GEISHA - A Chicken Embryo Gene Expression Database
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HOXD11
homeobox D11

Gene
Official SymbolHOXD11
Official Full Namehomeobox D11
CGNC ID7045
also known asGHOX4.6, homeobox protein Hox-D11|Hox D11|chox-4.6|chox-4E|ghox-4.6|homeo box D11|homeobox protein Hox-4.6|homeobox protein Hox-4E|homeodomain-containing protein
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_204620
PolypeptideNP_989951
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395328
Ensembl Gene
KEGGgga:395328

Entry 1

GEISHA IdHOXD11.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTGTCGCAATCGTCTTCCTGTC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGTCAGTGAGGTTGAGCATTCTGGcDNA Template Length644
Forward cDNA Template Probeshow
AAAATTGCATTGATTGGCACTGCAGCCTTTTCCTTGGTTTGGAACCGTTGGAGAAAACTCCCGTTCCCGTTTCTTTATC
TGATATTTTGGTATAGGGACACCCTCTTTTTTCTCCATCGCTGAGGAACTGATGTGTTGTTGTTCTTCGCTGCAACCTC
CTCGGGAGGAGGAGAAGCGGCGCCCCCCGCCGTTGTCTTTTTCTTCTCCTGGGCAGGAGGCGTCTTGCTGGAGGTGCTG
TGGTGGGGCTTCTACTCCCTGTTGGCGGCGCCCCCCTCCCCCTAGTACTGCTGGTAGTACGGGGGCGCGGGGGGCTCCT
CGTAATAGTTGAAGAACTCCTGCCGGAAGATGGTCCTCCTCCCCCCCCAGCCCAAAATGTTGGCGGCGGGGGGGGCCCC
CTCGTGGTGGCCCCACACGGGCTTCTTTTTTAATATTTTTTTCCTCCTGCTGTTCGGGGGGTGAAAAAAATCTTTGTGC
CTCTCCTCCTCTGATTAATAAGAAGGGGCCCTACCCCCCCTGTGCTGGCATTTGCCCCCCTCTTATTCTTTTTTGCCTG
ATGCCTCCTCCCCCAGATGGTGGACATGGAGTTTATTAAAAAAATTAAGAATCCTTTTTTGTGGGGAATAATGTTGCAA
CAAAA
CommentsNo specific expression observed at or before stage 7.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 8
stage 8
stage 10
stage 10
Anterior Intestinal Portal
Ectoderm
Forebrain
Head Mesenchyme
Heart
Heart Tube
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Sinus Venosus
Unlabeled
extraembryonic ectoderm
Stages 6 & 7.
13-18
stage 13
stage 16
stage 17
Ear/Otic Placode
Eye
Forebrain
Heart
Hindbrain
Hindgut
Intermediate Mesoderm
Leg
Leg Mesenchyme
Neural Plate/Tube
Paraxial Mesoderm
Somatic Mesoderm
Somites
Tail
 
19-24
stage 20
stage 23
stage 23
stage 24
stage 24
Hindgut
Leg Mesenchyme
Tail
Wing Mesenchyme
 
25-29
stage 25
stage 29
stage 29
stage 29
Hindgut
Leg
Leg Mesenchyme
Tail
Wing
Wing Mesenchyme
 

Entry 2

GEISHA IdHOXD-11.Reid.2002Data SourcePublication
Complete cDNA Template Probeshow
AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA
TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA
CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT
GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC
CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC
GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG
CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG
ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG
CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG
AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA
GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA
GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA
GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationReid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
CopyrightCopyright © 2007 UBC Press
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204620).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 28
stage 30
stage 30
Dermis
Face Mesenchyme
Feathers/Scutae
Spinal Cord
Spinal Ganglia and Nerves
Surface Ectoderm
Vertebrae
Beak
Egg tooth
Tongue
31-44
stage 32
stage 34
stage 34
stage 34
stage 35
stage 36
stage 44
stage 44
Dermis
Face Mesenchyme
Feathers/Scutae
Spinal Cord
Spinal Ganglia and Nerves
Surface Ectoderm
Beak
Comparison of several genes
Egg tooth
Tongue

Entry 3

GEISHA IdHOXD11.Gamer.2001Data SourcePublication
Complete cDNA Template Probeshow
AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA
TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA
CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT
GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC
CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC
GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG
CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG
ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG
CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG
AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA
GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA
GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA
GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationGamer LW, Cox KA, Small C, Rosen V (2001). Gdf11 is a negative regulator of chondrogenesis and myogenesis in the developing chick limb. Dev Biol. 2001 Jan 15;229(2):407-20.
CopyrightCopyright © 2000 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204620).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
Wing
 

Entry 4

GEISHA IdGHOX4.6.Rogina.1992Data SourcePublication
Complete cDNA Template Probeshow
AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA
TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA
CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT
GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC
CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC
GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG
CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG
ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG
CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG
AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA
GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA
GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA
GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationRogina B, Coelho CN, Kosher RA, Upholt WB. The pattern of expression of the chicken homolog of HOX1I in the developing limb suggests a possible role in the ectodermal inhibition of chondrogenesis. Dev Dyn. 1992 Jan;193(1):92-101.
Copyright0 1992 WILEY-LISS, INC.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # M81249.1).
no images

Entry 5

GEISHA IdHOXD11.Vargas.2008Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA
TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA
CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT
GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC
CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC
GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG
CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG
ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG
CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG
AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA
GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA
GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA
GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204620.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
Leg
Wing
 
25-30
stage 26
stage 26
stage 29
stage 29
stage 30
stage 30
Leg
Wing
 
31-34
stage 34
stage 34
stage 34
Leg
Wing
 

Entry 6

GEISHA IdHoxd-11.Nelson.1996Data SourcePublication
Complete cDNA Template Probeshow
AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA
TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA
CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT
GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC
CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC
GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG
CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG
ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG
CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG
AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA
GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA
GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA
GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationNelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
CopyrightCopyright © 1996 by Company of Biologists
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_204620).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 19
stage 23
stage 23
stage 23
stage 23
Leg
Wing
 
25-30
stage 25
stage 25
stage 25
stage 25
stage 25
stage 26
stage 27
stage 27
stage 27
stage 27
stage 29
Leg
Wing
 
31-44
stage 44
stage 44
stage 44
stage 44
  

Entry 7

GEISHA IdHoxd11.Yakushiji-Kaminatsui.2018Data SourcePublication
Complete cDNA Template Probeshow
AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA
TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA
CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT
GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC
CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC
GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG
CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG
ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG
CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG
AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA
GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA
GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA
GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationNayuta Yakushiji-Kaminatsui, Lucille Lopez-Delisle, Christopher Chase Bolt, Guillaume Andrey, Leonardo Beccari, Denis Duboule. Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. PLoS Biol. 2018 Nov 26;16(11):e3000004. DOI: 10.1371/journal.pbio.3000004.
CopyrightCopyright © 2018 Yakushiji-Kaminatsui et al.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204620.1). Hoxd11 is also known as GHOX4.6 in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 20
stage 22
stage 22
Leg
Wing
 
25-28
stage 28
stage 28
Leg
Wing
 
all
 
 
  

Mouse

Emage
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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