GEISHA - A Chicken Embryo Gene Expression Database
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HOXD8
homeobox D8

Gene
Official SymbolHOXD8
Official Full Namehomeobox D8
CGNC ID49743
also known ashomeobox protein Hox-D8|CHOX M product|chox-M|homeo box D8|homeobox protein Hox-M, Homeobox D8, HOXD8
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_207177
PolypeptideNP_997060
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3187
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3234ENSG00000175879MIM:142985
Mouse15437ENSMUSG00000027102All phenotypic alleles (1):Targeted, knock-out(1) MGI:96209
Xenopus100216142, 398875920112
Zebrafish
Gene Ontology
Molecular Functionsequence-specific DNA binding transcription factor activity, more...transcription regulatory region sequence-specific DNA binding
Biological Processanterior/posterior pattern specification, more...negative regulation of transcription from RNA polymerase II promoter, skeletal system morphogenesis, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396301
Ensembl GeneENSGALG00000028128
KEGGgga:396301

Entry 1

GEISHA IdHOXD8.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerATTGGCGAGGAACCAGACCAC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGAGGAGCGGACGAGCGGACATCcDNA Template Length557
Forward cDNA Template Probeshow
CACCGGNNNNCCAGACGCATTGGAATCGCTCGGAGCAGTTGGACCCAAACCCGAACCCCACGGCGCGGAGTGGGGCGGG
ACGCGGCCCCGCGGGACGCACACGGCGGGGACGGGCCCGGAGCTGCGGCCGTGGGCTCCTCGTTCCCGATGGCCCTTCA
CAAAGGCTTTTAGGGCAAAATTAATTTAATTCGTGTGGCTTTCGGCTCTGTCGTCTTCCAGATCATGTGTTTCCTTTTT
GGCCTCCCCTTCCTTTCCCTCCTGCTTGGAAGCGGGGAATTTGTCCTTGTTGTTCTCCTTTTTCCACTTCATCCTCCTG
TTCTGAAACCAGATCTTTACCTGCCGCTCGGTGAGTCCTAGGGCGTGGGACACCTCGATTCGTCTCTTCCTGGTCAGAT
AGGGGTTAAAGAGAAACTCCTTCTCCAGCTCCAGCGTCTGGAAGCGGCTGTACGTCTGCCGCCCTCTCCTCCTCCCGGG
CGCTGCTTGCGGTCTCATCCAGGGAAACATTTGAGCGGGAGACGAGCTCTGATTTAAGTGGTCTGATTCCTCGACAATA
AAA
CommentsNo specific expression observed at or before stage 11.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
stage 17
Heart
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Somites
Widespread Expression
 
19-24
stage 20
stage 24
Eye
Foregut
Leg Mesenchyme
Sclerotome
Spinal Cord
Wing Mesenchyme
 

Entry 2

GEISHA IdHoxd10.Shah.2004Data SourcePublication
Complete cDNA Template Probeshow
CCCTGCAGCGGGGTTACCTGTCACGGGGAGCCCGCTAAATTTTACGGATACGATAACTTACAGAGACAGCAGATTTTTA
CGACACAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGCTAATATTGGCGAGGAACCAGACCA
CTTAAATCAGAGCTCGTCTCCCGCTCAAATGTTTCCCTGGATGAGACCGCAAGCAGCGCCCGGGAGGAGGAGAGGGCGG
CAGACGTACAGCCGCTTCCAGACGCTGGAGCTGGAGAAGGAGTTTCTCTTTAACCCCTATCTGACCAGGAAGAGACGAA
TCGAGGTGTCCCACGCCCTAGGACTCACCGAGCGGCAGGTAAAGATCTGGTTTCAGAACAGGAGGATGAAGTGGAAAAA
GGAGAACAACAAGGACAAATTCCCCGCTTCCAAGCAGGAGGGAAAGGAAGGGGAGGCCAAAAAGGAAACACATGATCTG
GAAGACGACAGAGCCGAAAGCCACACGAATTAAATTAATTTTGCCCTAAAAGCCTTTGTGAAGGGCCATCGGGAACGAG
GAGCCCACGGCCGCAGCTCCGGGCCCGTCCCCGCCGTGTGCGTCCCGCGGGGCCGCGTCCCGCCCCACTCCGCGCCGTG
TGGGTTCGGGTTTGGGTCCAACTGCATCCGGAGCGATCTCCAGATGTCCGCTCGTCCGCTCCTCCTGGAA
CitationShah, V, Drill, E, Lance-Jones, C. Ectopic Expression of Hoxd10 in Thoracic Spinal Segments Induces Motoneurons With a Lumbosacral Molecular Profile and Axon Projections to the Limb. Dev Dyn. 2004 Sep;231(1):43-56.
CopyrightCopyright © 2004 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_207177.1), which is currently the closest match to HoxD10 in the database.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
Limb Buds
Tail
 
25-28
stage 28
Spinal Cord
Tail
lumbosacral cord

Entry 3

GEISHA IdHOXD8.Reid.2002Data SourcePublication
Complete cDNA Template Probeshow
GGGCGATTATATTCCAGCCCCGGTCACCGCGCACACGGAGAGCAGGAGAGGGGAGCGCACGGGGCGCGGCGGCGGCGGC
ACCGGGAGAGCAGCGGAGAGGCACCGGCGGCGGCACCGGGAGCAGCGCCCCGCGCCCGCTCCCCGCCCGCCGCTGCCCC
CTCCCCGATGAGCTCCTACTTTGTCAACCCGCTCTACTCCAAGTACAAGGCGGCGGCTGCGGCTGCGGCGGCGGTGGCG
GCGGGGGAGCCTCTGCCCGCCCCGTACTACGACTGTCACTTCGCGCCCGAGAGACAGCAGATTTTTACGACACAGCAAG
AGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGCTAATATTGGCGAGGAACCAGACCACTTAAATCAGAG
CTCGTCTCCCGCTCAAATGTTTCCCTGGATGAGACCGCAAGCAGCGCCCGGGAGGAGGAGAGGGCGGCAGACGTACAGC
CGCTTCCAGACGCTGGAGCTGGAGAAGGAGTTTCTCTTTAACCCCTATCTGACCAGGAAGAGACGAATCGAGGTGTCCC
ACGCCCTAGGACTCACCGAGCGGCAGGTAAAGATCTGGTTTCAGAACAGGAGGATGAAGTGGAAAAAGGAGAACAACAA
GGACAAATTCCCCGCTTCCAAGCAGGAGGGAAAGGAAGGGGAGGCCAAAAAGGAAACACATGATCTGGAAGACGACAGA
GCCGAAAGCCACACGAATTAAATTAATTTTGCCCTAAAAGCCTTTGTGAAGGGCCATCGGGAACGAGGAGCCCACGGCC
GCAGCTCCGGGCCCGTCCCCGCCGTGTGCGTCCCGCGGGGCCGCGTCCCGCCCCACTCCGCGCCGTGTGGGTTCGGGTT
TGGGTCCAACTGCATCCGGAGCGATCTCCAGATGTCCGCTCGTCCGCTCCTCCTGGAAATCTGATAGCGAGTTCGCAGC
AATACATTTCTAATGAGATATATATATATATATATATAAACAGATACTATTTTTTTTTTTGCAATATTGAAAGACGGTG
ATTGCGACGTACACTTCCTAATGACAAGCGCCAATAAGCGAGACATGTACCAATGCTTTATTAATCAAACAAGTGCACT
TGTACTATTTTATTTCTTGTTATTTTCTAATCTCGAATAAATTAAGGAAATTTAATAAATTTTGAAGAGCAGATCTTAG
AAATATATCAAACTTTCTACTATCGATATTTGATTTAAATAAATCATAATTATTCAAATATAAAAAAAAAAAAAAAAA
CitationReid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
CopyrightCopyright © 2007 UBC Press
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_207177.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 35
stage 44
Feathers/Scutae
Spinal Cord
Comparison of several genes
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3187

Mouse

EmageMGI:96209
EurexpressMGI:96209
MGI GXDMGI:96209

Frog

Xenbase920112

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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