GEISHA - A Chicken Embryo Gene Expression Database
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HOXC10
homeobox C10

Gene
Official SymbolHOXC10
Official Full Namehomeobox C10
CGNC ID13664
also known ashomeobox protein Hox-C10|Hox C10
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_001233805
PolypeptideXP_001233806
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.20677
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3226ENSG00000180818MIM:605560
Mouse209448ENSMUSG00000022484All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1) MGI:96192
Xenopus100487723, 399206486914
Zebrafish30402ZDB-GENE-990415-110ZFIN:ZDB-GENE-990415-110
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene770471
Ensembl Gene
KEGGgga:770471

Entry 1

GEISHA IdHOXC10.1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTCCCGTCCATTCCCAGTCGTC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGCTCGTTTCCCCT CCCACAACcDNA Template Length
Forward cDNA Template Probeshow
TTTTNCCCCGGATTTCCTTTAGGTAGTGAGCATGATCCCACTGCAACTTGAATGTACAGACACTTCTATGAGCCCCCTT
TTTCGCCATTTTTATTACACAGGAGGCAGGCTAACACTAGGATATGAAAAGCAAACTTCGAGACGCACCTATTATCCTA
AACATAAAAATGCATCGAGAAAGGTCCTTCTGCTTTTGTGCTGCACGTAAATAACTTAAAACATTTGACCGGGGCGGTT
TTCAAGCCACCGCCTCCTTTATTTTACATAGAAACACGGATGCAATATATATCCTCATGCTCAGACCGCTGCATCTTCT
CTCCCTACGAACTGCAAACACCCAAATGATGGAGGTCCTTTCCTTCCCGCGTACGCATTGCATTTATACCCAGGGGAAA
AAAAAAATATATAATAAAATAAAATAACCCCCCCCAAAGGGCAAAGAGTTCCTCCTCTCTCCCCCCTCCTCCCCTTCTT
GAACCGGGGCTCGCTCAGGTGAAATTAAAATGGGACGTCAGTTCCCGGATTCGGTTCTCTCTGTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Primitive Streak
Low level expression.
4-6
stage 4
Epiblast
Primitive Streak
 
7-12
stage 8
stage 9
Anterior Intestinal Portal
Extraembryonic Mesoderm
Forebrain
Heart
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
Somites
extraembryonic ectoderm
extraembryonic endoderm
 
13-18
stage 17
stage 18
Leg
Somatic Mesoderm
Somites
Spinal Cord
Tail
 
19-24
stage 21
stage 23
Leg Mesenchyme
Somatic Mesoderm
Somites
Spinal Cord
Tail
 
25
stage 25
Leg Mesenchyme
Somatic Mesoderm
Somites
Spinal Cord
Tail
 

Entry 2

GEISHA IdHOXC10.Hughes.2011Data SourcePublication
Complete cDNA Template Probeshow
CCTCTACGCCCAATCAGCCCTTCGGAAGCAGAGAAAGAGCTGAATAAAAACACTGACACCAGCACTGACAATTCTGACA
ATGAAGCAAAAGAGGATATAAAGGCAGAAAACACTACAGGAAATTGGCTGACAGCAAAGAGCGGAAGAAAGAAAAGGTG
TCCTTACACCAAGCACCAGACGCTGGAGCTGGAGAAGGAATTCTTGTTCAATATGTACTTGACCCGTGAGCGCCGCCTG
GAGATTAGTAAGAGCATTAACCTGACAGACAGACAAGTCAAAATCTGGTTTCAGAACCGCAGGATGAAACTCAAGAAAA
TGAACAGAGAGAACCGAATCCGCGAACTGACGTCCAATTTTAATTTCACCTGAGCGAGCCCCGGTGCAGGAGGGGGAGG
AGGGGGGAGAGAGGAGGAGCTCTGTGCGCTTTGGGGGGGTTTATTTTATTTTATTATATATTTTTTTTTTCCCCTGGGT
ATAAATGCAATGCGTACGCGGGAAGGAAAGGACCTCCATCATTTGGGTGTTTGCAGTTCGTAGGGAGAGAAGATGCAGC
GGTCTGAGCATGAGGATATATATTGCATCCGTGTTTCTATGTAAAATAAAGGAGGCGGTGGCTTGAAAACCGCCCCGGT
CAAATGTTTTAAGTTATTTACGTGCAGCACAAAAGCAGAAGGACCTTTCTCGATGCATTTTTATGTTTAGGATAATAGG
TGCGTCTCGAAGTTTGCTTTTCATATCCTAGTGTTAGCCTGCCTCCTGTGTAATAAAAATGGCGAAAAATGGGGCTCAT
AGAAGTGTCTGTACATTCAAGTTGCAGTGGGATCATGCTCACATCCTGTAGTGATGCGGTTTCTTCCAATGAAGTGATG
CTATCTACCA
CitationHughes MW, Wu P, Jiang TX, Lin SJ, Dong CY, Li A, Hsieh FJ, Widelitz RB, Chuong CM. In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages Integr Biol (Camb). 2011 Apr;3(4):388-407. Epub 2011 Mar 24.
Copyright© Royal Society of Chemistry 2011
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_428107.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 26
stage 26
stage 29
Surface Ectoderm
skin

Entry 3

GEISHA IdHoxc-10.Nelson.1996Data SourcePublication
Complete cDNA Template Probeshow
CCTGGCTGGAGTATTCCTCCTTAAAAACCCTCTCTGAAAATGTCATGTCCCAACAATGTGACTTCTAACTCGTTTTTGA
TGGACTCGTTGGCCGGTACCTGTAGAGGGGAGAATTATTCCTCCAGCCAAGGGATGTACATGCAGCCTGGGAGCGATTT
CAGCTGCGGAGTCATGAGGAACTGTGGAATTATCCCGTCTCTTTCCAAAAGGGACGAGGTGAATAGCGCTACCTTGTCT
CTCAGCACCTATCCATCTTACCTTTCTCAGCTAGACACTTGGTGTGACCCCAAAAATACGTACAGGATCGAGCAACCTG
TTGCAAGACAGCTCCCATCCTGCTCCTTCCCAACCAATGTCAAGGAAGAGAATGTTTGCTGTATGTATAACGCTGACAA
AAGGGCTAAAAATGCCACAGAGGCAGCCCTCTACCCCAACCAAATGCCTGAGCCTTGCCTAAATGACCATGAAGTCCCC
GTTCCTAGCTACTACCGAGCAAGCCAAGGTTACCCCTCCATGGAGAAGACGTCAAACTGCAGCAATCCAAATGAGTTTG
AGGCAAGTTTTGAATCCAGGGCGAGCCTGAACCCAAGGAACGAGCATCTGGAACCAGCACCACCACCTCCTCCTCCTCC
TCCTCCTCCGCCCCCGGTGGCTAAAGTGAGTTTCCCCGAAAACACAAAAACAGATAATACTCAGAACACATCCACGAAC
GAAATTAAAACAGAAAAAAGCGCCCCAGCACCCAAAATCAGCCCTTCGGAAGCAGAGAAAGAGCTGAATAAAAACACTG
ACACCAGCACTGACAATTCTGACAATGAAGCAAAAGAGGATATAAAGGCAGAAAACACTACAGGAAATTGGCTGACAGC
AAAGAGCGGAAGAAAGAAAAGGTGTCCTTACACCAAGCACCAGACGCTGGAGCTGGAGAAGGAATTCTTGTTCAATATG
TACTTGACCCGTGAGCGCCGCCTGGAGATTAGTAAGAGCATTAACCTGACAGACAGACAAGTCAAAATCTGGTTTCAGA
ACCGCAGGATGAAACTCAAGAAAATGAACAGAGAGAACCGAATCCGCGAACTGACGTCCAATTTTAATTTCACCTGAGC
GAGCCCCGGTGCAGGAGGGGGAGGAGGGGGGAGAGAGGAGGAGCTCTGTGCGCTTTGGGGGGGTTTATTTTATTTTATT
ATATATTTTTTTTTTCCCCTGGGTATAAATGCAATGCGTACGCGGGAAGGAAAGGACCTCCATCATTTGGGTGTTTGCA
GTTCGTAGGGAGAGAAGATGCAGCGGTCTGAGCATGAGGATATATATTGCATCCGTGTTTCTATGTAAAATAAAGGAGG
CGGTGGCTTGAAAACCGCCCCGGTCAAATGTTTTAAGTTATTTACGTGCAGCACAAAAGCAGAAGGACCTTTCTCGATG
CATTTTTATGTTTAGGATAATAGGTGCGTCTCGAAGTTTGCTTTTCATATCCTAGTGTTAGCCTGCCTCCTGTGTAATA
AAAATGGCGAAAAATGGGGCTCATAGAAGTGTCTGTACATTCAAGTTGCAGTGGGATCATGCTCACATCCTGTAGTGAT
GCGGTTTCTTCCAATGAAGTGATGCTATCTACCATATATTTAAGACAAAAGAAATAATAATT
CitationNelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
CopyrightCopyright © 1996 by Company of Biologists
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_001305260).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 23
stage 23
stage 23
stage 23
Leg
Unlabeled
 
25-30
stage 25
Leg
 
31-44
stage 44
stage 44
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.20677

Mouse

EmageMGI:96192
EurexpressMGI:96192
MGI GXDMGI:96192

Frog

Xenbase486914

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-110
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