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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXB2
homeobox B2

Gene

Official Symbol	HOXB2
Official Full Name	homeobox B2
BirdBase ID	BB-GG4627
CGNC ID	53816
also known as	homeobox protein Hox-B2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003642792
Polypeptide	XP_003642840
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3212	ENSG00000173917		MIM:142967
Mouse	103889	ENSMUSG00000075588	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:96183
Xenopus	100038155, 733446			478524
Zebrafish	30338	ENSDARG00000000175	ZDB-GENE-990415-103	ZFIN:ZDB-GENE-990415-103

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	429940
Ensembl Gene	ENSGALG00000025774
KEGG	gga:429940

Entry 1

GEISHA Id	HOXB2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GATGAAGCACAAGAGGCAAACACAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGACGGGATGGGGTGATTGAATGC	cDNA Template Length	537
Forward cDNA Template Probe	show NCCGGAAANNNNNNNCAAAATAAGGGGAGATTGGGTTGTTTTGGGGTGACCCCTCTCGTTTGGAGAGCTGGAGCGGCTC GGGGTGGGACAGCTTGGGATAAACAAAAAAAAAAGGAGGGAGAGCCGGGGGGGACCCCTTTTGGAAATTTAAATTGTTG CAAATCTTGGGAACAAAGGGCCCGGGAAAAAAATCCCAAATTTCCCCCCAAAAAGGGAGGGGAACTCCCCAGGGATCCC TGCAAACCCGAAAAAACTTCCGGGCAGAATTTTCCCAAAAGAATGTTAATTTCCGGCACCAAAGGAAACCCCGGGTTCT GGGAAAACCCAACCCCCAAGGGGGGGGCCCCGGGCCAATCGTTCCCCCAAGGGTTGGGGGGTTCCTCGGCTTGCCCCCC CCGTTAGGGCCCGGGGAAGGGCCCCAACGGGGGGTTTTCCTCGCCCTCTTCCGGGGTTTCGTTGCCCTCTCCAAGGCGG GGGAAACCAATTCCCCCTCCGGGGGGTTTTTTGACCGGGTTTGCCCCCTGGGGCTTAACAAA
Comments	No expression detected at or before stage 4.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Early Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

7-12

stage 9

stage 10

Intermediate Mesoderm
Neural Plate/Tube
Rhombomeres

13-18

stage 13

stage 15

stage 17

Hindbrain
Intermediate Mesoderm
Lung
Myotome
Neural Plate/Tube
Rhombomeres
Somatic Mesoderm
Somites
Spinal Cord

19-24

stage 21

stage 22

stage 23

stage 24

Anterior/Second Heart Field
Hindbrain
Lung
Myotome
Rhombomeres
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves

Section taken just above the heart.

stage 25

Anterior/Second Heart Field
Hindbrain
Lung
Myotome
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	HOXB2.Barak.2012	Data Source	Publication
Complete cDNA Template Probe	show GAACCATCATCATCACTGCCATAAAAACTGAGGCCCTCAGATTTCTTCCTCTCTTCCCCTCCTCCTTCCTCCCCCCTCC CGCTTTTTAAACCCTGGGCCCTGGAAAAGCCATGAATTTTGAATTTGAGAGGGAGATCGGGTTTATAAATAGCCAGCCT TCGCTCGCAGAGTGCCTGACGTCTCTTCCCGCTGTCCTGGAGACATTTCAAACTTCATCAATCAAGGACTCGACATTAA TTCCTCCTCCTTTTGAGCAAACCGTCCTCAGCCTGAATCCTTGTTCCAGCAGCCAGGCAAGACCGAGGAGCCAAAAAAG AGCATCCCATGGCCTGCTCCAGCCTCAGCCTCCGGCACAGCCCGGCCCCTTGGCAGCGGAATTCCCCTGGATGAAGGAG AAGAAATCGTCCAAGAAAGCTACCCAGGCTCCATCCTCGTCTTCCTCTTCTTTCCCCCCATCATCTTCCTCGGTGCCGA TCCCCGCCGCAGGATCTCCTGCAGACACGCAGGGGTTGGCAGACAGCAGCGGCTCTAGGAGGCTCCGGACAGCGTACAC CAACACACAGCTCCTGGAGCTGGAGAAGGAATTCCACTTCAACAAATACCTCTGCAGGCCCCGTCGGGTGGAAATCGCG GCTTTGCTCGACCTGACCGAGCGACAAGTCAAAGTGTGGTTCCAGAACCGCAGGATGAAGCACAAGAGGCAAACACAGT ACAAAGAACCCCCCGACGGGGACATCGCTTACCCCGGCCTGGACGAGGGCAGCGAAGCCACGGATGAGGCCGAGGAGAG CCCCGCGTTGGGGCCGTGCCCGGGGCCGTACCGGGGTGCGCAGCCCGAGCAGCCCCGCAGCCCTCGGGGTACCGATCGG CCCGGAGCCCCCCCCTCGGAGCTCGGCTTTCCCGAGAGCCAGGGCTCGCCTTGGTTGCCGGAACTCAGCATCCTCTCGG CAGAGTCCTGCCTGCAGCTCTCTCCGGCTCTGCAGGACTCCTTGGAGAGTCCCCTCCACTTCTCGGAGGAAGATCTGGA CTTTTTTACCAGCGCACTTTGTACCATAGATCTGCAACACTTCAATTTCCAATAGCGGTCCCCGCCTGTCTCTCTCTCT TTTTTTTTTTGTTTATCCCTTTCTGTCCCACCCCGAGCCGCTCCAGCTCTCCAAACGAGAGGGGGTCACCCCAAAAACA AACCCAAATCATCCCGCATTCAATCACCCCATCCCGTTCGACGGACATTTTAAAGCTCTTCAAGTTGAGGGACCCGAAT CTCAGCCGCAGTATTTATTTGAGAAGGCTCATATAAAAAGAGCTTTTTATTTACAAGATAAATTAGTTGCTAAATGGTA GGCTTGTTCCTTATTTATTTTAAAGGAGGCACCCAATAGTTTCCATGCGCATCAGAGATGACCGCCCTCGAGAGAAAAC CATTGTGAATCCTCCAAGCGACTTTCTCAGGAATCAGAATGAGCCTTTTAGATTTCTTAAGGAAATAATAATGAGAAAA AAGCAGAGGAATTTTCGTTCCTCCTTTTTAAGTTTTAGATGTAGATTATTTATTCAGATCCTTTAATAGCAAATGGCAA ATTATTTATTGTACATTATTTTCATAGAGTAAATAAATGCCTTTATAAAACCGAGGGAA
Citation	Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_003642792.1).