATAGGGATAAGCAAAGCCACGAAGGCGCATTCTCTGAAAACAATGGAGAAA GTGAGGCAAACGGAGAGAAACCACACATTGATCCAAATAACCCCGCTGCTAACTGGCTCCACGCGAGGTCCACCCGGAA AAAGCGCTGCCCTTACACCAAGCACCAGACGCTGGAACTGGAGAAGGAGTTTCTGTTCAATATGTATCTCACCAGGGAC CGCAGGTACGAGGTGGCCAGGCTCCTCAACCTCACCGAGAGACAAGTGAAAATCTGGTTTCAGAACAGGAGGATGAAAA TGAAGAAAATCAACAAAGACCGAGCGAAGGACGAATGATGGGGATACGGGGGTTAAACGGAAAGGAAAGGAAAAAAAAA AAGCATAAAGTAAAACAAAACAAAACAAAACAAAAAAACAAACAAAAAAAGCAAACAAAAAAATAAAAACAACAACAAC AACAAAACCCTCCCCTCGAGCCCTGCCATGCAATGCGTCTGGGTCCAGGCCTCATTTGCTTTCTCCAGGCAAATTCTGA TTCCGATTGTACCTTGCTTGTCACAGTAGCATGGAGAGGCCAGTTGCCAGGAGAGGTACAGTAAGACTTTTCATTTTCT AATAGGAAAGAAAAAGGGGGCATTAGCACGGAAACGGCTGTTGAGCTATAGCTTGTATAAATCTACCTGTTTCTTCACT TAAGAAAGAAAGAAAAAGAAAAAAAAAAGGAAAAAAAATAATAAAAAAAACCAGAACGACGAGCAAAAACTACCTTTTC CTAATGCACAACTATTTACGGACTGTATAGTTTAGCCGACGTAGTTAATTTTATTCGCTCTTTGCGCGGCGGAGAGATC TCCGCTCTAATACTTGAACACTGTGTTTTATTGTGGTAATTATGTTTGTGACTCAATTTATGTGCTTGGGTGCTGTACC GGATGTAATTGTGTAAGCTAGGATTCAATTTGAACTCAGGTTGTTTATTATAAAAATGGCATAGAGTATAGCTCTGTAG CGTATTAAGTCTTTTCTGTATAATTAGACAGTTAACCTTTGATTGTAAAGTATATATTATATATATATATCTATATCCC AATTTAAACACACACGCAAAAGTAGAGGGGGGGGGGGGAGAATAAAAAAGTTTGTCCGGGATGTCTGGGAATGACGGTT CTCAGAAGACATGGAAACGAGTCGTTTTAGTATGCACAGTTGATATATATATC
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_001305224).