GEISHA - A Chicken Embryo Gene Expression Database
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ISL1
ISL LIM homeobox 1

Gene
Official SymbolISL1
Official Full NameISL LIM homeobox 1
CGNC ID11048
also known asISL-1, ISLET-1, insulin gene enhancer protein ISL-1|ISL1 transcription factor, LIM/homeodomain, (islet-1)|domesticus (clone 1.7 kB) islet-1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205414
PolypeptideNP_990745
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.1507
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly35147FBgn0003896
Human3670ENSG00000016082MIM:600366
Mouse16392ENSMUSG00000042258All phenotypic alleles (12):Targeted, knock-out(2) Targeted, other(10) MGI:101791
Xenopus549474, 100126604481335
Zebrafish30147ENSDARG00000004023ZDB-GENE-980526-112ZFIN:ZDB-GENE-980526-112
Gene Ontology
Molecular FunctionbHLH transcription factor binding, enhancer sequence-specific DNA binding, more...RNA polymerase II activating transcription factor binding, RNA polymerase II transcription coactivator activity, sequence-specific DNA binding transcription factor activity, zinc ion binding
Biological Processatrial septum morphogenesis, cardiac cell fate determination, cardiac right ventricle morphogenesis, more...endocardial cushion morphogenesis, innervation, negative regulation of inflammatory response, negative regulation of neuron apoptotic process, negative regulation of transcription, DNA-templated, negative regulation of transcription from RNA polymerase II promoter, neuron fate specification, outflow tract septum morphogenesis, peripheral nervous system neuron axonogenesis, pharyngeal system development, positive regulation of angiogenesis, positive regulation of granulocyte colony-stimulating factor production, positive regulation of granulocyte macrophage colony-stimulating factor production, positive regulation of interferon-gamma production, positive regulation of interleukin-12 production, positive regulation of interleukin-1 alpha production, positive regulation of interleukin-1 beta production, positive regulation of interleukin-6 production, positive regulation of tumor necrosis factor production, positive regulation vascular endothelial growth factor production, secondary heart field specification, sensory system development, trigeminal nerve development, ventricular cardiac muscle tissue morphogenesis
Cellular Componentnucleus
Links to other databases
Entrez Gene396383
Ensembl GeneENSGALG00000014884
KEGGgga:396383

Entry 1

GEISHA IdISL1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATCATCGGCTTCAGCAAGAACG
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGTCTCTCCAATAGGGTTGAGGGTAAGcDNA Template Length923
Complete cDNA Template Probeshow
TTTTTTTAAAGTTGGGGCCGCAGAATATCATCGGCTTCAGCAAGAACGACTGTGATGCGCGCCCGCGCCAAGGGTGTAC
CACATCGAGTGGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGGCGATGAATTCGCGCTGCGGGAGGACGGC
CTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCCGGGGATCCCCTCAGCCCCTTGCACCCGG
CCCGACCGCTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTCTGCGGCCCCACGTCCACAAGCAGCCTGA
GAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTTGAGGACCTGCTACGCTGCCAACCCCAGA
CCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCGAGGGTCATCAGGGTTTGGTTTCAAAACA
AGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGCAGCAACCCAATGACAAAACTAATATCCA
AGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGGTGGTTTACAGGCGAACCCGGTGGAGGTG
CAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGTGACATAGATCAACCTGCTTTTCAGCAAC
TAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAGTGGCATCAATGTCCTCTCAGCTCCCAGA
TACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCATCCAGAGTTCTGATGTTGTTTCCTGCCCT
TACCCTCAACCCTATTGGAGAGACCTTTAGTGAGGGTTATTTTTCAAACAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Unlabeled
 
4-6
stage 4
stage 5
stage 6
Lateral Plate Mesoderm
Unlabeled
 
7-12
stage 7
stage 8
stage 8
stage 8
stage 9
stage 10
stage 11
Anterior Intestinal Portal
Endoderm
Head Mesenchyme
Heart Tube
Hindbrain
Lateral Plate Mesoderm
Midbrain
Paraxial Mesoderm
Primitive Streak
Splanchnic Mesoderm
Tail
extraembryonic ectoderm
extraembryonic endoderm
HH 8+/9-
HH 8-
13-18
stage 14
stage 17
Anterior/Second Heart Field
Cranial Ganglion
Gut
Head Mesenchyme
Lateral Plate Mesoderm
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Tail
Check anatomy top of head
19-24
stage 21
stage 21
stage 24
stage 24
Anterior/Second Heart Field
Head Mesenchyme
Hindgut
Leg
Leg Mesenchyme
Midgut
Oral Pharynx
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Spinal Ganglia and Nerves
Tail
 

Entry 2

GEISHA IdIsl1.Bothe.2006Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationBothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.
CopyrightCopyright © 2006 Wiley-Liss, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Ectoderm
Endoderm
Neural Crest
Neural Plate/Tube
Oral Pharynx
Pharyngeal Arches and Clefts
Splanchnic Mesoderm
Oral plate
Splanchnic/cardiac mesoderm
Ventral pharyngeal endoderm

Entry 3

GEISHA IdIslet1.Gimeno.2007Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationGimeno L, Martinez S. Expression of chick Fgf19 and mouse Fgf15 orthologs is regulated in the developing brain by Fgf8 and Shh. Dev Dyn. 2007 Aug;236(8):2285-97.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205414).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
Forebrain
 

Entry 4

GEISHA IdIslet1.Hargrave.2000Data SourcePublication
Complete cDNA Template Probeshow
TCAAACCTACTTTGGGGTCTTAAAACGAAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAG
ACATGGGAGACCCACCAAAAAAAAAACGCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATAT
TCTGAGGGTTTCTCCGGATTTGGAATGGCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACC
TGTACGTGCTTTGTTAGAGATGGCAAAACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGT
GCAGCATCGGCTTCAGCAAGAACGACTTCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGT
GGCCTGCAGCCGCCAGCTCATCCCCGGCGAT
CitationHargrave M, Karunaratne A, Cox L, Wood S, Koopman P, Yamada T. The HMG box transcription factor gene Sox14 marks a novel subset of ventral interneurons and is regulated by sonic hedgehog. Dev Biol. 2000 Mar 1;219(1):142-53.
CopyrightReprinted with permission from Elsevier. Copyright © 2000 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "The primers used in this study were cIslet1 (forward, ATCGCCGGGGATGAGCTGGCGGCT; reverse, TCAAACCTACTTTGGGGTCTTAAA; amplifying 426 nt at positions 211–636 nt; Tanabe et al., 1995)." The sequence below was obtained from NCBI (NM_205414) using this information.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Spinal Cord
Motor Neurons
19-24
stage 24
Spinal Cord
Motor Neurons
25-28
stage 28
 Figure 3 compares the expression patterns of Sox14, Islet1 and Lim3 in a population of ventral interneurons in chick spinal cord at HH18, HH24 and HH28.

Entry 5

GEISHA IdIslet1.Agarwala.2005Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationAgarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205414).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 22
Spinal Cord
Spinal Ganglia and Nerves
Dorsal Root Ganglion
Motor Neurons

Entry 6

GEISHA IdISL1.Thompson.2010Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationThompson H, Blentic A, Watson S, Begbie J, Graham A. The formation of the superior and jugular ganglia: insights into the generation of sensory neurons by the neural crest. Dev Dyn. 2010 Feb;239(2):439-45.
CopyrightCopyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205414.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-22
stage 21
stage 21
stage 22
stage 22
stage 22
Cranial Ganglion
Hindbrain
Neural Plate/Tube
Spinal Ganglia and Nerves
 

Entry 7

GEISHA IdISL1.Agarwala.2002Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationAgarwala S, Ragsdale CW. A role for midbrain arcs in nucleogenesis. Development. 2002 Dec;129(24):5779-88.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Ragsdale.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205414)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Midbrain
 
19-24
stage 21
stage 24
Midbrain
 
25-30
stage 28
stage 28
Diencephalon
Midbrain
Normal expression is on the left.
31-38
stage 38
stage 38
Midbrain
 

Entry 8

GEISHA IdISL1.Hasan.2010Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationHasan KB, Agarwala S, Ragsdale CW. PHOX2A regulation of oculomotor complex nucleogenesis. Development. 2010 Apr;137(7):1205-13.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Ragsdale.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 38
stage 38
Spinal Cord
 

Entry 9

GEISHA IdISL1.Chambers.2007Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationChambers D, Wilson L, Maden M, Lumsden A. RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1. Development. 2007 Apr;134(7):1369-83.
Copyright© 2007
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_205414.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
stage 16
stage 16
stage 16
Central Nervous System
Neural Plate/Tube
Pharyngeal Arches and Clefts
(Da) normal embryo
(De) normal embryo - flat mount
(Dg) normal embryo

Entry 10

GEISHA IdISL1.Kao.2009Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationKao TJ, Palmesino E, Kania A. SRC family kinases are required for limb trajectory selection by spinal motor axons. J Neurosci. 2009 Apr 29;29(17):5690-700.
CopyrightCopyright © 2009-12 by the Society for Neuroscience
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205414.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
stage 26
Spinal Cord
 

Entry 11

GEISHA IdISL1.Yuan.2000Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationYuan S, Schoenwolf GC. Islet-1 marks the early heart rudiments and is asymmetrically expressed during early rotation of the foregut in the chick embryo. Anat Rec. 2000 Oct 1;260(2):204-7.
CopyrightCopyright © 2000 Wiley-Liss, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205414.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Early Mesoderm
Ectoderm
Endoderm
Headfold
Hensen's Node
Lateral Plate Mesoderm
Primitive Streak
Splanchnic Mesoderm
HH stage 4+
HH stage 5+
7-12
stage 7
stage 8
stage 8
stage 9
stage 12
Anterior Intestinal Portal
Ectoderm
Endoderm
Forebrain
Headfold
Heart
Heart Tube
Lateral Plate Mesoderm
Neural Plate/Tube
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx
Somites
Splanchnic Mesoderm
Thyroid
heart rudiments
13-18
stage 13
stage 17
stage 17
Anterior Intestinal Portal
Cranial PNS
Duodenum
Forebrain
Foregut
Lateral Plate Mesoderm
Neural Plate/Tube
Pharyngeal Arches and Clefts
Pharynx
Spinal Ganglia and Nerves
Splanchnic Mesoderm
Stomach
Tail
Thyroid
 
19-22
stage 19
stage 19
stage 22
stage 22
Cranial Ganglia
Duodenum
Neural Plate/Tube
Spinal Ganglia and Nerves
Splanchnic Mesoderm
Stomach
 

Entry 12

GEISHA IdISLET1.Davey.2006Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationDavey MG, Paton IR, Yin Y, Schmidt M, Bangs FK, Morrice DR, Smith TG, Buxton P, Stamataki D, Tanaka M, Münsterberg AE, Briscoe J, Tickle C, Burt DW. The chicken talpid3 gene encodesa novel protein essentialfor Hedgehog signaling. Genes Dev. 2006 May 15; 20(10): 1365–1377.
CopyrightCopyright © 2006, Cold Spring Harbor Laboratory Press
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205414.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-20
stage 20
stage 20
Spinal Cord
 

Entry 13

GEISHA IdISLET1.Fischer.2009Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationFischer AJ, Foster S, Scott MA, Sherwood P.. The transient expression of LIM-domain transcription factors is coincident with the delayed maturation of photoreceptors in the chicken retina. J Comp Neurol. 2008 February 1; 506(4): 584–603.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsThe probe was amplified by PCR using the following primers: 5′-CGC CTG ATT TCC CTA TGT GT -3′ and 5′-CGT ATC TGG GAG CTG AGA GG-3′ and was extracted from NCBI Acc# NM_205414.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 38
stage 38
Retina
 

Entry 14

GEISHA IdISLET1.Ferrario.2012Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationFerrario JE, Baskaran P, Clark C, Hendry A, Lerner O, Hintze M, Allen J, Chilton JK, Guthrie S. Axon guidance in the developing ocular motor system and Duane retraction syndrome depends on Semaphorin signaling via alpha2-chimaerin. Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14669-74.
CopyrightCopyright © 2012 National Academy of Sciences.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205414.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 29
Midbrain
double in situ: PlexinA2(blue): Islet1(red)

Entry 15

GEISHA IdISL1.Nathan.2008Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationNathan E, Monovich A, Tirosh-Finkel L, Harrelson Z, Rousso T, Rinon A, Harel I, Evans SM, Tzahor E. The contribution of Islet1-expressing splanchnic mesoderm cells to distinct branchiomeric muscles reveals significant heterogeneity in head muscle development. Development. 2008 Feb;135(4):647-57. doi: 10.1242/dev.007989. Epub 2008 Jan 9.
CopyrightCopyright held by the authors. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205414.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-8
stage 8
stage 8
stage 8
Anterior/Second Heart Field
Splanchnic Mesoderm
HH Stage 8+

Entry 16

GEISHA IdISL1.GarciaCampmany.2007Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationGarcía-Campmany L, Martí E. The TGFbeta intracellular effector Smad3 regulates neuronal differentiation and cell fate specification in the developing spinal cord. Development. 2007 Jan;134(1):65-75. Epub 2006 Nov 30.
CopyrightCopyright by the authors. Published by the Company of Biologists Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205414.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
stage 19
Spinal Cord
 

Entry 17

GEISHA IdIslet‐1.Iwamasa.1999Data SourcePublication
Complete cDNA Template Probeshow
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATG
CitationIwamasa H, Ohta K, Yamada T, Ushijima K, Terasaki H, Tanaka H. Expression of Eph receptor tyrosine kinases and their ligands in chick embryonic motor neurons and hindlimb muscles. Dev Growth Differ. 1999 Dec;41(6):685-98.
CopyrightCopyright © 1999 John Wiley & Sons, Inc.
CommentsThe complete cDNA template sequence was obtained from the information provided in the publication as described in Iwamasa et al. 1999.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-27
stage 27
stage 27
stage 27
Spinal Cord
brachial
lumbar
thoracic

Entry 18

GEISHA Idc-ISLET1.Adamska.2001Data SourcePublication
Complete cDNA Template Probeshow
GCACGAGGGCGAGTGCCGAGCCGCCAGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGGCCCCGCAGCACCG
CGCGGCAGGACCCCGCGGCAGGACCCCGCTGCGCAGCCGGACCCCGCGTCGCATCGCATCGCATCGCATCGCACCGCAC
CGCCCCCTTCTCGTCCGCAGCCCTGACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACG
AAACCGTACACCATTTCACTGTGGACATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAAC
GCCTGATTTCCCTATGTGTTGGTTGCGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATG
GCATGCGGCGTGTTTGAAGTGTGCAGAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAA
ACCTACTGTAAAAGAGATTATATCAGGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACT
TCGTGATGCGCGCCCGCGCCAAGGTGTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGG
CGATGAATTCGCGCTGCGGGAGGACGGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCC
GGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGTTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTC
TGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTT
GAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCG
AGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGC
AGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGG
TGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGT
GACATAGATCAACCTGCTTTTCAGCAACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAG
TGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCAT
CCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGA
AATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGT
TTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACA
AGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAA
TCTT
CitationAdamska M, Herbrand H, Adamski M, Krüger M, Braun T, Bober E. FGFs control the patterning of the inner ear but are not able to induce the full ear program. Mech Dev. 2001 Dec;109(2):303-13.
CopyrightCopyright © 2001 Elsevier Science Ireland Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205414.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Cranial Ganglia
Ear/Otic Placode
 
31-44
stage 44
  

Entry 19

GEISHA IdIsl1.Boije.2008Data SourcePublication
Complete cDNA Template Probeshow
TTCAGCAGCAGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAG
ACATGATGGTGGTTTACAGGCG
CitationBoije H, Edqvist PH, Hallböök F. Temporal and spatial expression of transcription factors FoxN4, Ptf1a, Prox1, Isl1 and Lim1 mRNA in the developing chick retina. Gene Expr Patterns. 2008 Jan;8(2):117-23. Epub 2007 Oct 1. DIO: 10.1016/j.modgep.2007.09.004.
CopyrightCopyright © 2007 Elsevier B.V. 
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Boije et al. 2008.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Retina
 
19-24
stage 20
stage 22
stage 22
stage 22
stage 22
stage 24
Diencephalon
Eye
Mesencephalon
Retina
Rhombomeres
Telencephalon
 
25-30
stage 26
stage 29
Retina
 
31-44
stage 32
stage 35
stage 35
stage 38
stage 41
stage 44
Retina
 
all
 
 
  

Entry 20

GEISHA IdISL1.Anderson.2021Data SourceDirect Submission
Complete cDNA Template Probeshow
GAGCGGGCCNAGCCTGGGNGCCGGGGATCCCCTCAGCCCCTTGCACCCGGCCCGACCGCTGCAGATGGCAGCAGAACCT
ATNTCTGCCAGACAGCCAGCTCTGCGGCCCCACGTCCACAAGCAGCCTGAGAAGACCACCCGAGTCCGAACTGTCCTTN
AATGAAAAGCAGCTTCACACCTTGAGGACCTGCTACGCTGCCAACCCCAGACCCGACGCCCTCATGAAAGAGCAACTGG
TAGAAATGACTGGCCTCAGTCCGAGGGTCATCAGGGTTTGGTTTCAAAACAAGCGATGCAAGGACAAAAAAAGAAGCAT
TATGATGAAGCAACTTCAGCAGCAGCAACCCAATGACAAAACTAATATCCAAGGGATGACAGGAACTCCGATGGTGGCT
GCTAGTCCGGAGAGACATGATGGTGGTTTACAGGCGAACCCGGTGGAGGTGCAAAGTTACCAGCCACCCTGGAAAGTAC
TGAGTGACTTCGCATTGCAGAGTGACATAGATCAACCTGCTTTTCAGCAACTAGCAGGTTAATTTTTCAGAAGGAGGAC
CTGGTTCCAATTCTACCGGAAGTGAAGTGGCATCAATGTCCTCTCAGCTCCCAGATACGCCCAACAGCATGGTAGCCAG
TCCTATTGAGGCATGAGGAAAATTCATCCAGAGTTCTGATGTTGTTTCTGCCCTTACCCTCAACCCTATTGGAGAGAGT
GGGGAAGTGATCGTGTTTGGACTCCGAAATTTAGGTGGGAAAAGTATTTATCAGCCCTTTAATGAACCTGGCAAGGAAC
CGCTCCATGAAACAAACGGAGTCATGTTTGAAAAGAGAAGGTAATATGGTAGCAACACTGTGAAGACAATCATGGGATC
CTACTAGAATAAATGCTAAAACAAACAAGAAACCACCACGCTACTCAATGATCTTGAGGAGGATCGAAAAGACATTTTC
AAAATATAGGGGATATGTACTCATGAATCTTAAAAAAAAAAAAAAAAAA
CommentsImages and probe sequence provided by Claire Anderson. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Early Mesoderm
Endoderm
Headfold
Lateral Plate Mesoderm
 
7-12
stage 8
stage 9
stage 10
stage 11
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
stage 12
Anterior Intestinal Portal
Ectoderm
Endoderm
Forebrain
Head Mesenchyme
Head Process
Heart Tube
Hindbrain
Lateral Plate Mesoderm
Midbrain
Pharyngeal Arches and Clefts
Pharynx
Somatic Mesoderm
Splanchnic Mesoderm
Tail
Thyroid
extraembryonic ectoderm
extraembryonic endoderm
right dorsal mesocardium, caudal dorsal mesocardium
section 19 dorsal mesocardium
section 29
section 4
section 46
section 65
section 73
ventral view
ventral view; cardiogenic mesoderm

Entry 21

GEISHA IdISL1.Anderson.2019Data SourcePublication
Complete cDNA Template Probeshow
AGCGCCCAGTCCAGCACCGCCGCACCGCCGCACCGCACCGCGCCCCGCAGCACCGCGCGGCAGGACCCCGCGGCAGGAC
CCCGCTGCGCAGCCGGACCCCGGCGTCGCATCGCATCGCATCGCACCGCACCGCGCCCCCTTCTCGCTCCGCAGCCCTG
ACAGTGTCTCCCACGCCGCGACAGCTTTCAAACCTACTTTGGGGTCTTAAAACGAAACCGTACACCATTTCACTGTGGA
CATTACACCCTCTTACAGATATGGGAGACATGGGAGACCCACCAAAAAAAAAACGCCTGATTTCCCTATGTGTTGGTTG
CGGCAATCAAATTCACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATGGCATGCGGCGTGTTTGAAGTGTGCA
GAGTGTAATCAGTATTTGGACGAGACCTGTACGTGCTTTGTTAGAGATGGCAAAACCTACTGTAAAAGAGATTATATCA
GGTTATACGGCATCAAGTGCGCCAAGTGCAGCATCGGCTTCAGCAAGAACGACTTCGTGATGCGCGCCCGCGCCAAGGT
GTACCACATCGAGTGTTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGGCGATGAATTCGCGCTGCGGGAGGAC
GGCCTCTTCTGCCGGGCGGACCACGACGTGGTGGAGCGGGCCAGCCTGGGCGCCGGGGATCCCCTCAGCCCCTTGCACC
CGGCCCGACCGCTGCAGATGGCAGCAGAACCTATCTCTGCCAGACAGCCAGCTCTGCGGCCCCACGTCCACAAGCAGCC
TGAGAAGACCACCCGAGTCCGAACTGTCCTTAATGAAAAGCAGCTTCACACCTTGAGGACCTGCTACGCTGCCAACCCC
AGACCCGACGCCCTCATGAAAGAGCAACTGGTAGAAATGACTGGCCTCAGTCCGAGGGTCATCAGGGTTTGGTTTCAAA
ACAAGCGATGCAAGGACAAAAAAAGAAGCATTATGATGAAGCAACTTCAGCAGCAGCAACCCAATGACAAAACTAATAT
CCAAGGGATGACAGGAACTCCGATGGTGGCTGCTAGTCCGGAGAGACATGATGGTGGTTTACAGGCGAACCCGGTGGAG
GTGCAAAGTTACCAGCCACCCTGGAAAGTACTGAGTGACTTCGCATTGCAGAGTGACATAGATCAACCTGCTTTTCAGC
AACTAGTTAATTTTTCAGAAGGAGGACCTGGTTCCAATTCTACCGGAAGTGAAGTGGCATCAATGTCCTCTCAGCTCCC
AGATACGCCCAACAGCATGGTAGCCAGTCCTATTGAGGCATGAGGAAAATTCATCCAGAGTTCTGATGTTGTTTCTGCC
CTTATCCTCAACCCTATTGGAGAGAGTGGGGAAGTGATCGTGTTTGGACTCCGAAATTTAGGTGGGAAAAGTATTTATC
AGCCCTTTAATGAACCTGGCAAGGAACCGCTCCATGAAACAAACGGAGTCATGTTTGAAAAGAGAAGGTAATATGGTAG
CAACACTGTGAAGACAATCATGGGATCCTACTAGAATAAATGCTAAAACAAACAAGAAACCACCATGCTACTCAATGAT
CTTGAGGAGGATCGAAAAGACATTTTCAAAATATAGGGGATATGTACTCATGAATCTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATTACATTTGACTGCACATCTTAGAGAGAAACCAAGATAGAGGGACTTTCTCCTAACCCGAATGGTGC
TGTTTCTATATTGGTCATTGCCTTGCCAAAAGGAGCTCCGGTAGGTTTTCCATCATCAAGAAAGAGACTATTTAGCCCC
GCGTTGTTGAAAGATTCATTGCAGGAAGGTGGAGCTGCATTGGTTTGCAATGTTGTTTTTAGTTGATTCTTAACAAGGG
GTTGTTTCCTGGGTCTCTTATAGCATGTACTGTAGCGGGGTTTTGGTTTGTGTTTGGTTGAGATCCACCCTCTATCAAG
TCTGAAGTAATTAATAAATAGGTTTTTGAATTACTCTTTAAAAACCATTTATAAAAGCATTGCAACAAGGTATACCTCT
ATTTTGCCACAAAGCGTCTCGGGATTGTGTTTGAAATGTGTCTGTCCAAGAACCTTCCCCTCCCCCAAAGATGTGTATA
GTCATCGGTTAAAACGACTGTTTTCTCTTTCTTTCTTTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTTTCTCTCAATA
AAGAGAAAAAAAAAGTATAAAAAAAGTAAAAAGAAAAAGGAAAAAAACACCACCTTTTTTGTTTGCTCTTGCATTGCAA
AATTATAAAGTAATTTATTATTTATTATTGGAAGACTTGCCACTTTTCATGTCATTTGACTCTATTTTTTTTTTGTTTG
CTGAAGTAAAAAAGAAAAAAAAAAGAAAAAAGAAAAAAAAAAAGAAAAGATTGTACCGTGGTCTTTGAATTATATGTCT
TATTCTATGTGTTTTTTGTCTTTTTTTCCTTAAATATTATGTGAAATAAAAGCGCCATATGTAGAATTATTATATCTTC
AGGACTATTTCACTAAATAAGCGTTTGGAATAGAGAAAATAATAATAGTAATAATAATAATAATAATAATAATGATAAA
TAATGAACAAAGTTCCCTCTTTTAAATATTTACAAATTAGCAGCTAAAATACCTGAAATAAAATATTGCATGCAAAGCA
GGTCGTTAGTGAAAACAAGGAGTGTGATATTTTATTGCAAGTATTAACGACCAGCTTGTAAATTTCCGTTTCAACAACT
ATATCAGGGCTAGTTGGATGCCTTAGCTTTCAATCGATAACATTAGAAACTCTCTTGTTCCCTCCCCTCCCCCTTATCC
CTTGCCCTTATAAAAGTGGTATTACTCTAGGCATGGTCTGACATAACTTTAGGACATCGAAAGAACTGAGAGCTCAGGC
TTTTTGCTGAGTTCCATTATTTTTTAAAAAATATTAAAAAGTAAGTGCTGTATACCAAAGCCTCGTTGTTGAGATTGTT
GAAGTGACCTGTATTTTAAGTATAAGCTCCTGATAAAAGGGATGCTTTTTGCTTAACAAGTCAAGTATGACCATTATTT
ATCAGTGTCTGCTGTCAAAACGCTTGAAAAAATGCTGCAGAAGAAATAGGATTCGGGGATATTGCTATGAAATTGCACG
ATCGGTGTTCCTTCTTCTCTGTCGACTTCCCTCTCTTCACTCCCTCTTTTCTTCCTTTTTTAATTTGCGGGGGAGAGGG
TGGTGAAGGATAAAAACGTGGGCGAGTTCTTGGGGAAAAGTGAGAAAGGAAGAAGGAAAAAAATAACAAAACAGTGGAA
AGGGTTGTGTTTGCTCGAATCCAAGTGTTCCCTAGTGCTCCCGGCCAGCACGAGACAATGACTCGCCCTAAAAAATCCT
TAACAACTGGAATATACAGAGATTTTTAGGCTGACAAGGACAAGTTGGTTTGCATGATAGTTACTCCAAAGCCTGATGT
TTTCTTAACATAACCTTTTTCTTCCCTCCTCCCCATTTCAGCTCTCCCTGAGCAAGCTCAGCTATAGAGACAAACCATT
TCGACAGTAGAAAGAAAATAATAATAATAATAACAATAATAATAATAATAGAGGTTAAAAGCCTAATACAAGGATTTCA
ATCATCCTGATTAGAAACTGGATTCATTTTGTATGCTCAAGTGTAATACATTTTTGAGTACTTGATAAATATTTAAATA
AATATGAAATCTACCTTAAA
CitationAnderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
CopyrightCopyright © 2019 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205414).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
stage 12
Heart
dorsal mesocardia
rostral dorsal mesocardia (RDM), caudal dorsal mesocardia (CDM)
rostral dorsal mesocardia (RDM), caudal dorsal mesocardia (CDM), rostral splanchnic mesoderm (SM)
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.1507

Mouse

EmageMGI:101791
EurexpressMGI:101791
MGI GXDMGI:101791

Frog

Xenbase481335

Fruit Fly

BDGPFBgn0003896

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-112
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