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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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IRX3
iroquois homeobox 3

Gene

Official Symbol	IRX3
Official Full Name	iroquois homeobox 3
CGNC ID
also known as	iroquois-class homeodomain protein IRX-3\|iroquois homeobox protein 3\|iroquois homologue-3 homeodomain
gene type	unknown

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA
Polypeptide
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	107054273
Ensembl Gene
KEGG

Entry 1

GEISHA Id	IRX3.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show `CTGNGTCCACTCAGATCAATAGGAAAAGTGCGAGAAGAAAGCAGCGCGCGGCGCGCAGCGCGGCCGCAGCCAGGCGGGA GCCGCGGCCTCCGAGCTCCGCTCCCGATGCGGCCCGGAGCCGGCGGCGGGCGCTGAGCGCTGAGCTGTGCCGGCGGCCC CGCGGCCAGCCCCGCCGCTCGCTGCCCTTTCTCTCCCTTCTTCCCTTCTGCCCCCCCCTCCCTACCCTTCNCCCCTCCC CNCCCCCCC`
Comments	Images and probe sequence provided by Claire Anderson. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Amnion
Anterior Intestinal Portal
Blood Islands
Dermomyotome
Ear/Otic Placode
Ectoderm
Endoderm
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Crest
Neural Plate/Tube
Notochord
Outflow Tract
Pharynx
Somites
Splanchnic Mesoderm
Yolk Sack or Stalk
extraembryonic mesoderm

section 12
section 18
section 34

Entry 2

GEISHA Id	IRX3.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show AGATCAATAGGAAAAGTGCGAGAAGAAAGCAGCGCGCGGCGCGCAGCGCGGCCGCAGCCAGGCGGGAGCCGCGGCCTCC GAGCTCCGCTCCCGATGCGGCCCGGAGCCGGCGGCGGGCGCTGAGCGCTGAGCTGTGCCGGCGGCCCCGCGGCCAGCCC CGCCGCTCGCTGCCCTTTCTCTCCCTTCTTCCCTTCTGCCCCCCCCTCCCTACCCTTCCCCCCTCCCCACCCCCCCCGC ACCATGTCGTTCCCGCAGCTGGGCTACCAGTACATCAGGCCGCTGTACCCCGCCGAGCGCCCGGGCAGCGGCGGCTCCC GAGGCGGCGCGGAGCTGGCCCCGTCCGGGACCCTCTCCAACGTGCTCTCCTCCATGTACGGCGCGCCCTACGCCGCCGC CGCCGCCGCTCAGGGCTACGGAGCCTTCCTGCCCTACGCCGCCGAACTGCCCATCTTCCCGCAGCTGGGCGCGCAGTAC GAGCTGAAGGAGAGCCCCGGGGTGCAGCACGCCGCCTTCCCGCATCACCACCCCGCTTTCTACCCCTACGGGCAGTACC AGTTCGGGGACCCGTCGCGGCCCAAGAACGCCACCCGCGAGAGCACCAGCACGCTCAAGGCCTGGCTCAACGAGCACCG CAAGAACCCGTACCCCACCAAGGGTGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACC TGGTTCGCCAACGCTCGGCGGCGGCTCAAGAAGGAGAACAAGATGACCTGGGCCCCCCGCAGCAGGACGGACGAGGAGG GCAACTCCTACGGCAGCGACCACGAGGGGGAAGAGGACAAGAGGGAGGACGAGGAGGAGATCGACCTGGAGAACATCGA CACCGAGAACATCGAGAGCGCCAAGGACGAGCTGGAGGACGAGCTCCAGGACGCGGACCTGCTGCACTCCGACTCCAAG ACGGACTCGGAGGGCTCCGAGGGCTTCGAGGACCTGCCCGGCTCCGAGGAGCGCTACCTCGGTCCGGCCGCCGCAGCCG CCGCGGAGCCGCTCCGCCTCCGCCACCACCACCTCCGCCACCACCGCCACCACCGCCGCCCGCCCTGCGAGCTGCCCTC CGCCGGCCCCGAGCCGCCGCCGCCCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACCTCTCGCCCCCCTCC TCCGCCTCCTCGTCGTCCGCCTCCTCCCCGACGGACGCCGCTTCGGCCGGCACCGTGCCGAAGCCCAAGATCTGGTCGC TGGCCGAGACGGCCACCAGCCCGGACAACCCCCGCAAGTCTCCCGGCTCCCCGCCGGCGGCCGCCCCCCAGCCGCTGCC GCTGCCCCCCCCGCCGCCCCACAGACTCGTCTCCTCCTGCCCGCTGGGCAAGTTCCCCAACTGGACCAACCGCGCCTTC CCGGCCGCCTCCCCGCACCACCACGCGGCCCCGCACCCGCTGGCCTTACTGAACACTCCGCACCTGCTGGGGCTGGGGG CCGCCCCCGCCGCCGCCGCCGCCTTCCCGCGGCCCGCGGAGCAGGCGCCGAGCGCGGAGCCCCCCGGAGCAGATCGATC TAGTGCCTTGGAAGTAGAGAAAAAGTTAATAAAGACAGCTTTCCAGCCAGTGCAGAGGCGGCCCCAGAACCAGCTCGAT GCCGCCATGGTTCTATCGGCGCTGTCATCGTCTTAGTTAATTTTTTATCGTTGTTGTAATGATTGTAAAAAGAAATCTC TGTATAGTTACGACGTTACGCATGTCCGTATGGTAAAACTAAAAAGGAAAAGACAAAAATACAGCCCCGCTTCTGTGCT CCCCCCGGGTCCCGGGCCGTGCGGTTGGTGGAAGTCCCGTGAGCGTCCGTTCGGTGTCTCGGTTTTTGGTTTTTATTTT TTGTTTGTTTGTTTGGTTGGTTGGTTTTGTACATACCGTCAAACCTGTACATACGTGTGAACCAAATTGTACGAGAAAG TATCTATTTTTGGCTAATAAAGACACGGTTGCCACTTTGCCTACA
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_015292372).