GEISHA - A Chicken Embryo Gene Expression Database
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HOXB9
homeobox B9

Gene
Official SymbolHOXB9
Official Full Namehomeobox B9
CGNC ID870
also known ashomeobox protein Hox-B9
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_001233690
PolypeptideXP_001233691
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3219ENSG00000170689MIM:142964
Mouse15417ENSMUSG00000020875All phenotypic alleles (2):Targeted, knock-out(2) MGI:96190
Xenopus394474, 398337963093
Zebrafish30344ENSDARG00000056023ZDB-GENE-990415-109ZFIN:ZDB-GENE-990415-109
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene771865
Ensembl Gene
KEGGgga:771865

Entry 1

GEISHA IdHox-B9.Matsushita.2002Data SourcePublication
Complete cDNA Template Probeshow
ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA
AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA
GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT
CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA
CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA
GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT
GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA
AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG
TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAAAATG
AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
CitationMatsushita S, Ishii Y, Scotting PJ, Kuroiwa A, Yasugi S. Pre-gut endoderm of chick embryos is regionalized by 1.5 days of development. Dev Dyn. 2002 Jan;223(1):33-47.
CopyrightCopyright © 2002 Wiley-Liss., Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_001233690).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
Endoderm
Endoderm, early
Mesoderm, early
Neural Plate/Tube
posterior endoderm

Entry 2

GEISHA IdHOXB9.Sakiyama.2000Data SourcePublication
Complete cDNA Template Probeshow
ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA
AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA
GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT
CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA
CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA
GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT
GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA
AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG
TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAAAATG
AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
CitationSakiyama J, Yokouchi Y, Kuroiwa A. Coordinated expression of Hoxb genes and signaling molecules during development of the chick respiratory tract. Dev Biol. 2000 Nov 1;227(1):12-27.
CopyrightReprinted with permission from Elsevier. Copyright © 2000 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001233690).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-34
stage 34
stage 34
Lung
Abdominal Air Sac (5)
Figure 2 compares expression of the Hoxb genes in the developing chick respiratory tract at HH stages 24, 27, 29 and 34.

Entry 3

GEISHA IdHOXB9.Huber.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA
AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA
GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT
CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA
CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA
GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT
GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA
AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG
TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGNAAATG
AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
CitationHuber L, Ferdin M, Holzmann J, Stubbusch J, Rohrer H. HoxB8 in noradrenergic specification and differentiation of the autonomic nervous system. Dev Biol. 2012 Mar 1;363(1):219-33. Epub 2011 Dec 24.
CopyrightCopyright © 2011 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # XM_001233690.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
stage 11
Neural Plate/Tube
 
13-18
stage 14
stage 16
Neural Plate/Tube
 
19-24
stage 24
stage 24
Spinal Cord
Spinal Ganglia and Nerves
 
25-30
stage 27
stage 27
stage 29
stage 29
stage 30
Neural Plate/Tube
Spinal Cord
Spinal Ganglia and Nerves
Unlabeled
 
31
stage 31
stage 31
Spinal Cord
Spinal Ganglia and Nerves
Unlabeled
 

Entry 4

GEISHA IdHOXB9.Dubrulle.2001Data SourcePublication
Complete cDNA Template Probeshow
ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA
AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA
GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT
CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA
CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA
GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT
GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA
AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG
TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGNAAATG
AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
CitationDubrulle J, McGrew MJ, Pourquié O. FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal Hox gene activation. Cell. 2001 Jul 27;106(2):219-32.
CopyrightCopyright © 2001 Cell Press. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # XM_001233690.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-17
stage 17
stage 17
Neural Plate/Tube
Paraxial Mesoderm
 

Entry 5

GEISHA IdHoxb-9.Nelson.1996Data SourcePublication
Complete cDNA Template Probeshow
TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC
CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA
AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC
TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA
ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC
ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC
GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC
TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC
AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT
TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT
ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC
AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA
CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG
TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT
CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG
AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG
ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA
AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT
CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA
CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA
GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC
TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT
GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC
ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC
ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC
GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG
ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG
ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA
AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG
GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC
CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG
AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC
AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT
GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC
CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC
CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC
TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC
TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT
TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG
GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA
TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
CitationNelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
CopyrightCopyright © 1996 by Company of Biologists
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( XM_015299445).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 23
Leg
 
25-30
stage 27
stage 27
Leg
 
31-44
stage 44
  

Entry 6

GEISHA IdHoxb9.Moreau.2019Data SourcePublication
Complete cDNA Template Probeshow
TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC
CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA
AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC
TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA
ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC
ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC
GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC
TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC
AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT
TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT
ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC
AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA
CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG
TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT
CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG
AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG
ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA
AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT
CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA
CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA
GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC
TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT
GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC
ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC
ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC
GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG
ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG
ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA
AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG
GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC
CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG
AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC
AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT
GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC
CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC
CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC
TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC
TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT
TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG
GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA
TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
CitationChloe Moreau, Paolo Caldarelli, Didier Rocancourt, Julian Roussel, Nicolas Denans, Olivier Pourquie, Jerome Gros. Timed Collinear Activation of Hox Genes during Gastrulation Controls the Avian Forelimb Position. Curr Biol. 2019 Jan 7; 29(1):35-50.e4. Epub 2018 Dec 13. DOI: 10.1016/j.cub.2018.11.009.
CopyrightCopyright © 2018 The Author(s). Published by Elsevier Ltd.. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299445.2).
no images

Entry 7

GEISHA IdHoxb9.Iimura.2006Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC
CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA
AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC
TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA
ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC
ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC
GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC
TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC
AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT
TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT
ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC
AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA
CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG
TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT
CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG
AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG
ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA
AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT
CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA
CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA
GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC
TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT
GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC
ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC
ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC
GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG
ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG
ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA
AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG
GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC
CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG
AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC
AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT
GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC
CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC
CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC
TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC
TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT
TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG
GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA
TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
CitationTadahiro Iimura, Olivier Pourquié. Collinear activation of Hoxb genes during gastrulation is linked to mesoderm cell ingression. Nature. 2006 Aug 3;442(7102):568-71. Epub 2006 Jun 7. DOI: 10.1038/nature04838.
CopyrightCopyright © 2006 Nature Publishing Group.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299445.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-8
stage 7
stage 8
stage 8
Early Endoderm
Early Mesoderm
Primitive Streak
5 somites stage
6 somites stage

Entry 8

GEISHA IdHoxb9.Bel-Vialar.2002Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC
CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA
AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC
TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA
ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC
ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC
GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC
TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC
AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT
TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT
ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC
AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA
CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG
TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT
CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG
AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG
ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA
AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT
CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA
CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA
GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC
TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT
GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC
ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC
ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC
GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG
ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG
ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA
AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG
GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC
CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG
AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC
AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT
GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC
CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC
CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC
TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC
TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT
TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG
GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA
TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
CitationSophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15.
CopyrightCopyright © The Company of Biologists Limited 2002.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299445.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 9
stage 10
stage 11
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
13-17
stage 14
stage 14
stage 17
Lateral Plate Mesoderm
Paraxial Mesoderm
Spinal Cord
Tail
 

Mouse

EmageMGI:96190
EurexpressMGI:96190
MGI GXDMGI:96190

Frog

Xenbase963093

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-109
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