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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXD9
homeobox D9

Gene

Official Symbol	HOXD9
Official Full Name	homeobox D9
CGNC ID	56606
also known as	homeobox protein Hox-D9\|chox-4.4\|homeobox protein Hox-4.4
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001234506
Polypeptide	XP_001234507
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3235	ENSG00000128709		MIM:142982
Mouse	15438	ENSMUSG00000043342	All phenotypic alleles (5):Targeted, knock-out(2) Targeted, other(3)	MGI:96210
Xenopus	100497640, 399194			485790
Zebrafish	30350	ENSDARG00000059274	ZDB-GENE-990415-121	ZFIN:ZDB-GENE-990415-121

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	771214
Ensembl Gene	ENSGALG00000027513
KEGG	gga:771214

Entry 1

GEISHA Id	Hoxd-9.Reid.2002	Data Source	Publication
Complete cDNA Template Probe	show ATGTCGTCTAGTGGCACCATAAGTAACTATTATGTCGATTCTCTCATAGGCCATGAAAGCGAAGAAGTTTACGGGAGTA GATTCGTCCAGGGGGGTCACAGTGCGACCTCCAGGCCATCAGGTGTGGCAGAGAGTTCCGATTTTTCCTCCTGTAGCTT TGCACCAAAATCCACCGTGTTCTCCACCTCCTGGTCCACGGTTCACCCGCAGCCGCCCGCGGCCATGACCGGGATCTAC CACCCCTACATGCACCAGCCCCACTTAGGGGCAGCCGACGCCGGCCGCTACGTGCGCTCCTGGATCGAGCCCTTCCCGG GCTTCCCGGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCTCCGCGTCCGGCTCGGGCTCGGGCTCGGGCTC CTCCGCCGGGCGCCACTACGGGATAAAGCCGGAGACGGGAGCAGCCGCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCC TCCAAAAGGACTGAGTGCTCCTCGTCCCGAGAGTCCCAGGGGATCGCCGTGCCCGAATACACGTGCGGCGCTTTCCTGC CGGAGCCCCGAGAGAAGGCGGCCGCCGGCAGCGCCAAGGAGCCCGCCGCCTGCAGCCACAGCCCCGGCCCCGGCGGAGA GCCGAAGGAGGAGAAGCAGCAGCAACTTGACCCAAGTAAGTGGGGAAGGGGAGCGAGAGGGGAAGAGCGGCGGGGAGAG AGGGAGCGAGGGAAAGAAAGGAAGAAAGAAAGAAATTGCCCCTTTGATTTATTGCCGAAACCTGTAAGGCTCGAATGTG CAAAACTGATAGTTTTACTAACCTATAAAAACGTCTAG
Citation	Reid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
Copyright	Copyright © 2007 UBC Press
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234506.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

31-44

stage 34

stage 36

stage 44

Dermis
Feathers/Scutae
Spinal Cord
Spinal Ganglia and Nerves

Comparison of several genes
Comparison of several genes.

Entry 2

GEISHA Id	HOXD9.Alvarez.2003	Data Source	Publication
Complete cDNA Template Probe	show ATGTCGTCTAGTGGCACCATAAGTAACTATTATGTCGATTCTCTCATAGGCCATGAAAGCGAAGAAGTTTACGGGAGTA GATTCGTCCAGGGGGGTCACAGTGCGACCTCCAGGCCATCAGGTGTGGCAGAGAGTTCCGATTTTTCCTCCTGTAGCTT TGCACCAAAATCCACCGTGTTCTCCACCTCCTGGTCCACGGTTCACCCGCAGCCGCCCGCGGCCATGACCGGGATCTAC CACCCCTACATGCACCAGCCCCACTTAGGGGCAGCCGACGCCGGCCGCTACGTGCGCTCCTGGATCGAGCCCTTCCCGG GCTTCCCGGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCTCCGCGTCCGGCTCGGGCTCGGGCTCGGGCTC CTCCGCCGGGCGCCACTACGGGATAAAGCCGGAGACGGGAGCAGCCGCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCC TCCAAAAGGACTGAGTGCTCCTCGTCCCGAGAGTCCCAGGGGATCGCCGTGCCCGAATACACGTGCGGCGCTTTCCTGC CGGAGCCCCGAGAGAAGGCGGCCGCCGGCAGCGCCAAGGAGCCCGCCGCCTGCAGCCACAGCCCCGGCCCCGGCGGAGA GCCGAAGGAGGAGAAGCAGCAGCAACTTGACCCAAATAACCCCGCGGCAAACTGGATCCACGCTCGTTCGACGAGGAAA AAGCGTTGCCCCTACACTAAGTATCAAACTCTGGAACTGGAGAAGGAGTTTCTCTTTAACATGTACCTCACCCGCGACC GCCGCTACGAAGTAGCTAGGATTCTAAATCTCACCGAGAGACAGGTCAAAATCTGGTTTCAGAACAGACGGATGAAAAT GAAAAAGATGAACAAGGAGAAAGGCAATAAAGGAGACTAA
Citation	Alvares LE, Schubert FR, Thorpe C, Mootoosamy RC, Cheng L, Parkyn G, Lumsden A, Dietrich S. Intrinsic, Hox-dependent cues determine the fate of skeletal muscle precursors. Dev Cell. 2003 Sep;5(3):379-90.
Copyright	Copyright © 2012 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_001234506.2

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Lateral Plate Mesoderm
Leg
Somites

Entry 3

GEISHA Id	Hoxd-9.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show GCGGTGCGGGCGGCCCCGGAGCGGTCCCGGGTGCGCCGCGCGGTGCTGTTGTTGATGATGATTTTTTTTTTTTTTTTAA TCACAGCAGCCCCAGTTTAGCGGATTGATTTACTCGCAGTATTGGTAAATATGATCACGTGGGCTCCGCAACCAATGGT TGAGGGTTGCAGTCTGCAAAATACTACGATTGTTCTCAGGGAGGGTATCATATACAGTTAACAGTGTAACCTTTTATAT GAGTAAGAGGGGAGCCTAAAATGTCGTCTAGTGGCACCATAAGTAACTATTATGTCGATTCTCTCATAGGCCATGAAAG CGAAGAAGTTTACGGGAGTAGATTCGTCCAGGGGGGTCACAGTGCGACCTCCAGGCCATCAGGTGTGGCAGAGAGTTCC GATTTTTCCTCCTGTAGCTTTGCACCAAAATCCACCGTGTTCTCCACCTCCTGGTCCACGGTTCACCCGCAGCCGCCCG CGGCCATGACCGGGATCTACCACCCCTACATGCACCAGCCCCACTTAGGGGCAGCCGACGCCGGCCGCTACGTGCGCTC CTGGATCGAGCCCTTCCCGGGCTTCCCGGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCTCCGCGTCCGGC TCGGGCTCGGGCTCGGGCTCCTCCGCCGGGCGCCACTACGGGATAAAGCCGGAGACGGGAGCAGCCGCCTCCTCTTCTT CCTCCTCCTCCTCCTCCTCCTCCAAAAGGACTGAGTGCTCCTCGTCCCGAGAGTCCCAGGGGATCGCCGTGCCCGAATA CACGTGCGGCGCTTTCCTGCCGGAGCCCCGAGAGAAGGCGGCCGCCGGCAGCGCCAAGGAGCCCGCCGCCTGCAGCCAC AGCCCCGGCCCCGGCGGAGAGCCGAAGGAGGAGAAGCAGCAGCAACTTGACCCAAATAACCCCGCGGCAAACTGGATCC ACGCTCGTTCGACGAGGAAAAAGCGTTGCCCCTACACTAAGTATCAAACTCTGGAACTGGAGAAGGAGTTTCTCTTTAA CATGTACCTCACCCGCGACCGCCGCTACGAAGTAGCTAGGATTCTAAATCTCACCGAGAGACAGGTCAAAATCTGGTTT CAGAACAGACGGATGAAAATGAAAAAGATGAACAAGGAGAAAGGCAATAAAGGAGACTAACGCCGGGGTGGGAACGCGG CCGGGGAGCGCAGCTCTGGGGCTGAGGTTGGGGCTGTGGTTTTTTCTTTTTCTTTTATTATTATTTGTATTTTTATTTT CGGTTCGCTCGGGTTTTATGCTTCCCCTGCCCCCTCGGCCCCGCGTGCGTCTCTCCTCCCCCCCCCCCTCCCGCCCCCC GCGCCCCCGCCCCAGGATCGTTAAATCAATCCGGTCTTTTTTAGGTAGAAGTGAAACGTGGTCTGTGTCAGGTATTTGG GGAAATGTTGTCTTGCTCGCCGACGTGTTTGCAGAGTCGCTTCCCCCCCCCCCTCTCCTCCCCCCCGGGCCGTTCGGTC GGTGGTGTTGTGAGTGCACGTTAGCTTCGGGGACTTTAGCTGATGTTAAGTGTTCGACATGTCTCTTACAAGTGATGTA GTTAGGTAGTTCCTTTGCCAAAATAAAGGTAAGGAAAGTAATTATAATAACGATAACAAACTATATATTAAATCACAGT GGCTTCGATCGACGGCAGCGCTGCGTCGTCCGCGATTCATTGAGAGGAAATCTCGCCCCAACCTCTGCTTTCTAGGTCT AAATTTTTTGCAATAGATGCCACCGCGAGGCCACGGGATGCCCCCTCCACCCCACCCCCTTAGTGCACTGTTAGGAGGT CGTCTCCGACTCGAAGCCATTTGCAATAGGCCTCACGTTTCCCGAGCTCCGGCCCGGTAAATGCTGTGCGCGCTCCCAC GTCCCTAACTGCCGACCTGCTGTATCTGTGTCCGTTCTAACACAATAAAGGCTGTCGTGACCGAA
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_025152481 ).