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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXC11
homeobox C11

Gene

Official Symbol	HOXC11
Official Full Name	homeobox C11
CGNC ID	10516
also known as	homeobox protein Hox-C11\|Hox C11
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI

Sequence Information

Genomic
RNA	XM_428250
Polypeptide	XP_428250

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3227	ENSG00000123388		MIM:605559
Mouse	109663		All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:96193
Xenopus	100487406			486584
Zebrafish	30403, 570925	ENSDARG00000070351	ZDB-GENE-990415-111, ZDB-GENE-000822-3	ZFIN:ZDB-GENE-990415-111, ZFIN:ZDB-GENE-000822-3

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	430698
Ensembl Gene
KEGG	gga:430698

Entry 1

GEISHA Id	HOXC11.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AACTCAGTGAATCTGGGCAACTTC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCACCTCTTCTTCCTCGTTCG	cDNA Template Length	693
Forward cDNA Template Probe	show GNTNCGTAGAGAGGACGCTGAGTTTGGAGAGCGGGCGGGTTGCGCTTCCAACCTCTACCTCCCCAGCTGTACCTATTAC GTCCCCGAATTTTCAACTGTGTCATCTTTCCTGCCACAGGCCCCCTCTCGCCAAATCTCCTACCCGTACTCCACCAACC TCTCGCAGCCCGTGCGAGAGGTCTCCTATGGTCTAGACCCCTCCAGTAAATGGCACCATAGAAGCAATTACGCGTCGTG TTATTCCGCAGAAGATCTGATGCATAGAGAGTGCATCCCGCCTTCCACCATGACCGAAATGCTAATGAAAAACGAGAGC GCGTACAGCCACCACCACCCCAGCTCCAACCACCCGGCACCGACGGGATTCTACGGCGGCATGAACAAAAACACGGTCC TGCCCCAAGGCTTCGACCGCTTCTTCGAAAACGCGTATTGCGGGGCGGAAAACCCGACCGAGAGCTGCGGGCAGAAGGG AGAGGGCAAAGGGGAGGCTGAGCCCCAGAGCCACGCGCTGTCATCCCGCGGAGAGACGGGGATGGACCCGGAAGACGAA GAGGAGAACACAACTCCCGGCTCTTCAGCCTCGTCCTCCTCTGTCAACAAGGAAGGAAGCAAAAGCAGCAATTCGAGTG CTCCCCGAACGAGGAAGAAGAGGTGCCTTTAGTGAGGGGTTAATAA
Comments	No expression detected at or before stage 4.

Stage

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4-6

stage 6

Early Mesoderm
Extraembryonic Mesoderm

7-12

stage 7

stage 8

stage 9

stage 11

Early Mesoderm
Ectoderm
Extraembryonic
Extraembryonic Mesoderm
Forebrain
Head Mesenchyme
Headfold
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Somites

13-18

stage 14

stage 15

stage 17

stage 18

Anterior Intestinal Portal
Forebrain
Heart
Hindbrain
Lateral Plate Mesoderm
Leg Mesenchyme
Midbrain
Neural Plate/Tube
Somites
Splanchnic Mesoderm
Tail

Overstained?

19-24

stage 21

stage 22

Allantois
Leg
Somatic Mesoderm
Spinal Cord
Tail

25-29

stage 25

stage 29

Leg
Leg Mesenchyme
Somatic Mesoderm
Spinal Ganglia and Nerves
Tail

Entry 2

GEISHA Id	Hoxc-11.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show TTTGGGAAGGGAGAGCCGCTCCTCGCATCCCCGACTTCAGGTGCTGAGGAGCTGCGGGAGGGGTTCGGGCTTTCAGGTT GAGGGTTCTGGGGGGGGATTTTTAATGTACACGTCTGTATTTTGAAAGCAATTGTTGACAAAAGTCGCGACATCGCCGC AGCAATCGGTGATCGCTGTTTGTTTCGTGTGGAAACGCAGAAGGACGGAGGGAGAGGCGGCTCTCGGGGCACGGAGGGA AGACAAACGACTTTAATAAGAAGATCTTTTTTAATTCGGCTGGAGGAATAAACGAGGAGAGCAGTGCTGAAAGCGCACG CATTGATTGACGATAAACAATTGCATTAAATATTCAATGCGCCACTCGGACGGAATAAATATTTAACCAAACGTTCAAG GAGGTTTTCGAGTATTTACCAGACACCGACCTCGTCCATTTGTCCTGCCCCTTCATCTACGACTAATTCGATATCAGAA GTCATTAAGGCCGGCCTGCTTTCCTCTCAAACTTTGCAACTTCGCACACGGCCACCGCTTAAATGGTGTCGTCGCTCCC GGCCGTGCCAACGGGCGTGATGTATAGTTGGTGTGCACATAGAGATCAACATAATTAGCGTATGTTAGAAGCTTGTTAA TTAGCACCAACCCCCCCGCAGCACATCCCCCCCCCCCCCTCCCCTCGCGCTCCCAGAGAGATGGAGGTTTCCCCGTCGT TTCGCAGCGCAGCTGTACGGAGCGCTCACCCCTGCAGCAAACGGGGCCAAATGTTCCCAAACTTACTTACGTTTTCCCC GTGATTATATTGATTTACCTAAAGTCTGTTCGGGAACACTTCTAAGAGCGGGCTAGGATAGAAATAATCATCATAATAA ATTACAGTAATCACCGTAATTAAAATATTACAAAGGGCGAGGGAGAAAAAAAAAAAAACCCCACACAACCCAACCCGGT CCGAGCTCCTTAAGACCCTCCCTCTCCCCCCTCCCCTCCGCAGACCCAATCGCCCCCACCCCATCTCCAAATCCCGCTG AAAGCAGAAAGCAGAATCCGAATGGGAAGGAGAGGAGGAAGGAGGAAAAAAAAAAGAAAGGCAACTTCACGGCCGCCCC TCATAGTTGTGCTGTGAGCGCCTACGAGGGGTGTGCCTTCGGGAAAATGCATACAAATCTGCCATTGATTTTCATAATG TTTCTGCGGTGTTTGAAAACCAATCGTTTGAACCTCTGAGATCTTACCTAAGTGAACCACTCCTACGCATCTAAGTGCT CCAAACTGATATATGACAATATCTACTTTGGATCACGTGTTCCTCCGGAGCGACTAAGACGGATCGCGCGTCATCTCGC CTTCCCAAATTTTTTCCCCTCCGCACATCGGATCCAAAACATCTATCTATAGGAGCGAGAAAAGGAGAAAGATGTTTAA CTCAGTGAATCTGGGCAACTTCTGCTCCCAGTCGCGTAAAGAGAGGAGCGCTGAGTTTGGAGAGCGGGCGGGTTGCGCT TCCAACCTCTACCTCCCCAGCTGTACCTATTACGTCCCCGAATTTTCAACTGTGTCATCTTTCCTGCCACAGGCCCCCT CTCGCCAAATCTCCTACCCGTACTCCACCAACCTCTCGCAGCCCGTGCGAGAGGTCTCCTATGGTCTAGACCCCTCCAG TAAATGGCACCATAGAAGCAATTACGCGTCGTGTTATTCCGCAGAAGATCTGATGCATAGAGAGTGCATCCCGCCTTCC ACCATGACCGAAATGCTAATGAAAAACGAGAGCGCGTACAGCCACCACCACCCCAGCTCCAACCACCCGGCACCGACGG GATTCTACGGCGGCATGAACAAAAACACGGTCCTGCCCCAAGGCTTCGACCGCTTCTTCGAAAACGCGTATTGCGGGGC GGAAAACCCGACCGAGAGCTGCGGGCAGAAGGGAGAGGGCAAAGGGGAGGCTGAGCCCCAGAGCCACGCGCTGTCATCC CGCGGAGAGACGGGGATGGACCCGGAAGACGAAGAGGAGAACACAACTCCCGGCTCTTCAGCCTCGTCCTCCTCTGTCA ACAAGGAAGGAAGCAAAAGCAGCAATTCGAGTGCTCCCCGAACGAGGAAGAAGAGGTGCCCCTATTCGAAATTCCAGAT CAGAGAGCTGGAGAGAGAATTCTTCTTCAATGTCTATATAAACAAAGAAAAGAGGCTCCAGTTGTCTCGGATGCTGAAT CTCACTGACCGACAAGTTAAAATCTGGTTTCAGAACAGAAGAATGAAAGAAAAAAAATTAAGCAGAGACCGCCTGCAGT ATTTCTCTGGAAATCCCTTATTGTGAACATCTTTGTAATCCCCTCTGCTGGCGAAGTGTTTCGGGAAGGAACGGCCGCA CGCGTGGCTTTGCCCTTTCAGCCGACAAAGCAACCTCAAAGTTTGAGCCTTTTCGTTACTTACATTTCTATGTCTGGGA CAGTTCAGAGTAACAAAAGGAGTGAAACGTTCTTTCATTTACCAAACCGCTCAAGGACTCGAATTCCACGAACATTTTA TTTAACTTCTTTTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTGGCCTGAACGAGATGGGATTC CTCCCTTCCACCCCCCCTCTCCCCTCCTCCCCCTTCTTCTTCTTCTTCTTCTTTTATTTTTTTAATTATTATTATTGTT ATTATTATTCTGATGGCGATGATGATTGGCCGCCCCCGTCCCTCTGAACGCATCGCAGCGCTGTGCGGGTGTTGTTGTG ACTTCACAACGCGGCCGCGTTATCCCAGGAGCGGCCAAAATCTCCCTGTAGGATCACATCCCTTCGCCTGGGGGTGAGT GTGAGTGTGTGTGTGTGTGTATGCGCGTGTGTGTGAAGCGCACCAACGCGTGTGTCCCCGTGTGTGTGTGTGTGTGTGT GTGTGTGCGCACATCGCACCCCCCGCTCCTCTGTGTCCTTCCTCCTCCCCATGGCCAAGAGCCGGACCCTAATTTAAAT CCCTGTCTGCAAGCAGAACGAAGATTCTCACCCCCCCTCCCA
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( XM_428250).