GEISHA - A Chicken Embryo Gene Expression Database
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HOXD10
homeobox D10

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolHOXD10
Official Full Namehomeobox D10
CGNC ID56632
also known asChox-4d, homeobox protein Hox-D10|Hox D10
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_001234538
PolypeptideXP_001234539
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3236ENSG00000128710MIM:142984MIM:142984
Mouse15430All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1) MGI:96202
Xenopus100038085, 399032485203
Zebrafish30404ENSDARG00000057859ZDB-GENE-990415-116ZFIN:ZDB-GENE-990415-116
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene771246
Ensembl GeneENSGALG00000009270
KEGGgga:771246

Entry 1

GEISHA IdHOXD10.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAGACATTGGGACTTATGGGATGC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGTTTCCACTTGAGAGACTTTAGCCGcDNA Template Length530
Forward cDNA Template Probeshow
CGNCCTGGCCGTTCGGGTTTTCATTCATTTTCTTTTCCATCTGAAGTTGAGAAGATAGCTGCGGTTTGGAGCTGCCGCG
CAGGGTTTAACTGTAACATTACGGTTGAACTCGTTTCAGGGCTATTATTGTACTCTTGGGTTTTCCCAGTGGCGTAGGT
CTGGCTCAGTCTAAAATATCCTGGGACGGGAACCTCGGGGTTCTCAATGGGGCATGATTCAGACACCAGCCTCTGGTAG
GAAGGGACGTCTGAAGAAATGAGTTTGGTTCTCTTATCGGAATACATGCAGCAATTGCTTTCTTCCTTAATATTTGTAG
TGAAGGAACAAGTGGGGACCTGCTGTGTAACAGGTTGCTCTATTCGACAAGATCTGTTCGGATCTGTCCAACTGTCTAC
TTGAGGTATATAAGGATGTACATTCATACCCATATTTTGGTGATTAACTTCTCTTTTAGCCAGAGACGGTAGGAGTCCA
CAGGTTTGCATCCCATAAGTCCCCAATGTCTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Primitive Streak
Low level expression.
4-6
stage 4
stage 5
Area Opaca
Early Endoderm
Epiblast
Extraembryonic Mesoderm
Primitive Streak
Low level expression.
7-12
stage 7
stage 9
stage 9
stage 9
stage 11
Blood Vessels
Ectoderm
Extraembryonic
Extraembryonic Mesoderm
Forebrain
Head Mesenchyme
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Spinal Cord
 
13-18
stage 17
Lateral Plate Mesoderm
Spinal Cord
Tail
 
19-24
stage 19
stage 21
Forebrain
Foregut
Hindbrain
Leg Mesenchyme
Lung
Midbrain
Sclerotome
Wing Mesenchyme
 
25
stage 25
Widespread Expression
 

Entry 2

GEISHA IdHOXD10.Winslow.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCTACCGTCTCTGGCTAAAAGAG
AAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGTTGGACAGATCCGAACAGATC
TTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATATTAAGGAAGAAAGCAATTGC
TGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAGGCTGGTGTCTGAATCATGCC
CCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCCACTGGGAAAACCCAAGAGTA
CAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCTCCAAACCGCAGCTATCTTCT
CAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAAAGTCTCTCAAGTGGAAAGTC
CCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCCAGCCCCGAGGTCCAGGAGAA
GGAGACTAAAGGTCTGTATTACCGAGCTTGA
CitationWinslow BB, Takimoto-Kimura R, Burke AC. Global patterning of the vertebrate mesoderm. Dev Dyn. 2007 Sep;236(9):2371-81.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
Leg
Tail
Wing
 

Entry 3

GEISHA IdHOXD-10.Reid.2002Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
ATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCTACCGTCTCTGGCTAAAAGAG
AAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGTTGGACAGATCCGAACAGATC
TTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATATTAAGGAAGAAAGCAATTGC
TGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAGGCTGGTGTCTGAATCATGCC
CCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCCACTGGGAAAACCCAAGAGTA
CAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCTCCAAACCGCAGCTATCTTCT
CAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAAAGTCTCTCAAGTGGAAAGTC
CCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCCAGCCCCGAGGTCCAGGAGAA
GGAGACTAAAGGTCTGTATTACCGAGCTTGA
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 35
stage 44
Dermis
Feathers/Scutae
Surface Ectoderm
Comparison of several genes

Entry 4

GEISHA IdHoxd-10.Nelson.1996Data SourcePublication
Complete cDNA Template Probeshow
ATGTCCTTTCCCAACAGCTCTCCTGCCGCTAATACTTTTTTAGTAGATTCTCTCATCAGTGCGTGCAGGAGTGACAGTT
TCTACTCCAACAGCGCCAGCATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCT
ACCGTCTCTGGCTAAAAGAGAAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGT
TGGACAGATCCGAACAGATCTTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATA
TTAAGGAAGAAAGCAATTGCTGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAG
GCTGGTGTCTGAATCATGCCCCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCC
ACTGGGAAAACCCAAGAGTACAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCT
CCAAACCGCAGCTATCTTCTCAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAA
AGTCTCTCAAGTGGAAAGTCCCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCC
AGCCCCGAGGTCCAGGAGAAGGAGACTAAAGAGGAAATCAAGTCTGATACTCCAACGAGCAATTGGCTAACTGCAAAGA
GTGGCAGAAAGAAGAGGTGCCCTTACACTAAACACCAAACACTGGAATTAGAGAAAGAGTTCTTATTCAATATGTATCT
CACCCGAGAGCGCCGCCTAGAGATCAGTAAGAGCGTAAACCTCACTGACAGGCAGGTCAAGATTTGGTTTCAAAACCGC
AGAATGAAGCTCAAGAAGATGAGCAGGGAGAACCGAATCCGAGAACTGACCGCTAATCTGACCTTCTCCTAAGGCGTTC
CCGGGGGTGGCAACAGCGAGCAGTGGGCACGGCACCGCCGGTGCCACGTGGGGGAGAGACTGTGGCAGAACCGTCCTTT
TCCTTTTATTTTCTGGTAGAATGTGACTCTTCGTCCTTCTTTTAGCGCTGCAAGTGAATATGTATTACTATGACGAGTA
TATATAAAACCTAGCACGTGTAATTTATTTTTGTTCTCATCGTAATGCAGGGTAACTATTATTGAATATTATCATTTGG
TCTTAACTTATTGGAACTGTCGAACATCCAAGCAATGTGACTTTTTTTTTCATGTTTTTACTAACAAAATGGTATTTAT
GTGGGGCTGTTACACGGGCCATAACGTTTGGAGTACGTTCACTACTTTAAGAAACGGGGGGGGGGGGGGGAAACTTTGG
GGGGGGGGGGAAAGAGAAGCACATCGCAATGTAACTATCCTCGCAAATGAACTTAGAGGTCGTCCTTCGTAAAATGGAA
TCTTTCATTCCTCTCCATTGTAGACATTTTCTTGTGGTGCATATGTGGAATAGTAGTCGTTCAGCAGCAATATGTCCTT
CTTGTGCATGTTCTGTTCGCATGTATAATGCAATAAACTCTGTAAACTACTGCGGTCCCTTTGGTTTTCTACAAACGTT
CCCGGTGCGGATGCAGGTTGCTTTCCTGACCCTCCCTCGCCAGCGGCTCCTGGGCCTGGTGCTCCTTCTCCTCCTCGTT
CTGCTCTTTGTGTGTCTCTGCCCGGGCTTCGGTCTTTCTTTTTCCCTTTTTCTTTGTTTTCTTTCCTTTCCTTTTCTTT
CCCTTCCCTTTTTTTTTTATTATTTAGGGGTGGGGAGGAGACTGGGGCGGGAAATGATGTAAACCCGAATCAGTTATAG
TTGTGCCTGTAAACAAATGATTAATTGATCGAACGTTGTGATGTTCGCAGTCTGACAATCAGAACGCAGAAACAGAACA
AAAAAGGGAAAAAAATGGGGGAAAAAATAAAAAAGGAAAAGGAAAAAAAATGTAGAGAGAGAGGAGGGGAAAAAAAAGA
AAGAGAGAGAAAAAAAAGTTGTAAAATATGATGACCCAAACTGGACATCCTCATCCAATCAGCTCATAAATGAGGTGCT
CGCTGCATCACCCGAGGAGTTCAGCAGTGGGAACTCATTCCCTGGCCCTACACCGAGTGCTCCACGCACACAGAAAGAA
AGGAGGTTCGCCCCAGCCCGTACCGACCCGTACGTGTGCGGCAGGGCCGCCCGCCATGCGCCCGCTGCCAGAGGAGTAA
CAGAGGAGACTGAAACGCAGAGGAAAGGCGAGAGCGAGATGGGCAAAGCCGAACAGTAAAAATAAAAAGAGAAAA
CitationNelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
CopyrightCopyright © 1996 by Company of Biologists
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 19
stage 23
stage 23
stage 23
stage 23
Leg
Wing
 
25-30
stage 25
stage 25
stage 25
stage 25
stage 27
stage 27
stage 27
stage 27
Leg
Wing
 
31-44
stage 44
stage 44
  

Entry 5

GEISHA IdHoxd10.Yakushiji-Kaminatsui.2018Data SourcePublication
Complete cDNA Template Probeshow
ATGTCCTTTCCCAACAGCTCTCCTGCCGCTAATACTTTTTTAGTAGATTCTCTCATCAGTGCGTGCAGGAGTGACAGTT
TCTACTCCAACAGCGCCAGCATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCT
ACCGTCTCTGGCTAAAAGAGAAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGT
TGGACAGATCCGAACAGATCTTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATA
TTAAGGAAGAAAGCAATTGCTGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAG
GCTGGTGTCTGAATCATGCCCCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCC
ACTGGGAAAACCCAAGAGTACAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCT
CCAAACCGCAGCTATCTTCTCAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAA
AGTCTCTCAAGTGGAAAGTCCCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCC
AGCCCCGAGGTCCAGGAGAAGGAGACTAAAGAGGAAATCAAGTCTGATACTCCAACGAGCAATTGGCTAACTGCAAAGA
GTGGCAGAAAGAAGAGGTGCCCTTACACTAAACACCAAACACTGGAATTAGAGAAAGAGTTCTTATTCAATATGTATCT
CACCCGAGAGCGCCGCCTAGAGATCAGTAAGAGCGTAAACCTCACTGACAGGCAGGTCAAGATTTGGTTTCAAAACCGC
AGAATGAAGCTCAAGAAGATGAGCAGGGAGAACCGAATCCGAGAACTGACCGCTAATCTGACCTTCTCCTAAGGCGTTC
CCGGGGGTGGCAACAGCGAGCAGTGGGCACGGCACCGCCGGTGCCACGTGGGGGAGAGACTGTGGCAGAACCGTCCTTT
TCCTTTTATTTTCTGGTAGAATGTGACTCTTCGTCCTTCTTTTAGCGCTGCAAGTGAATATGTATTACTATGACGAGTA
TATATAAAACCTAGCACGTGTAATTTATTTTTGTTCTCATCGTAATGCAGGGTAACTATTATTGAATATTATCATTTGG
TCTTAACTTATTGGAACTGTCGAACATCCAAGCAATGTGACTTTTTTTTTCATGTTTTTACTAACAAAATGGTATTTAT
GTGGGGCTGTTACACGGGCCATAACGTTTGGAGTACGTTCACTACTTTAAGAAACGGGGGGGGGGGGGGGAAACTTTGG
GGGGGGGGGGAAAGAGAAGCACATCGCAATGTAACTATCCTCGCAAATGAACTTAGAGGTCGTCCTTCGTAAAATGGAA
TCTTTCATTCCTCTCCATTGTAGACATTTTCTTGTGGTGCATATGTGGAATAGTAGTCGTTCAGCAGCAATATGTCCTT
CTTGTGCATGTTCTGTTCGCATGTATAATGCAATAAACTCTGTAAACTACTGCGGTCCCTTTGGTTTTCTACAAACGTT
CCCGGTGCGGATGCAGGTTGCTTTCCTGACCCTCCCTCGCCAGCGGCTCCTGGGCCTGGTGCTCCTTCTCCTCCTCGTT
CTGCTCTTTGTGTGTCTCTGCCCGGGCTTCGGTCTTTCTTTTTCCCTTTTTCTTTGTTTTCTTTCCTTTCCTTTTCTTT
CCCTTCCCTTTTTTTTTTATTATTTAGGGGTGGGGAGGAGACTGGGGCGGGAAATGATGTAAACCCGAATCAGTTATAG
TTGTGCCTGTAAACAAATGATTAATTGATCGAACGTTGTGATGTTCGCAGTCTGACAATCAGAACGCAGAAACAGAACA
AAAAAGGGAAAAAAATGGGGGAAAAAATAAAAAAGGAAAAGGAAAAAAAATGTAGAGAGAGAGGAGGGGAAAAAAAAGA
AAGAGAGAGAAAAAAAAGTTGTAAAATATGATGACCCAAACTGGACATCCTCATCCAATCAGCTCATAAATGAGGTGCT
CGCTGCATCACCCGAGGAGTTCAGCAGTGGGAACTCATTCCCTGGCCCTACACCGAGTGCTCCACGCACACAGAAAGAA
AGGAGGTTCGCCCCAGCCCGTACCGACCCGTACGTGTGCGGCAGGGCCGCCCGCCATGCGCCCGCTGCCAGAGGAGTAA
CAGAGGAGACTGAAACGCAGAGGAAAGGCGAGAGCGAGATGGGCAAAGCCGAACAGTAAAAATAAAAAGAGAAAA
CitationNayuta Yakushiji-Kaminatsui, Lucille Lopez-Delisle, Christopher Chase Bolt, Guillaume Andrey, Leonardo Beccari, Denis Duboule. Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. PLoS Biol. 2018 Nov 26;16(11):e3000004. DOI: 10.1371/journal.pbio.3000004.
CopyrightCopyright © 2018 Yakushiji-Kaminatsui et al.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538.5)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-28
stage 28
stage 28
Leg
Wing
 
all
 
  

Mouse

EmageMGI:96202
EurexpressMGI:96202
MGI GXDMGI:96202

Frog

Xenbase485203

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-116
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