GEISHA - A Chicken Embryo Gene Expression Database
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HOXD13
homeobox D13

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolHOXD13
Official Full Namehomeobox D13
CGNC ID7049
also known aschox-4.8, chox-4G, homeobox protein Hox-D13|Hox D13|homeobox protein Hox-4.8|homeobox protein Hox-4G|homeobox protein hoxd13, Homeobox protein Hox-D13, Hox-D13, Chox-4.8, Chox-4G
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205434
PolypeptideNP_990765
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4131
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3239ENSG00000128714MIM:113200MIM:142989
Mouse15433ENSMUSG00000001819All phenotypic alleles (15):Spontaneous(2) Targeted, knock-out(9) Targeted, other(4) MGI:96205
Xenopus100498102, 399207482319
Zebrafish30407ENSDARG00000059256ZDB-GENE-990415-119ZFIN:ZDB-GENE-990415-119
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396415
Ensembl Gene
KEGGgga:396415

Entry 1

GEISHA IdChEST414kL5Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
AAACCCTNAAGGGCGAAATGGNGCNCCACCGCGGGGGGGGCCGCGGNTCGCGATNTGGTTTCNCNNCCNTTTTNNNGNA
GGATNAGAAAATAGTCNCCNAACNGAAAGACNACGTNNCCTGATCGANCCCTTGCGGACAGNGGCNGATANACAACCTC
CGATTTACGACCAGCTGCGGACTTTTGGAAAGACTTGNNAATATATTTAATATTTTTTTTTCTCTTCTCCTTCCAGCGG
TGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGAGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAGCC
GTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTAAAAAAAAAAAATATTAATATTAATTATATTTTCTATCCTTCCCTCT
AGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGAGGGG
ACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAACGCG
AGTGAGCGGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCCTTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGGAAG
CAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGCGGG
CAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATGCTC
CCCACAGCAGCGCCCGGGGGTCCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGTGC
GCACGTACCTCCGTGCGGACCCCGCGCTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTCA
NTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAAAGATTCGTCTCAAAAAAAGAATTCGATATCAAGCTTAT
CGATACCCTCGACCTCGAGGGGGCCCCNTN
CommentsNo expression detected at or before stage 7.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 9
stage 10
Anterior Intestinal Portal
Anterior Neuropore
Extraembryonic Mesoderm
Forebrain
Neural Plate/Tube
Notochord
Sinus Venosus
Unlabeled
extraembryonic endoderm
Stages 6 & 7.
13-18
stage 16
stage 17
Hindgut
Leg Mesenchyme
 
19-24
stage 19
stage 23
stage 23
stage 24
stage 24
Hindgut
Leg Mesenchyme
Tail
Wing Mesenchyme
 
25-29
stage 29
stage 29
stage 29
stage 29
Hindgut
Leg Mesenchyme
Tail
Wing Mesenchyme
 

Entry 2

GEISHA IdHoxd-13.Reid.2002Data SourcePublication
Complete cDNA Template Probeshow
GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC
TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG
CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC
GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT
GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT
CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC
AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC
ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC
AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG
GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC
AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG
TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA
CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC
GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG
CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC
CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA
GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA
CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG
AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC
GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG
CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT
GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC
AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC
GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC
TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
CitationReid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
CopyrightCopyright © 2007 UBC Press
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205434).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 35
stage 44
Dermis
Spinal Cord
Surface Ectoderm
Vertebrae
Comparison of several genes

Entry 3

GEISHA IdHOXD13.Gamer.2001Data SourcePublication
Complete cDNA Template Probeshow
GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC
TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG
CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC
GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT
GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT
CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC
AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC
ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC
AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG
GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC
AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG
TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA
CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC
GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG
CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC
CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA
GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA
CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG
AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC
GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG
CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT
GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC
AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC
GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC
TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
CitationGamer LW, Cox KA, Small C, Rosen V (2001). Gdf11 is a negative regulator of chondrogenesis and myogenesis in the developing chick limb. Dev Biol. 2001 Jan 15;229(2):407-20.
CopyrightCopyright © 2000 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205434).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
Wing
 

Entry 4

GEISHA IdHOXD13.Theodosiou.2007Data SourcePublication
Complete cDNA Template Probeshow
GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC
TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG
CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC
GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT
GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT
CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC
AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC
ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC
AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG
GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC
AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG
TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA
CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC
GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG
CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC
CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA
GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA
CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG
AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC
GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG
CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT
GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC
AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC
GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC
TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
CitationTheodosiou NA, Hall DA, Jowdry AL. Comparison of acid mucin goblet cell distribution and Hox13 expression patterns in the developing vertebrate digestive tract. J Exp Zool B Mol Dev Evol. 2007 Jul 15;308(4):442-53.
CopyrightCopyright © 1999-2010 John Wiley & Sons, Inc. All Rights Reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_205434.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
stage 26
stage 26
stage 26
Endoderm
Hindgut
Leg
Mesoderm
Splanchnic Mesoderm
Tail
 

Entry 5

GEISHA IdHOXD13.Dunn.2011Data SourcePublication
Complete cDNA Template Probeshow
ATTTGGTTTCAGAACAGGAGGGTGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTT
GCGGACAGTGGCGGATATACAACCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATT
TTTTTTTCTCTTCTCCTTCCAGCGGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCT
CGGTGGAAGGGAGCGCCGACAAGCCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTAAAAAAAAAAAATATTAATATT
AATTATATTTTCTATCCTTCCCTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTT
AAATGCTTATCTCTTGGGGGAGGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGA
TNTGGTGTACTGGTCGGAAAACGCGAGTGAGCGGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCCTTGCCGGAGTCCG
CACGGGGCTCCGCGGATGTCGGAAGCAGCGGCTCCGGAAGGGAATCGTTTGCACTGCAGTGGGATCGCTCTTTTTATTC
TTTATGACTTTGATTTTGCTGGCGGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCG
TTGGATCCGAAGGGGCAGCGATGCTCCCCACAGCAGCGCCGGGGGGTCCCTCCGGGCGCCCCGGTCCATCCCGTCCGTC
CCGTCCGTCCCGTCCGAGGTGCGCCGTTCTTCGTGCGGACCC
CitationDunn IC, Paton IR, Clelland AK, Sebastian S, Johnson EJ, McTeir L, Windsor D, Sherman A, Sang H, Burt DW, Tickle C, Davey MG. The chicken polydactyly (Po) locus causes allelic imbalance and ectopic expression of Shh during limb development. Dev Dyn. 2011 May;240(5):1163-72.
CopyrightCopyright © 2011 Wiley-Liss, Inc.
CommentsProbe for HOXD13 was obtained from chicken EST ChEST414k15.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-27
stage 27
stage 27
Leg
control embryo

Entry 6

GEISHA IdHOXD13.Fisher.2008Data SourcePublication
Complete cDNA Template Probeshow
GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC
TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG
CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC
GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT
GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT
CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC
AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC
ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC
AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG
GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC
AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG
TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA
CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC
GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG
CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC
CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA
GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA
CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG
AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC
GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG
CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT
GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC
AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC
GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC
TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
CitationFisher ME, Clelland AK, Bain A, Baldock RA, Murphy P, Downie H, Tickle C, Davidson DR, Buckland RA. Integrating technologies for comparing 3D gene expression domains in the developing chick limb. Dev Biol. 2008 May 1;317(1):13-23. Epub 2008 Feb 7.
CopyrightCopyright © 2008 Elsevier Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205434.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
Limb Buds
 

Entry 7

GEISHA IdHoxd-13.Nelson.1996Data SourcePublication
Complete cDNA Template Probeshow
CTGCAGGATGTCCAACGGGGTTGGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCC
GTGGAAAAGTACATGGACGTCTCCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAG
TGTCCTCCTACCAGGGCTATACAAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGG
GGAACCGAGACACGAAACGTACATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTG
TACTGTGCCAAAGATCAGACACAGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCG
AGATGTGCGTCTACCGGCGCGGGAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAG
CitationNelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
CopyrightCopyright © 1996 by Company of Biologists
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Nelson et al. 1996.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 19
stage 23
stage 23
stage 23
stage 23
Leg
Wing
 
25-30
stage 25
stage 25
stage 25
stage 25
stage 25
stage 27
stage 27
stage 27
stage 27
Leg
Wing
 
31-44
stage 44
stage 44
stage 44
  

Entry 8

GEISHA IdHoxd13.Yakushiji-Kaminatsui.2018Data SourcePublication
Complete cDNA Template Probeshow
GGGCTGGGAGATGGACGGACTGCGCGGCGACAGCAGCGGCGGCGGCGGCGGCGGCGGCACCCCCGGGCAGTGCCGTAAC
TTTCTCTCCTCGCCCGTTTTCGGCGCGGCGCACACGGGCCGCGCGGCCGCCGCCGCCGCCGCCGCCGCCTCGGGGTTCG
CCTACGCCGGCGGAGGGGAGCGCTCGGGGGCGGCGGCGCGGCCCGACCCCCCGGCCAAGGACTGCCCGGGCTCCGGCGC
GCCGCCCGCCGCCCCCGCGCTCGGCTACGGGTATCACTTTGGCAACGGATACTATAGCTGCAGGATGTCCAACGGGGTT
GGGATCCAGCAGAACGCCCTGAAGTCTCCCCCCCATGCCTCCATTGGCGGCTTTCCCGTGGAAAAGTACATGGACGTCT
CCAGTCTGACCAGCACGAGTGTCCCCGCCAATGAAGTCTCCACCAGGGCTAAAGAAGTGTCCTCCTACCAGGGCTATAC
AAACCCCTACCAGCACGTTCCTGGGTACATAGACATGGTCTCAACGTTTGGCTCTGGGGAACCGAGACACGAAACGTAC
ATATCCATGGAGGGCTATCAGTCCTGGACTCTGGCTAATGGCTGGAACGGCCAGGTGTACTGTGCCAAAGATCAGACAC
AGAGCTCGCACTTCTGGAAATCGTCCTTTCCAGGGGACGTTGCACTAAACCAGCCCGAGATGTGCGTCTACCGGCGCGG
GAGGAAGAAGAGAGTGCCCTACACCAAGCTCCAGCTTAAGGAACTCGAGAACGAATACGCCATTAACAAGTTCATTAAC
AAGGACAAGAGGCGAAGGATATCCGCGGCCACGAACCTGTCCGAACGCCAGGTCACCATTTGGTTTCAGAACAGGAGGG
TGAAGGATAAGAAAATAGTCTCCAAACTGAAAGACAACGTTTCTTGATCGATTCCTTGCGGACAGTGGCGGATATACAA
CCTCCGTTTACGACCAGCTGCGGACTTTTGGAAAGACTTGAAAATATATTTAATATTTTTTTTCTCTTCTCCTTCCAGC
GGTGGCGAAGTTTCGTGAATTGTTTTCTATTCCCGTGAAAGCCGGCGTTGTTCTCTCGGTGGAAGGGAGCGCCGACAAG
CCGTGACTTTAGCGTTGTTTCTTCCTTCCTTTTTTTAAAAAAAAATAATATTAATATTAATTATATTTTCTATCCTTCC
CTCTAGGCCAGTATAAACGAATTTAAACGTGTCGAACGGTTCCATTTATAACTTTCTTAAATGCTTATCTCTTTGGGGA
GGGGACCCGGGGTTTTTATCTCCGAACGTCGGCCGGTGCCCGAAAGTGTCGGACTCGATTTGGTGTATTGGTCGGAAAA
CGCGAGTGAGCGCGTTCCCGCAGTCACTGCCGGCAAAAGCCGCATTGCCGGAGTCCGCACGGGGCTCCGCGGATGTCGG
AAGCAGCGGCTCCGGAAGGGAATTGTTTGCACTGCAGTGGGATCGCTCTTTTTATTCTTTATGATTTGATTTTGCTGGC
GGGCAATCTGCTACCGGCTTTTCCTGGGGTACGGAGCGCGGCCTCGGCTCCTCTCGTTGGATCCGAAGGGGCAGCGATG
CTCCCCGCAGCAGCGCCCGGGGGTCCCTCCGGCCGCCCCGTCCCATCCCGTCCCGTCCCGTCCCGTCCCGTCCCGAGGT
GCGCACGTACCTCCGTGCGGACCCCGCGTGCGCATAACGCACTTCCCGGTCGGAGAAGTGAAGTTCACCGCTAACTTTC
AGTTTGCAAAACTAAACGGGTGTTAATGACAGAAGCAATAAATGATTCGTTTCAAAAGATGCCATAATTTATGTAGGCC
GAAAGGCTGGGACTCGGTTGGGTTTTTGTAATTTTAAACCTAGCGTGCATGTTATGCTATACGCAGGGAGGTCAGCTCC
TGGGAAAGAGAAGCGATGTCCTCCCTGTTCATGTGCCTCGTGTAATTATTAAATGGTGTGTGTTTCGA
CitationNayuta Yakushiji-Kaminatsui, Lucille Lopez-Delisle, Christopher Chase Bolt, Guillaume Andrey, Leonardo Beccari, Denis Duboule. Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. PLoS Biol. 2018 Nov 26;16(11):e3000004. DOI: 10.1371/journal.pbio.3000004.
CopyrightCopyright © 2018 Yakushiji-Kaminatsui et al.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205434.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-28
stage 28
stage 28
Leg
Wing
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4131

Mouse

EmageMGI:96205
EurexpressMGI:96205
MGI GXDMGI:96205

Frog

Xenbase482319

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-119
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